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Charles L. Brooks, III

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
computational biophysics
Website:
https://lsa.umich.edu/chem/people/faculty/brookscl.html
Google:
"Charles L. Brooks III"
Bio:

http://brooks.chem.lsa.umich.edu/index.php?page=charles_l._brooks_iii&subdir=articles/group
http://scholar.google.com/citations?user=XWNjq2AAAAAJ&hl=en

Mean distance: 7.62
 		SNBCP
Cross-listing: MichiganTree

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Parents

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Steven A. Adelman grad student 1982 Purdue
Martin Karplus post-doc 1982-1985 Harvard

Children

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Michael J. Robertson research assistant 2010-2012 University of Michigan (Cell Biology Tree)
Brian N. Dominy grad student Scripps Institute
Teresa Head-Gordon grad student 1984-1989 Carnegie Mellon
Douglas James Tobias grad student 1991 Carnegie Mellon
John Karanicolas grad student 2003 Scripps Institute (Computational Biology Tree)
Olgun Guvench grad student 2005 Scripps Institute
Alexander Dickson post-doc University of Michigan
Aaron T. Frank post-doc University of Michigan
Jinhyuk Lee post-doc KRIBB
Eric R. May post-doc (Microtree)
Freddie R. Salsbury post-doc Scripps Institute
Sean M. Law post-doc 2011- University of Michigan
Hedieh Torabifard post-doc 2017- University of Michigan
Joan-Emma Shea post-doc 1997-2000 Scripps Research Institute
Michael Feig post-doc 1999-2003 Scripps Institute
Florence Tama post-doc 2000-2005 Scripps Research Institute (Microtree)
Jana Shen post-doc 2003-2007 Scripps Research Institute
Ilja V. Khavrutskii post-doc 2004-2007 The Scripps Research Institute, La Jolla, CA

Collaborators

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Ayyalusamy Ramamoorthy collaborator University of Michigan
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Publications

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MacKenzie DWS, Schaefer A, Steckner J, et al. (2022) A fine balance of hydrophobic-electrostatic communication pathways in a pH-switching protein. Proceedings of the National Academy of Sciences of the United States of America. 119: e2119686119
Peiffer AL, Garlick JM, Joy ST, et al. (2022) Allostery in the dynamic coactivator domain KIX occurs through minor conformational micro-states. Plos Computational Biology. 18: e1009977
Brooks CL, Case DA, Plimpton S, et al. (2021) Classical molecular dynamics. The Journal of Chemical Physics. 154: 100401
Paul TJ, Vilseck JZ, Hayes RL, et al. (2020) Exploring pH Dependent Host/Guest Binding Affinities. The Journal of Physical Chemistry. B
Ding X, Wu Y, Wang Y, et al. (2020) Accelerated CDOCKER with GPUs, parallel simulated annealing and fast Fourier transforms. Journal of Chemical Theory and Computation
Torabifard H, Panahi A, Brooks CL. (2020) M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus. Proceedings of the National Academy of Sciences of the United States of America
Gong X, Chiricotto M, Liu X, et al. (2019) Accelerating the Generalized Born with Molecular Volume and Solvent Accessible Surface Area Implicit Solvent Model Using Graphics Processing Units. Journal of Computational Chemistry
Ding X, Zou Z, Brooks CL. (2019) Deciphering protein evolution and fitness landscapes with latent space models Nature Communications. 10: 5644
Wang Y, Brooks CL. (2019) Enhanced Sampling Applied to Modeling Allosteric Regulation in Transcription. The Journal of Physical Chemistry Letters
Deng H, Ke S, Callender R, et al. (2019) Computational Studies of Catalytic Loop Dynamics in Protein Tyrosine Phosphatase Using Pathway Optimization Methods. The Journal of Physical Chemistry. B
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