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Ernesto J. Fuentes - Publications

Affiliations: 
Biochemistry University of Iowa, Iowa City, IA 
Area:
Biochemistry, General Biophysics, Molecular Biology
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Basu S, Subedi U, Tonelli M, Afshinpour M, Tiwari N, Fuentes EJ, Chakravarty S. Assessing the functional roles of coevolving PHD finger residues. Protein Science : a Publication of the Protein Society. 33: e5065. PMID 38923615 DOI: 10.1002/pro.5065  0.34
2021 Sun YJ, Fuentes EJ. A Fluorescence-Based Assay to Determine PDZ-Ligand Binding Thermodynamics. Methods in Molecular Biology (Clifton, N.J.). 2256: 137-148. PMID 34014520 DOI: 10.1007/978-1-0716-1166-1_8  0.457
2020 Opuu V, Sun YJ, Hou T, Panel N, Fuentes EJ, Simonson T. A physics-based energy function allows the computational redesign of a PDZ domain. Scientific Reports. 10: 11150. PMID 32636412 DOI: 10.1038/S41598-020-67972-W  0.459
2020 Tiwari N, López-Redondo M, Miguel-Romero L, Kulhankova K, Cahill MP, Tran PM, Kinney KJ, Kilgore SH, Al-Tameemi H, Herfst CA, Tuffs SW, Kirby JR, Boyd JM, McCormick JK, Salgado-Pabón W, ... ... Fuentes EJ, et al. The SrrAB two-component system regulates pathogenicity through redox sensitive cysteines. Proceedings of the National Academy of Sciences of the United States of America. PMID 32354997 DOI: 10.1073/Pnas.1921307117  0.484
2019 Crosby HA, Tiwari N, Kwiecinski JM, Xu Z, Dykstra A, Jenul C, Fuentes EJ, Horswill AR. The Staphylococcus aureus ArlRS two-component system regulates virulence factor expression through MgrA. Molecular Microbiology. PMID 31618469 DOI: 10.1111/Mmi.14404  0.303
2019 Awadia S, Huq F, Arnold TR, Goicoechea SM, Sun YJ, Hou T, Kreider-Letterman G, Massimi P, Banks L, Fuentes EJ, Miller AL, Garcia-Mata R. SGEF forms a complex with Scribble and Dlg1 and regulates epithelial junctions and contractility. The Journal of Cell Biology. PMID 31248911 DOI: 10.1083/Jcb.201811114  0.321
2019 Liu X, Golden LC, Lopez JA, Shepherd TR, Yu L, Fuentes EJ. Conformational Dynamics and Cooperativity Drive the Specificity of a Protein-Ligand Interaction. Biophysical Journal. PMID 31146922 DOI: 10.1016/J.Bpj.2019.05.008  0.821
2019 Liu X, Fuentes EJ. Emerging Themes in PDZ Domain Signaling: Structure, Function, and Inhibition. International Review of Cell and Molecular Biology. 343: 129-218. PMID 30712672 DOI: 10.1016/Bs.Ircmb.2018.05.013  0.68
2019 Fuentes EJ, Joo Sun Y, Sternke M, Opuu V, Panel N, Barrick D, Simonson T. Biochemical and Structural Characterization of De Novo Designed PDZ Domains Biophysical Journal. 116: 320a. DOI: 10.1016/J.Bpj.2018.11.1739  0.528
2018 Panel N, Villa F, Fuentes EJ, Simonson T. Accurate PDZ/Peptide Binding Specificity with Additive and Polarizable Free Energy Simulations. Biophysical Journal. 114: 1091-1102. PMID 29539396 DOI: 10.1016/J.Bpj.2018.01.008  0.515
2018 Joo Sun Y, Hou T, Gakhar L, Awadia S, Garcia-Mata R, Fuentes E. Rational Design of PDZ Domain Specificity Biophysical Journal. 114: 410a. DOI: 10.1016/J.Bpj.2017.11.2270  0.714
2017 Panel N, Sun YJ, Fuentes EJ, Simonson T. A Simple PB/LIE Free Energy Function Accurately Predicts the Peptide Binding Specificity of the Tiam1 PDZ Domain. Frontiers in Molecular Biosciences. 4: 65. PMID 29018806 DOI: 10.3389/Fmolb.2017.00065  0.502
2017 Xu Z, Gakhar L, Bain FE, Spies M, Fuentes EJ. The Tiam1 Guanine Nucleotide Exchange Factor is Auto-inhibited by its Pleckstrin Homology Coiled-Coil Extension Domain. The Journal of Biological Chemistry. PMID 28882897 DOI: 10.1074/Jbc.M117.799114  0.762
