Vicki L. Chandler - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 
Area:
Molecular Biology, Plant Physiology

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Peterson M, Chandler VL, Bosco G. High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1. Genes. 4: 226-43. PMID 24705161 DOI: 10.3390/Genes4020226  1
2013 Martienssen RA, Chandler VL. Molecular Mechanisms of Transposon Epigenetic Regulation Plant Transposons and Genome Dynamics in Evolution. 71-92. DOI: 10.1002/9781118500156.ch5  1
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  1
2010 Brzeska K, Brzeski J, Smith J, Chandler VL. Transgenic expression of CBBP, a CXC domain protein, establishes paramutation in maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 5516-21. PMID 20212123 DOI: 10.1073/Pnas.1001576107  1
2009 Sidorenko L, Dorweiler JE, Cigan AM, Arteaga-Vazquez M, Vyas M, Kermicle J, Jurcin D, Brzeski J, Cai Y, Chandler VL. A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. Plos Genetics. 5: e1000725. PMID 19936058 DOI: 10.1371/Journal.Pgen.1000725  1
2008 Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga-Vazquez M, Sidorenko L, Jeong DH, Yen Y, Green PJ, Chandler VL, Meyers BC. Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proceedings of the National Academy of Sciences of the United States of America. 105: 14958-63. PMID 18815367 DOI: 10.1073/Pnas.0808066105  1
2008 Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. Bmc Plant Biology. 8: 33. PMID 18402703 DOI: 10.1186/1471-2229-8-33  1
2007 Chandler VL. Paramutation: from maize to mice. Cell. 128: 641-5. PMID 17320501 DOI: 10.1016/J.Cell.2007.02.007  1
2006 Alleman M, Sidorenko L, McGinnis K, Seshadri V, Dorweiler JE, White J, Sikkink K, Chandler VL. An RNA-dependent RNA polymerase is required for paramutation in maize. Nature. 442: 295-8. PMID 16855589 DOI: 10.1038/Nature04884  1
2006 McGinnis KM, Springer C, Lin Y, Carey CC, Chandler V. Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation. Genetics. 173: 1637-47. PMID 16702420 DOI: 10.1534/Genetics.106.058669  1
2005 McGinnis K, Chandler V, Cone K, Kaeppler H, Kaeppler S, Kerschen A, Pikaard C, Richards E, Sidorenko L, Smith T, Springer N, Wulan T. Transgene-induced RNA interference as a tool for plant functional genomics. Methods in Enzymology. 392: 1-24. PMID 15644172 DOI: 10.1016/S0076-6879(04)92001-0  1
2004 Chandler VL. Poetry of b1 paramutation: cis- and trans-chromatin communication. Cold Spring Harbor Symposia On Quantitative Biology. 69: 355-61. PMID 16117668 DOI: 10.1101/Sqb.2004.69.355  1
2004 Hernandez JM, Heine GF, Irani NG, Feller A, Kim MG, Matulnik T, Chandler VL, Grotewold E. Different mechanisms participate in the R-dependent activity of the R2R3 MYB transcription factor C1. The Journal of Biological Chemistry. 279: 48205-13. PMID 15347654 DOI: 10.1074/Jbc.M407845200  1
2004 Chandler VL, Stam M. Chromatin conversations: mechanisms and implications of paramutation. Nature Reviews. Genetics. 5: 532-44. PMID 15211355 DOI: 10.1038/Nrg1378  1
2004 Carey CC, Strahle JT, Selinger DA, Chandler VL. Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. The Plant Cell. 16: 450-64. PMID 14742877 DOI: 10.1105/Tpc.018796  1
2003 Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiology. 132: 907-25. PMID 12805620 DOI: 10.1104/Pp.102.013722  1
2002 Chandler VL, Brendel V. The Maize Genome Sequencing Project. Plant Physiology. 130: 1594-7. PMID 12481042 DOI: 10.1104/Pp.015594  1
2002 Stam M, Belele C, Ramakrishna W, Dorweiler JE, Bennetzen JL, Chandler VL. The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics. 162: 917-30. PMID 12399399  1
2002 Stam M, Belele C, Dorweiler JE, Chandler VL. Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation. Genes & Development. 16: 1906-18. PMID 12154122 DOI: 10.1101/Gad.1006702  1
