| Year |
Citation |
Score |
| 2017 |
Schopper S, Kahraman A, Leuenberger P, Feng Y, Piazza I, Müller O, Boersema PJ, Picotti P. Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry. Nature Protocols. 12: 2391-2410. PMID 29072706 DOI: 10.1038/Nprot.2017.100 |
0.407 |
|
| 2017 |
Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg CH, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, et al. Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome. Molecular & Cellular Proteomics : McP. PMID 28292943 DOI: 10.1074/Mcp.M116.065326 |
0.409 |
|
| 2017 |
Leuenberger P, Ganscha S, Kahraman A, Cappelletti V, Boersema PJ, von Mering C, Claassen M, Picotti P. Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability. Science (New York, N.Y.). 355. PMID 28232526 DOI: 10.1126/Science.Aai7825 |
0.408 |
|
| 2015 |
Grimm M, Zimniak T, Kahraman A, Herzog F. xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints. Nucleic Acids Research. PMID 25956653 DOI: 10.1093/Nar/Gkv463 |
0.379 |
|
| 2015 |
Boersema PJ, Kahraman A, Picotti P. Proteomics beyond large-scale protein expression analysis. Current Opinion in Biotechnology. 34: 162-170. PMID 25636126 DOI: 10.1016/J.Copbio.2015.01.005 |
0.422 |
|
| 2014 |
Feng Y, De Franceschi G, Kahraman A, Soste M, Melnik A, Boersema PJ, de Laureto PP, Nikolaev Y, Oliveira AP, Picotti P. Global analysis of protein structural changes in complex proteomes. Nature Biotechnology. 32: 1036-44. PMID 25218519 DOI: 10.1038/Nbt.2999 |
0.414 |
|
| 2014 |
Merkley ED, Rysavy S, Kahraman A, Hafen RP, Daggett V, Adkins JN. Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances. Protein Science : a Publication of the Protein Society. 23: 747-59. PMID 24639379 DOI: 10.1002/Pro.2458 |
0.371 |
|
| 2013 |
Kahraman A, Herzog F, Leitner A, Rosenberger G, Aebersold R, Malmström L. Cross-link guided molecular modeling with ROSETTA. Plos One. 8: e73411. PMID 24069194 DOI: 10.1371/Journal.Pone.0073411 |
0.426 |
|
| 2012 |
Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, Walzthoeni T, Leitner A, Beck M, Hartl FU, Ban N, Malmström L, Aebersold R. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science (New York, N.Y.). 337: 1348-52. PMID 22984071 DOI: 10.1126/Science.1221483 |
0.438 |
|
| 2011 |
Kahraman A, Malmström L, Aebersold R. Xwalk: computing and visualizing distances in cross-linking experiments. Bioinformatics (Oxford, England). 27: 2163-4. PMID 21666267 DOI: 10.1093/Bioinformatics/Btr348 |
0.365 |
|
| 2010 |
Smith LJ, Kahraman A, Thornton JM. Heme proteins--diversity in structural characteristics, function, and folding. Proteins. 78: 2349-68. PMID 20544970 DOI: 10.1002/Prot.22747 |
0.625 |
|
| 2010 |
Leitner A, Walzthoeni T, Kahraman A, Herzog F, Rinner O, Beck M, Aebersold R. Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Molecular & Cellular Proteomics : McP. 9: 1634-49. PMID 20360032 DOI: 10.1074/Mcp.R000001-Mcp201 |
0.391 |
|
| 2010 |
Kahraman A, Morris RJ, Laskowski RA, Favia AD, Thornton JM. On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins. Proteins. 78: 1120-36. PMID 19927322 DOI: 10.1002/Prot.22633 |
0.653 |
|
| 2007 |
Kahraman A, Morris RJ, Laskowski RA, Thornton JM. Shape variation in protein binding pockets and their ligands. Journal of Molecular Biology. 368: 283-301. PMID 17337005 DOI: 10.1016/J.Jmb.2007.01.086 |
0.643 |
|
| 2007 |
Kahraman A, Morris RJ, Laskowski RA, Thornton JM. Variation of geometrical and physicochemical properties in protein binding pockets and their ligands Bmc Bioinformatics. 8. DOI: 10.1186/1471-2105-8-S8-S1 |
0.625 |
|
| 2005 |
Morris RJ, Najmanovich RJ, Kahraman A, Thornton JM. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics (Oxford, England). 21: 2347-55. PMID 15728116 DOI: 10.1093/Bioinformatics/Bti337 |
0.68 |
|
| 2005 |
Morris RJ, Kahraman A, Thornton JM. Binding pocket shape analysis for protein function prediction Acta Crystallographica Section a Foundations of Crystallography. 61: c156-c157. DOI: 10.1107/S0108767305093347 |
0.633 |
|
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