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Patrick E. McDonel, Ph.D. - Publications

Affiliations: 
2006 University of California, Berkeley, Berkeley, CA, United States 
Area:
Genetics
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 McDonel P, Guttman M. Approaches for Understanding the Mechanisms of Long Noncoding RNA Regulation of Gene Expression. Cold Spring Harbor Perspectives in Biology. 11. PMID 31791999 DOI: 10.1101/Cshperspect.A032151  0.313
2018 Quinodoz SA, Ollikainen N, Tabak B, Palla A, Schmidt JM, Detmar E, Lai MM, Shishkin AA, Bhat P, Takei Y, Trinh V, Aznauryan E, Russell P, Cheng C, Jovanovic M, ... ... McDonel P, et al. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus. Cell. PMID 29887377 DOI: 10.1016/J.Cell.2018.05.024  0.358
2018 Donnard E, Vangala P, Afik S, McCauley S, Nowosielska A, Kucukural A, Tabak B, Zhu X, Diehl W, McDonel P, Yosef N, Luban J, Garber M. Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon. Cell Systems. PMID 29454939 DOI: 10.1016/J.Cels.2018.01.002  0.336
2016 Engreitz JM, Haines JE, Perez EM, Munson G, Chen J, Kane M, McDonel PE, Guttman M, Lander ES. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Nature. PMID 27783602 DOI: 10.1038/Nature20149  0.37
2016 Chen CK, Blanco M, Jackson C, Aznauryan E, Ollikainen N, Surka C, Chow A, Cerase A, McDonel P, Guttman M. Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing. Science (New York, N.Y.). PMID 27492478 DOI: 10.1126/Science.Aae0047  0.504
2016 Ulirsch JC, Nandakumar SK, Wang L, Giani FC, Zhang X, Rogov P, Melnikov A, McDonel P, Do R, Mikkelsen TS, Sankaran VG. Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits. Cell. 165: 1530-1545. PMID 27259154 DOI: 10.1016/J.Cell.2016.04.048  0.302
2016 Wakabayashi A, Ulirsch JC, Ludwig LS, Fiorini C, Yasuda M, Choudhuri A, McDonel P, Zon LI, Sankaran VG. Insight into GATA1 transcriptional activity through interrogation of cis elements disrupted in human erythroid disorders. Proceedings of the National Academy of Sciences of the United States of America. PMID 27044088 DOI: 10.1073/Pnas.1521754113  0.329
2015 Cannon D, Corrigan AM, Miermont A, McDonel P, Chubb JR. Multiple cell and population-level interactions with mouse embryonic stem cell heterogeneity. Development (Cambridge, England). 142: 2840-9. PMID 26209649 DOI: 10.1242/Dev.120741  0.306
2015 McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, et al. The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. Nature. 521: 232-6. PMID 25915022 DOI: 10.1038/Nature14443  0.451
2013 Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, Guttman M. The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. Science (New York, N.Y.). 341: 1237973. PMID 23828888 DOI: 10.1126/Science.1237973  0.513
2012 McDonel P, Demmers J, Tan DW, Watt F, Hendrich BD. Sin3a is essential for the genome integrity and viability of pluripotent cells. Developmental Biology. 363: 62-73. PMID 22206758 DOI: 10.1016/J.Ydbio.2011.12.019  0.334
2006 McDonel P, Jans J, Peterson BK, Meyer BJ. Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature. 444: 614-8. PMID 17122774 DOI: 10.1038/Nature05338  0.59
2004 Meyer BJ, McDonel P, Csankovszki G, Ralston E. Sex and X-chromosome-wide repression in Caenorhabditis elegans. Cold Spring Harbor Symposia On Quantitative Biology. 69: 71-9. PMID 16117635 DOI: 10.1101/Sqb.2004.69.71  0.561
2004 Csankovszki G, McDonel P, Meyer BJ. Recruitment and spreading of the C. elegans dosage compensation complex along X chromosomes. Science (New York, N.Y.). 303: 1182-5. PMID 14976312 DOI: 10.1126/Science.1092938  0.57
2004 Meyer BJ, McDonel P, Csankovszki G, Ralston E. Sex and X-Chromosome-wide Repression in C. elegans Cold Spring Harbor Symposia On Quantitative Biology. 69: 1-10. DOI: 10.1101/Sqb.2004.69.45  0.546
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