2002 Lisch D, Carey CC, Dorweiler JE, Chandler VL. A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proceedings of the National Academy of Sciences of the United States of America. 99: 6130-5. PMID 11959901 DOI: 10.1073/Pnas.052152199  1
2002 Chandler VL, Stam M, Sidorenko LV. Long-distance cis and trans interactions mediate paramutation. Advances in Genetics. 46: 215-34. PMID 11931225 DOI: 10.1016/S0065-2660(02)46008-7  1
2002 Fernandes J, Brendel V, Gai X, Lal S, Chandler VL, Elumalai RP, Galbraith DW, Pierson EA, Walbot V. Comparison of RNA expression profiles based on maize expressed sequence tag frequency analysis and micro-array hybridization. Plant Physiology. 128: 896-910. PMID 11891246 DOI: 10.1104/Pp.010681  1
2001 Bennetzen JL, Chandler VL, Schnable P. National Science Foundation-sponsored workshop report. Maize genome sequencing project. Plant Physiology. 127: 1572-8. PMID 11743101 DOI: 10.1104/Pp.010817  1
2001 Selinger DA, Chandler VL. B-Bolivia, an allele of the maize b1 gene with variable expression, contains a high copy retrotransposon-related sequence immediately upstream. Plant Physiology. 125: 1363-79. PMID 11244116 DOI: 10.1104/Pp.125.3.1363  1
2001 Chandler VL, Wessler S. Grasses. a collective model genetic system. Plant Physiology. 125: 1155-6. PMID 11244093 DOI: 10.1104/Pp.125.3.1155  1
2001 Chandler VL, Vaucheret H. Gene activation and gene silencing. Plant Physiology. 125: 145-8. PMID 11154319 DOI: 10.1104/Pp.125.1.145  1
2000 Grotewold E, Sainz MB, Tagliani L, Hernandez JM, Bowen B, Chandler VL. Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R. Proceedings of the National Academy of Sciences of the United States of America. 97: 13579-84. PMID 11095727 DOI: 10.1073/Pnas.250379897  1
2000 Dorweiler JE, Carey CC, Kubo KM, Hollick JB, Kermicle JL, Chandler VL. mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. The Plant Cell. 12: 2101-18. PMID 11090212 DOI: 10.1105/Tpc.12.11.2101  1
2000 Chandler VL, Eggleston WB, Dorweiler JE. Paramutation in maize. Plant Molecular Biology. 43: 121-45. PMID 10999400 DOI: 10.1023/A:1006499808317  1
2000 Chandler VL, Jorgensen R. Silencing Morpheus awakens transgenes. Nature Biotechnology. 18: 602-3. PMID 10835595 DOI: 10.1038/76436  1
1999 Selinger DA, Chandler VL. Major recent and independent changes in levels and patterns of expression have occurred at the b gene, a regulatory locus in maize. Proceedings of the National Academy of Sciences of the United States of America. 96: 15007-12. PMID 10611328 DOI: 10.1073/Pnas.96.26.15007  1
1999 Selinger DA, Chandler VL. A mutation in the pale aleurone color1 gene identifies a novel regulator of the maize anthocyanin pathway. The Plant Cell. 11: 5-14. PMID 9878628 DOI: 10.1105/Tpc.11.1.5  1
1998 Lesnick ML, Chandler VL. Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters. Plant Physiology. 117: 437-45. PMID 9625696 DOI: 10.1104/Pp.117.2.437  1
1997 Hollick JB, Dorweiler JE, Chandler VL. Paramutation and related allelic interactions. Trends in Genetics : Tig. 13: 302-8. PMID 9260515 DOI: 10.1016/S0168-9525(97)01184-0  1
1997 Sainz MB, Grotewold E, Chandler VL. Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins. The Plant Cell. 9: 611-25. PMID 9144964 DOI: 10.1105/Tpc.9.4.611  1
1997 Sainz MB, Goff SA, Chandler VL. Extensive mutagenesis of a transcriptional activation domain identifies single hydrophobic and acidic amino acids important for activation in vivo. Molecular and Cellular Biology. 17: 115-22. PMID 8972191 DOI: 10.1128/Mcb.17.1.115  1
1995 Patterson GI, Chandler VL. Paramutation in maize and related allelic interactions. Current Topics in Microbiology and Immunology. 197: 121-41. PMID 7493488 DOI: 10.1007/978-3-642-79145-1_9  1