2017 Mignon D, Panel N, Chen X, Fuentes EJ, Simonson T. Computational design of the Tiam1 PDZ domain and its ligand binding. Journal of Chemical Theory and Computation. PMID 28394603 DOI: 10.1021/Acs.Jctc.6B01255  0.621
2016 Liu X, Speckhard DC, Shepherd TR, Sun YJ, Hengel SR, Yu L, Fowler CA, Gakhar L, Fuentes EJ. Distinct Roles for Conformational Dynamics in Protein-Ligand Interactions. Structure (London, England : 1993). 24: 2053-2066. PMID 27998539 DOI: 10.1016/J.Str.2016.08.019  0.804
2016 Joo Sun Y, Hou T, Liu X, Gakhar L, Fuentes E. Structural and Biochemical Characterization of CASK PDZ Interaction with Protein and Lipid Binding Partners Biophysical Journal. 110: 42a. DOI: 10.1016/J.Bpj.2015.11.296  0.796
2016 Fuentes EJ, Liu X, Speckhard DC, Shepherd TR, Hengel SR, Liping L, Fowler CA, Gakhar L. Conformational Dynamics and Structure Underlie the Novel Ligand Binding Specificity of a Tiam1 PDZ Domain Mutant Biophysical Journal. 110: 514a. DOI: 10.1016/J.Bpj.2015.11.2749  0.837
2016 Litman JM, Joo Sun Y, Hou T, LuCore SD, Panel N, Simonson T, Fuentes EJ, Schnieders MJ. Protein Sequence Optimization with a Polarizable Force Field: Insights from PDZ Domains Biophysical Journal. 110: 345a-346a. DOI: 10.1016/J.Bpj.2015.11.1859  0.38
2016 Xu Z, Gakhar L, Boehm E, Washington T, Spies M, Fuentes EJ. Insights into the Autoinhibition Mechanism of the Tiam1 Guanine Nucleotide Exchange Factor Biophysical Journal. 110: 206a. DOI: 10.1016/J.Bpj.2015.11.1149  0.779
2015 Fuentes EJ, Liu X, Golden LC, Yu L. Thermodynamic and Dynamic Basis for the Broadened Ligand Specificity of a Tiam2 PDZ Domain Mutant Biophysical Journal. 108: 60a. DOI: 10.1016/J.Bpj.2014.11.360  0.702
2014 Darnell CL, Wilson JM, Tiwari N, Fuentes EJ, Kirby JR. Chemosensory regulation of a HEAT-repeat protein couples aggregation and sporulation in Myxococcus xanthus. Journal of Bacteriology. 196: 3160-8. PMID 24957622 DOI: 10.1128/Jb.01866-14  0.474
2014 Fuentes EJ, Liu X, Speckhard DC, Shepherd TR. Structural and Dynamic Features Underlie the Switch of Ligand Binding Specificity in a Tiam1 PDZ Domain Mutant Biophysical Journal. 106: 661a. DOI: 10.1016/J.Bpj.2013.11.3658  0.84
2013 Willett JW, Tiwari N, Müller S, Hummels KR, Houtman JC, Fuentes EJ, Kirby JR. Specificity residues determine binding affinity for two-component signal transduction systems. Mbio. 4: e00420-13. PMID 24194534 DOI: 10.1128/Mbio.00420-13  0.467
2013 Joshi M, Gakhar L, Fuentes EJ. High-resolution structure of the Tiam1 PHn-CC-Ex domain. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 744-52. PMID 23832200 DOI: 10.1107/S1744309113014206  0.795
2013 Liu Y, Collins C, Kiosses WB, Murray AM, Joshi M, Shepherd TR, Fuentes EJ, Tzima E. A novel pathway spatiotemporally activates Rac1 and redox signaling in response to fluid shear stress. The Journal of Cell Biology. 201: 863-73. PMID 23733346 DOI: 10.1083/Jcb.201207115  0.663
2013 Liu X, Shepherd TR, Murray AM, Xu Z, Fuentes EJ. The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics. Structure (London, England : 1993). 21: 342-54. PMID 23395182 DOI: 10.1016/J.Str.2013.01.004  0.819
2012 Fuentes EJ, Liu X, Shepherd TR, Speckhard DC, Murray AM. Specificity, Structure and Dynamics of Tiam1 PDZ Domain Ligand-Bound Complexes Biophysical Journal. 102: 411a. DOI: 10.1016/J.Bpj.2011.11.2245  0.838
2011 Shepherd TR, Fuentes EJ. Structural and thermodynamic analysis of PDZ-ligand interactions. Methods in Enzymology. 488: 81-100. PMID 21195225 DOI: 10.1016/B978-0-12-381268-1.00004-5  0.799
2011 Shepherd TR, Hard RL, Murray AM, Pei D, Fuentes EJ. Distinct ligand specificity of the Tiam1 and Tiam2 PDZ domains. Biochemistry. 50: 1296-308. PMID 21192692 DOI: 10.1021/Bi1013613  0.826
