Philipp F Lange - Related publications

University of British Columbia (UBC) 
Cancer, Proteomics, Childhood Cancer, Rare Disease, Precision Medicine, Post translational protein modification, Proteoforms, Mass Spectrometry
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Bosch JA, Chen CL, Perrimon N. Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews. Developmental Biology. e392. PMID 32909689 DOI: 10.1002/wdev.392   
2020 Winkler R. ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities. Journal of Proteomics. 230: 103985. PMID 32956841 DOI: 10.1016/j.jprot.2020.103985   
2020 Pino LK, Rose J, O'Broin A, Shah S, Schilling B. Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications. Biochemical Society Transactions. PMID 33079175 DOI: 10.1042/BST20191091   
2020 Cho KF, Branon TC, Udeshi ND, Myers SA, Carr SA, Ting AY. Proximity labeling in mammalian cells with TurboID and split-TurboID. Nature Protocols. PMID 33139955 DOI: 10.1038/s41596-020-0399-0   
2020 Yang K, Zeng L, Ge A, Pan X, Bao T, Long Z, Tong Q, Yuan M, Zhu X, Ge J, Huang Z. Integrating systematic biological and proteomics strategies to explore the pharmacological mechanism of danshen yin modified on atherosclerosis. Journal of Cellular and Molecular Medicine. PMID 33140562 DOI: 10.1111/jcmm.15979   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Vitorino R, Guedes S, Trindade F, Correia I, Moura G, Carvalho P, Santos M, Amado F. sequencing of proteins by mass spectrometry. Expert Review of Proteomics. PMID 33016158 DOI: 10.1080/14789450.2020.1831387   
2020 Zhao B, Zhang Z, Chen X, Shen Y, Qin Y, Yang X, Xing Z, Zhang S, Long X, Zhang Y, An S, Wu H, Qi Y. The important roles of protein SUMOylation in the occurrence and development of leukemia and clinical implications. Journal of Cellular Physiology. PMID 33151565 DOI: 10.1002/jcp.30143   
2020 Umstead A, Soliman AS, Lamp J, Vega IE. Validation of recombinant human protein purified from bacteria: an important step to increase scientific rigor. Analytical Biochemistry. 113999. PMID 33098768 DOI: 10.1016/j.ab.2020.113999   
2020 Samodova D, Hosfield CM, Cramer CN, Giuli MV, Cappellini E, Franciosa G, Rosenblatt M, Kelstrup CD, Olsen JV. ProAlanase is an effective alternative to trypsin for proteomics applications and disulfide bond mapping. Molecular & Cellular Proteomics : McP. PMID 33020190 DOI: 10.1074/mcp.TIR120.002129   
2020 Masuda T, Mori A, Ito S, Ohtsuki S. Quantitative and targeted proteomics-based identification and validation of drug efficacy biomarkers. Drug Metabolism and Pharmacokinetics. PMID 33097418 DOI: 10.1016/j.dmpk.2020.09.006   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Oi C, Mochrie SGJ, Horrocks MH, Regan L. PAINT using proteins: A new brush for super-resolution artists. Protein Science : a Publication of the Protein Society. PMID 32949055 DOI: 10.1002/pro.3953   
2020 Jha K, Saha S. Amalgamation of 3D structure and sequence information for protein-protein interaction prediction. Scientific Reports. 10: 19171. PMID 33154416 DOI: 10.1038/s41598-020-75467-x   
2020 Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, et al. A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways. Methodsx. 7: 101053. PMID 33024710 DOI: 10.1016/j.mex.2020.101053   
2020 Nash MA. Single-molecule and Single-cell Approaches in Molecular Bioengineering. Chimia. 74: 704-709. PMID 32958108 DOI: 10.2533/chimia.2020.704   
2020 Wegner LH, Hao Z. A quantitative approach relating emergent features of complex traits to protein expression. Progress in Biophysics and Molecular Biology. PMID 33035591 DOI: 10.1016/j.pbiomolbio.2020.10.002   