1994 Harris LJ, Currie K, Chandler VL. Large tandem duplication associated with a Mu2 insertion in Zea mays B-Peru gene. Plant Molecular Biology. 25: 817-28. PMID 8075398 DOI: 10.1007/Bf00028876  1
1994 Bestor TH, Chandler VL, Feinberg AP. Epigenetic effects in eukaryotic gene expression. Developmental Genetics. 15: 458-62. PMID 7834904 DOI: 10.1002/Dvg.1020150603  1
1992 Goff SA, Cone KC, Chandler VL. Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes & Development. 6: 864-75. PMID 1577278 DOI: 10.1101/Gad.6.5.864  1
1992 Radicella JP, Brown D, Tolar LA, Chandler VL. Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production. Genes & Development. 6: 2152-64. PMID 1427078 DOI: 10.1101/gad.6.11.2152  1
1992 Chandler VL, Hardeman KJ. The Mu elements of Zea mays. Advances in Genetics. 30: 77-122. PMID 1333722 DOI: 10.1016/S0065-2660(08)60319-3  1
1991 Radicella JP, Turks D, Chandler VL. Cloning and nucleotide sequence of a cDNA encoding B-Peru, a regulatory protein of the anthocyanin pathway in maize. Plant Molecular Biology. 17: 127-30. PMID 1868212 DOI: 10.1007/BF00036813  1
1989 Levy AA, Britt AB, Luehrsen KR, Chandler VL, Warren C, Walbot V. Developmental and genetic aspects of Mutator excision in maize. Developmental Genetics. 10: 520-31. PMID 2557992 DOI: 10.1002/Dvg.1020100611  1
1989 Hardeman KJ, Chandler VL. Characterization of bz1 mutants isolated from mutator stocks with high and low numbers of Mu1 elements. Developmental Genetics. 10: 460-72. PMID 2557990 DOI: 10.1002/Dvg.1020100607  1
1989 Talbert LE, Patterson GI, Chandler VL. Mu transposable elements are structurally diverse and distributed throughout the genus Zea. Journal of Molecular Evolution. 29: 28-39. PMID 2549259 DOI: 10.1007/Bf02106179  1
1989 Chandler VL, Radicella JP, Robbins TP, Chen J, Turks D. Two regulatory genes of the maize anthocyanin pathway are homologous: isolation of B utilizing R genomic sequences. The Plant Cell. 1: 1175-83. PMID 2535537 DOI: 10.1105/Tpc.1.12.1175  1
1988 Talbert LE, Chandler VL. Characterization of a highly conserved sequence related to mutator transposable elements in maize. Molecular Biology and Evolution. 5: 519-29. PMID 2848175 DOI: 10.1093/Oxfordjournals.Molbev.A040510  1
1986 Chandler VL, Walbot V. DNA modification of a maize transposable element correlates with loss of activity. Proceedings of the National Academy of Sciences of the United States of America. 83: 1767-71. PMID 3006070 DOI: 10.1073/Pnas.83.6.1767  1
1983 Yamamoto KR, Payvar F, Firestone GL, Maler BA, Wrange O, Carlstedt-Duke J, Gustafsson JA, Chandler VL. Biological activity of cloned mammary tumor virus DNA fragments that bind purified glucocorticoid receptor protein in vitro. Cold Spring Harbor Symposia On Quantitative Biology. 47: 977-84. PMID 6305596 DOI: 10.1101/Sqb.1983.047.01.111  1
1983 Chandler VL, Maler BA, Yamamoto KR. DNA sequences bound specifically by glucocorticoid receptor in vitro render a heterologous promoter hormone responsive in vivo. Cell. 33: 489-99. PMID 6190571 DOI: 10.1016/0092-8674(83)90430-0  1
1982 Payvar F, Firestone GL, Ross SR, Chandler VL, Wrange O, Carlstedt-Duke J, Gustafsson JA, Yamamoto KR. Multiple specific binding sites for purified glucocorticoid receptors on mammary tumor virus DNA. Journal of Cellular Biochemistry. 19: 241-7. PMID 6296168 DOI: 10.1002/Jcb.240190305  1
1981 Yamamoto KR, Chandler VL, Ross SR, Ucker DS, Ring JC, Feinstein SC. Integration and activity of mammary tumor virus genes: regulation by hormone receptors and chromosomal position. Cold Spring Harbor Symposia On Quantitative Biology. 45: 687-97. PMID 6266760 DOI: 10.1101/Sqb.1981.045.01.086  1
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