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Jeremy R. Sanford, Ph.D. - Publications

Affiliations: 
2001 Case Western Reserve University School of Medicine, Cleveland, OH, United States 
Area:
Molecular Biology
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ritter A, Draper JM, Vollmers C, Sanford J. Long read subcellular fractionation and sequencing reveals the translational fate of full-length mRNA isoforms during neuronal differentiation. Genome Research. PMID 38839373 DOI: 10.1101/gr.279170.124  0.386
2023 Tse V, Chacaltana G, Gutierrez M, Forino NM, Jimenez AG, Tao H, Do PH, Oh C, Chary P, Quesada I, Hamrick A, Lee S, Stone MD, Sanford JR. An intronic RNA element modulates Factor VIII exon-16 splicing. Nucleic Acids Research. PMID 37962303 DOI: 10.1093/nar/gkad1034  0.312
2023 Draper J, Philipp J, Neeb Z, Thomas R, Katzman S, Salama S, Haussler D, Sanford JR. Isoform-specific translational control is evolutionarily conserved in primates. Biorxiv : the Preprint Server For Biology. PMID 37131629 DOI: 10.1101/2023.04.21.537863  0.437
2023 Tse V, Chacaltana G, Gutierrez M, Forino NM, Jimenez AG, Tao H, Do PH, Oh C, Chary P, Quesada I, Hamrick A, Lee S, Stone MD, Sanford JR. Rescue of blood coagulation Factor VIII exon-16 mis-splicing by antisense oligonucleotides. Biorxiv : the Preprint Server For Biology. PMID 37034721 DOI: 10.1101/2023.03.31.535160  0.321
2021 Tran TM, Philipp J, Bassi JS, Nibber N, Draper JM, Lin TL, Palanichamy JK, Jaiswal AK, Silva O, Paing M, King J, Katzman S, Sanford JR, Rao DS. The RNA-binding protein IGF2BP3 is critical for MLL-AF4-mediated leukemogenesis. Leukemia. PMID 34321607 DOI: 10.1038/s41375-021-01346-7  0.41
2018 Howard JM, Lin H, Wallace AJ, Kim G, Draper JM, Haeussler M, Katzman S, Toloue M, Liu Y, Sanford JR. HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo. Genome Research. PMID 29650551 DOI: 10.1101/Gr.229062.117  0.555
2017 Sanford JR, Penalva LOF. The 3' end of the story: deciphering combinatorial interactions that control mRNA fate. Genome Biology. 18: 227. PMID 29187223 DOI: 10.1186/S13059-017-1360-6  0.516
2017 Penalva LO, Sanford JR. From mechanisms to therapy: RNA processing's impact on human genetics. Human Genetics. PMID 28866814 DOI: 10.1007/S00439-017-1841-4  0.324
2016 Martinez-Nunez RT, Wallace A, Coyne D, Jansson L, Rush M, Ennajdaoui H, Katzman S, Bailey J, Deinhardt K, Sanchez-Elsner T, Sanford JR. Modulation of nonsense mediated decay by rapamycin. Nucleic Acids Research. PMID 27899591 DOI: 10.1093/Nar/Gkw1109  0.519
2016 Ennajdaoui H, Howard JM, Sterne-Weiler T, Jahanbani F, Coyne DJ, Uren PJ, Dargyte M, Katzman S, Draper JM, Wallace A, Cazarez O, Burns SC, Qiao M, Hinck L, Smith AD, ... ... Sanford JR, et al. IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC. Cell Reports. PMID 27210763 DOI: 10.1016/J.Celrep.2016.04.083  0.502
2016 Palanichamy JK, Tran TM, Howard JM, Contreras JR, Fernando TR, Sterne-Weiler T, Katzman S, Toloue M, Yan W, Basso G, Pigazzi M, Sanford JR, Rao DS. RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation. The Journal of Clinical Investigation. PMID 26974154 DOI: 10.1172/Jci80046  0.481
2016 Martinez-Nunez RT, Sanford JR. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq. Methods in Molecular Biology (Clifton, N.J.). 1358: 99-108. PMID 26463379 DOI: 10.1007/978-1-4939-3067-8_6  0.473
2015 Hansen HT, Rasmussen SH, Adolph SK, Plass M, Krogh A, Sanford J, Nielsen FC, Christiansen J. Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation. Genome Biology. 16: 123. PMID 26054396 DOI: 10.1186/S13059-015-0687-0  0.488