2020 Agostino M. Comprehensive analysis of carbohydrate-protein recognition in the Protein Data Bank. Carbohydrate Research. 498: 108180. PMID 33096507 DOI: 10.1016/j.carres.2020.108180   
2020 Elahi A, Babamir SM. Identification of Protein Complexes Based on Core-Attachment Structure and Combination of Centrality Measures and Biological Properties in PPI Weighted Networks. The Protein Journal. PMID 33040223 DOI: 10.1007/s10930-020-09922-z   
2020 Hegazy M, Cohen-Barak E, Koetsier JL, Najor NA, Arvanitis C, Sprecher E, Green KJ, Godsel LM. Proximity Ligation Assay for Detecting Protein-Protein Interactions and Protein Modifications in Cells and Tissues in Situ. Current Protocols in Cell Biology. 89: e115. PMID 33044803 DOI: 10.1002/cpcb.115   
2020 Román-Meléndez GD, Venkataraman T, Monaco DR, Larman HB. Protease Activity Profiling via Programmable Phage Display of Comprehensive Proteome-Scale Peptide Libraries. Cell Systems. 11: 375-381.e4. PMID 33099407 DOI: 10.1016/j.cels.2020.08.013   
2020 Samoudi M, Kuo CC, Robinson CM, Shams-Ud-Doha K, Schinn SM, Kol S, Weiss L, Petersen Bjorn S, Voldborg BG, Rosa Campos A, Lewis NE. In situ detection of protein interactions for recombinant therapeutic enzymes. Biotechnology and Bioengineering. PMID 33169829 DOI: 10.1002/bit.27621   
2020 Kraus A, Weskamp M, Zierles J, Balzer M, Busch R, Eisfeld J, Lambertz J, Nowaczyk MM, Narberhaus F. Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. Journal of Bacteriology. 202. PMID 33093235 DOI: 10.1128/JB.00309-20   
2020 Zhang J, Lv L, Lu D, Kong D, Al-Alashaari MAA, Zhao X. Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors. Bmc Bioinformatics. 21: 480. PMID 33109082 DOI: 10.1186/s12859-020-03826-6   
2020 Badal VD, Kundrotas PJ, Vakser IA. Text mining for modeling of protein complexes enhanced by machine learning. Bioinformatics (Oxford, England). PMID 32960948 DOI: 10.1093/bioinformatics/btaa823   
2020 Rinschen MM, Saez-Rodriguez J. The tissue proteome in the multi-omic landscape of kidney disease. Nature Reviews. Nephrology. PMID 33028957 DOI: 10.1038/s41581-020-00348-5   
2020 Valdez-Sinon AN, Gokhale A, Faundez V, Bassell GJ. Protocol for Immuno-Enrichment of FLAG-Tagged Protein Complexes. Star Protocols. 1: 100083. PMID 33111116 DOI: 10.1016/j.xpro.2020.100083   
2020 Lamb JR, Jennings LL, Gudmundsdottir V, Gudnason V, Emilsson V. It's in Our Blood: A Glimpse of Personalized Medicine. Trends in Molecular Medicine. PMID 32988739 DOI: 10.1016/j.molmed.2020.09.003   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Eckhard U, Blöchl C, Jenkins BGL, Mansfield MJ, Huber CG, Doxey AC, Brandstetter H. Identification and characterization of the proteolytic flagellin from the common freshwater bacterium Hylemonella gracilis. Scientific Reports. 10: 19052. PMID 33149258 DOI: 10.1038/s41598-020-76010-8   
2020 Gaynor AS, Chen W. Conditional Protein Rescue by Binding-Induced Protective Shielding. Acs Synthetic Biology. PMID 33025786 DOI: 10.1021/acssynbio.0c00367   
2020 Das S, Scholes HM, Sen N, Orengo C. CATH functional families predict functional sites in proteins. Bioinformatics (Oxford, England). PMID 33135053 DOI: 10.1093/bioinformatics/btaa937   
2020 Ham YH, Chan KKJ, Madej D, Lam H, Chan W. Proteomics Study of DNA-Protein Crosslinks in Methylmethanesulfonate and Fe-EDTA-Exposed Human Cells. Chemical Research in Toxicology. PMID 33104331 DOI: 10.1021/acs.chemrestox.0c00289   
2020 Wang L, Xu X, Jiang Z, You Q. Modulation of protein fate decision by small molecules: targeting molecular chaperone machinery. Acta Pharmaceutica Sinica. B. 10: 1904-1925. PMID 33163343 DOI: 10.1016/j.apsb.2020.01.018   