2011 Fuentes EJ, Shepherd TR. Structural and Thermodynamic Origins of Ligand Specificity in Homologous PDZ Domains from the Tiam-Family of Guanine Exchange Factors Biophysical Journal. 100: 527a. DOI: 10.1016/J.Bpj.2010.12.3081  0.833
2010 Wen H, Kim N, Fuentes EJ, Mallinger A, Gonzalez-Alegre P, Glenn KA. FBG1 is a promiscuous ubiquitin ligase that sequesters APC2 and causes S-phase arrest. Cell Cycle (Georgetown, Tex.). 9: 4506-17. PMID 21135578 DOI: 10.4161/Cc.9.22.13743  0.433
2010 Ramadugu SK, Chung YH, Fuentes EJ, Rice KG, Margulis CJ. In silico prediction of the 3D structure of trimeric asialoglycoprotein receptor bound to triantennary oligosaccharide. Journal of the American Chemical Society. 132: 9087-95. PMID 20540518 DOI: 10.1021/Ja1021766  0.384
2010 Shepherd TR, Klaus SM, Liu X, Ramaswamy S, DeMali KA, Fuentes EJ. The Tiam1 PDZ domain couples to Syndecan1 and promotes cell-matrix adhesion. Journal of Molecular Biology. 398: 730-46. PMID 20361982 DOI: 10.1016/J.Jmb.2010.03.047  0.83
2009 Petit CM, Zhang J, Sapienza PJ, Fuentes EJ, Lee AL. Hidden dynamic allostery in a PDZ domain. Proceedings of the National Academy of Sciences of the United States of America. 106: 18249-54. PMID 19828436 DOI: 10.1073/Pnas.0904492106  0.559
2009 Law AB, Fuentes EJ, Lee AL. Conservation of side-chain dynamics within a protein family. Journal of the American Chemical Society. 131: 6322-3. PMID 19374353 DOI: 10.1021/Ja809915A  0.374
2008 Fuentes EJ, Gilmore SA, Mauldin RV, Lee AL. Corrigendum to "Evaluation of Energetic and Dynamic Coupling Networks in a PDZ Domain Protein" [J. Mol. Biol. 364 (2006) 337-351] (DOI:10.1016/j.jmb.2006.08.076) Journal of Molecular Biology. 375: 1489-1490. DOI: 10.1016/J.Jmb.2007.11.058  0.447
2006 Fuentes EJ, Gilmore SA, Mauldin RV, Lee AL. Evaluation of energetic and dynamic coupling networks in a PDZ domain protein. Journal of Molecular Biology. 364: 337-51. PMID 17011581 DOI: 10.1016/J.Jmb.2006.08.076  0.511
2006 Tsonis PA, Fuentes EJ. Focus on molecules: Pax-6, the eye master. Experimental Eye Research. 83: 233-4. PMID 16563385 DOI: 10.1016/J.Exer.2005.11.019  0.413
2004 Fuentes EJ, Der CJ, Lee AL. Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. Journal of Molecular Biology. 335: 1105-15. PMID 14698303 DOI: 10.1016/J.Jmb.2003.11.010  0.606
2003 Fuentes EJ, Karnoub AE, Booden MA, Der CJ, Campbell SL. Critical role of the pleckstrin homology domain in Dbs signaling and growth regulation. The Journal of Biological Chemistry. 278: 21188-96. PMID 12637530 DOI: 10.1074/Jbc.M211792200  0.577
2002 Dai QH, Tommos C, Fuentes EJ, Blomberg MR, Dutton PL, Wand AJ. Structure of a de novo designed protein model of radical enzymes. Journal of the American Chemical Society. 124: 10952-3. PMID 12224922 DOI: 10.1021/Ja0264201  0.401
2002 Kranz JK, Flynn PF, Fuentes EJ, Wand AJ. Dissection of the pathway of molecular recognition by calmodulin. Biochemistry. 41: 2599-608. PMID 11851407 DOI: 10.1021/Bi011818F  0.525
2001 Liu W, Flynn PF, Fuentes EJ, Kranz JK, McCormick M, Wand AJ. Main chain and side chain dynamics of oxidized flavodoxin from Cyanobacterium anabaena Biochemistry. 40: 14744-14753. PMID 11732893 DOI: 10.1021/Bi011073D  0.311
1998 Fuentes EJ, Wand AJ. Local dynamics and stability of apocytochrome b562 examined by hydrogen exchange Biochemistry. 37: 3687-3698. PMID 9521687 DOI: 10.1021/bi972579s  0.306
1995 Qi PX, Fuentes EJ, Beckman RA, Di Stefano DL, Joshua Wand A. Solution structures of horse ferro- and ferricytochrome c using 2D and 3D 1H NMR and restrained simulated annealing Techniques in Protein Chemistry. 6: 511-519. DOI: 10.1016/S1080-8914(06)80062-1  0.333
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