2015 Howard JM, Sanford JR. The RNAissance family: SR proteins as multifaceted regulators of gene expression. Wiley Interdisciplinary Reviews. Rna. 6: 93-110. PMID 25155147 DOI: 10.1002/Wrna.1260  0.631
2015 Tran TM, Palanichamy JK, Howard J, Contreras JR, Fernando T, Basso G, Pigazzi M, Sanford JR, Rao DS. Characterizing the Function of an RNA Binding Protein, IGF2BP3, in Hematopoiesis Blood. 126: 3664-3664. DOI: 10.1182/Blood.V126.23.3664.3664  0.479
2014 Sterne-Weiler T, Sanford JR. Exon identity crisis: disease-causing mutations that disrupt the splicing code. Genome Biology. 15: 201. PMID 24456648 DOI: 10.1186/Gb4150  0.449
2014 Mort M, Sterne-Weiler T, Li B, Ball EV, Cooper DN, Radivojac P, Sanford JR, Mooney SD. MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing. Genome Biology. 15: R19. PMID 24451234 DOI: 10.1186/Gb-2014-15-1-R19  0.381
2014 Roberts JM, Ennajdaoui H, Edmondson C, Wirth B, Sanford JR, Chen B. Splicing factor TRA2B is required for neural progenitor survival. The Journal of Comparative Neurology. 522: 372-92. PMID 23818142 DOI: 10.1002/Cne.23405  0.466
2013 Sterne-Weiler T, Martinez-Nunez RT, Howard JM, Cvitovik I, Katzman S, Tariq MA, Pourmand N, Sanford JR. Frac-seq reveals isoform-specific recruitment to polyribosomes. Genome Research. 23: 1615-23. PMID 23783272 DOI: 10.1101/Gr.148585.112  0.502
2012 Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD. Site identification in high-throughput RNA-protein interaction data. Bioinformatics (Oxford, England). 28: 3013-20. PMID 23024010 DOI: 10.1093/Bioinformatics/Bts569  0.532
2011 Teng M, Wang Y, Wang G, Jung J, Edenberg HJ, Sanford JR, Liu Y. Prioritizing single-nucleotide variations that potentially regulate alternative splicing. Bmc Proceedings. 5: S40. PMID 22373210 DOI: 10.1186/1753-6561-5-S9-S40  0.449
2011 Wang X, Juan L, Lv J, Wang K, Sanford JR, Liu Y. Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1. Bmc Genomics. 12: S8. PMID 22369183 DOI: 10.1186/1471-2164-12-S5-S8  0.511
2011 Sterne-Weiler T, Howard J, Mort M, Cooper DN, Sanford JR. Loss of exon identity is a common mechanism of human inherited disease. Genome Research. 21: 1563-71. PMID 21750108 DOI: 10.1101/Gr.118638.110  0.345
2009 Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y. Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing. Bmc Genomics. 10: S4. PMID 19594881 DOI: 10.1186/1471-2164-10-S1-S4  0.446
2009 Butler JS, Palam LR, Tate CM, Sanford JR, Wek RC, Skalnik DG. DNA Methyltransferase protein synthesis is reduced in CXXC finger protein 1-deficient embryonic stem cells. Dna and Cell Biology. 28: 223-31. PMID 19388845 DOI: 10.1089/Dna.2009.0854  0.409
2009 Henao-Mejia J, Liu Y, Park IW, Zhang J, Sanford J, He JJ. Suppression of HIV-1 Nef translation by Sam68 mutant-induced stress granules and nef mRNA sequestration. Molecular Cell. 33: 87-96. PMID 19150430 DOI: 10.1016/J.Molcel.2008.11.024  0.351
2009 Sanford JR, Wang X, Mort M, Vanduyn N, Cooper DN, Mooney SD, Edenberg HJ, Liu Y. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Research. 19: 381-94. PMID 19116412 DOI: 10.1101/Gr.082503.108  0.555
2008 Sanford JR, Coutinho P, Hackett JA, Wang X, Ranahan W, Caceres JF. Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF. Plos One. 3: e3369. PMID 18841201 DOI: 10.1371/Journal.Pone.0003369  0.605
2008 Michlewski G, Sanford JR, Cáceres JF. The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1. Molecular Cell. 30: 179-89. PMID 18439897 DOI: 10.1016/J.Molcel.2008.03.013  0.574