2020 Liu S, Kang Y, Zhang C, Lou Y, Li X, Lu L, Qi Z, Jian H, Zhou H. Isobaric Tagging for Relative and Absolute Protein Quantification (iTRAQ)-Based Quantitative Proteomics Analysis of Differentially Expressed Proteins 1 Week After Spinal Cord Injury in a Rat Model. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e924266. PMID 33144554 DOI: 10.12659/MSM.924266   
2020 Cao X, Wang Y, Rogers J, Hartson S, Kanost MR, Jiang H. Changes in composition and levels of hemolymph proteins during metamorphosis of Manduca sexta. Insect Biochemistry and Molecular Biology. 103489. PMID 33096211 DOI: 10.1016/j.ibmb.2020.103489   
2020 Veith PD, Gorasia DG, Reynolds EC. Towards defining the outer membrane proteome of Porphyromonas gingivalis. Molecular Oral Microbiology. PMID 33124778 DOI: 10.1111/omi.12320   
2020 Vidović M, Franchin C, Morina F, Veljović-Jovanović S, Masi A, Arrigoni G. Efficient protein extraction for shotgun proteomics from hydrated and desiccated leaves of resurrection Ramonda serbica plants. Analytical and Bioanalytical Chemistry. PMID 33037906 DOI: 10.1007/s00216-020-02965-2   
2020 Panda A, Rangani J, Parida AK. Comprehensive proteomic analysis revealing multifaceted regulatory network of the xero-halophyte Haloxylon salicornicum involved in salt tolerance. Journal of Biotechnology. 324: 143-161. PMID 33068696 DOI: 10.1016/j.jbiotec.2020.10.011   
2020 Vishnoi S, Matre H, Garg P, Pandey SK. Artificial intelligence and machine learning for protein toxicity prediction using proteomics data. Chemical Biology & Drug Design. 96: 902-920. PMID 33058462 DOI: 10.1111/cbdd.13701   
2020 Sinha S, Lynn AM, Desai DK. Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study. Bmc Bioinformatics. 21: 466. PMID 33076816 DOI: 10.1186/s12859-020-03794-x   
2020 Deighan WI, Winton VJ, Melani RD, Anderson LC, McGee JP, Schachner LF, Barnidge D, Murray D, Alexander HD, Gibson DS, Deery MJ, McNicholl FP, McLaughlin J, Kelleher NL, Thomas PM. Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing. Clinical Chemistry and Laboratory Medicine. PMID 33079696 DOI: 10.1515/cclm-2020-1072   
2020 Zhao B, Katuwawala A, Oldfield CJ, Dunker AK, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L. DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research. PMID 33119734 DOI: 10.1093/nar/gkaa931   
2020 Klimpel A, Stillger K, Wiederstein JL, Krüger M, Neundorf I. Cell-permeable CaaX-peptides affect K-Ras downstream signaling and promote cell death in cancer cells. The Febs Journal. PMID 33112492 DOI: 10.1111/febs.15612   
2020 Trueba-Santiso A, Wasmund K, Soder-Walz JM, Marco-Urrea E, Adrian L. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Strain BRE15M. Journal of Proteome Research. PMID 32975419 DOI: 10.1021/acs.jproteome.0c00569   
2020 Siau JW, Nonis S, Chee S, Koh LQ, Ferrer FJ, Brown CJ, Ghadessy FJ. Directed co-evolution of interacting protein-peptide pairs by compartmentalized two-hybrid replication (C2HR). Nucleic Acids Research. PMID 33104786 DOI: 10.1093/nar/gkaa933   
2020 Kumar A, Dubey R, Singhai S, Konar AD, Basu A. Structural Characterization with Light Scattering: A Tool for Rationally designing Protein Formulations. Analytical Biochemistry. 113979. PMID 33035463 DOI: 10.1016/j.ab.2020.113979   
2020 Landegren U, Hammond M. Cancer diagnostics based on plasma protein biomarkers: hard times but great expectations. Molecular Oncology. PMID 33012111 DOI: 10.1002/1878-0261.12809   
2020 Nweke EE, Naicker P, Aron S, Stoychev S, Devar J, Tabb DL, Omoshoro-Jones J, Smith M, Candy G. SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways. Plos One. 15: e0240453. PMID 33048956 DOI: 10.1371/journal.pone.0240453