2008 Wang X, Wang G, Shen C, Li L, Wang X, Mooney SD, Edenberg HJ, Sanford JR, Liu Y. Using RNase sequence specificity to refine the identification of RNA-protein binding regions. Bmc Genomics. 9: S17. PMID 18366606 DOI: 10.1186/1471-2164-9-S1-S17  0.462
2008 Liang F, Luo Y, Dong Y, Walls CD, Liang J, Jiang HY, Sanford JR, Wek RC, Zhang ZY. Translational control of C-terminal Src kinase (Csk) expression by PRL3 phosphatase. The Journal of Biological Chemistry. 283: 10339-46. PMID 18268019 DOI: 10.1074/Jbc.M708285200  0.375
2005 Blaustein M, Pelisch F, Tanos T, Muñoz MJ, Wengier D, Quadrana L, Sanford JR, Muschietti JP, Kornblihtt AR, Cáceres JF, Coso OA, Srebrow A. Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT. Nature Structural & Molecular Biology. 12: 1037-44. PMID 16299516 DOI: 10.1038/Nsmb1020  0.663
2005 Sanford JR, Ellis JD, Cazalla D, Cáceres JF. Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor. Proceedings of the National Academy of Sciences of the United States of America. 102: 15042-7. PMID 16210245 DOI: 10.1073/Pnas.0507827102  0.599
2005 Sanford JR, Ellis J, Cáceres JF. Multiple roles of arginine/serine-rich splicing factors in RNA processing. Biochemical Society Transactions. 33: 443-6. PMID 15916537 DOI: 10.1042/Bst0330443  0.647
2005 Cazalla D, Sanford JR, Cáceres JF. A rapid and efficient protocol to purify biologically active recombinant proteins from mammalian cells. Protein Expression and Purification. 42: 54-8. PMID 15878828 DOI: 10.1016/J.Pep.2005.03.035  0.527
2005 White SJ, Roberts MA, Sanford JR, Cáceres JF, Newby AC. 534. Optimising Expression Cassettes for Vascular Gene Expression Molecular Therapy. 11. DOI: 10.1016/J.Ymthe.2005.07.074  0.459
2004 Sanford JR, Caceres JF. Pre-mRNA splicing: life at the centre of the central dogma. Journal of Cell Science. 117: 6261-3. PMID 15591240 DOI: 10.1242/Jcs.01513  0.479
2004 Sanford JR, Gray NK, Beckmann K, Cáceres JF. A novel role for shuttling SR proteins in mRNA translation. Genes & Development. 18: 755-68. PMID 15082528 DOI: 10.1101/Gad.286404  0.619
2004 Niksic M, Slight J, Sanford JR, Caceres JF, Hastie ND. The Wilms' tumour protein (WT1) shuttles between nucleus and cytoplasm and is present in functional polysomes. Human Molecular Genetics. 13: 463-71. PMID 14681305 DOI: 10.1093/Hmg/Ddh040  0.559
2003 Sanford JR, Longman D, Cáceres JF. Multiple roles of the SR protein family in splicing regulation. Progress in Molecular and Subcellular Biology. 31: 33-58. PMID 12494762 DOI: 10.1007/978-3-662-09728-1_2  0.628
2001 Sanford JR, Bruzik JP. Regulation of SR protein localization during development. Proceedings of the National Academy of Sciences of the United States of America. 98: 10184-9. PMID 11526235 DOI: 10.1073/Pnas.181340498  0.728
2000 Capellari S, Parchi P, Russo CM, Sanford J, Sy MS, Gambetti P, Petersen RB. Effect of the E200K mutation on prion protein metabolism. Comparative study of a cell model and human brain. The American Journal of Pathology. 157: 613-22. PMID 10934164 DOI: 10.1016/S0002-9440(10)64572-5  0.311
1999 Sanford JR, Bruzik JP. SR proteins are required for nematode trans-splicing in vitro. Rna (New York, N.Y.). 5: 918-28. PMID 10411135 DOI: 10.1017/S1355838299990234  0.724
1999 Sanford JR, Bruzik JP. Developmental regulation of SR protein phosphorylation and activity. Genes & Development. 13: 1513-8. PMID 10385619 DOI: 10.1101/Gad.13.12.1513  0.713
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