Chase L. Beisel - Publications

Chemical and biomolecular engineering North Carolina State University, Raleigh, NC 
 2004-2009 Chemical Biology California Institute of Technology, Pasadena, CA 

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mougiakos I, Beisel CL. CRISPR transposons on the move. Cell Host & Microbe. 29: 675-677. PMID 33984272 DOI: 10.1016/j.chom.2021.04.012  0.01
2021 Jiao C, Sharma S, Dugar G, Peeck NL, Bischler T, Wimmer F, Yu Y, Barquist L, Schoen C, Kurzai O, Sharma CM, Beisel CL. Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9. Science (New York, N.Y.). PMID 33906967 DOI: 10.1126/science.abe7106  0.04
2021 Durmusoglu D, Al'Abri IS, Collins SP, Cheng J, Eroglu A, Beisel CL, Crook N. Biomanufacturing of Small Molecules in the Mammalian Gut by Probiotic . Acs Synthetic Biology. PMID 33843197 DOI: 10.1021/acssynbio.0c00562  0.01
2021 Collins SP, Rostain W, Liao C, Beisel CL. Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switch. Nucleic Acids Research. PMID 33619539 DOI: 10.1093/nar/gkab100  0.04
2021 Annas GJ, Beisel CL, Clement K, Crisanti A, Francis S, Galardini M, Galizi R, Grünewald J, Immobile G, Khalil AS, Müller R, Pattanayak V, Petri K, Paul L, Pinello L, et al. A Code of Ethics for Gene Drive Research. The Crispr Journal. 1-8. PMID 33571044 DOI: 10.1089/crispr.2020.0096  0.01
2021 Collias D, Beisel CL. CRISPR technologies and the search for the PAM-free nuclease. Nature Communications. 12: 555. PMID 33483498 DOI: 10.1038/s41467-020-20633-y  0.01
2020 Marshall R, Beisel CL, Noireaux V. Rapid Testing of CRISPR Nucleases and Guide RNAs in an Cell-Free Transcription-Translation System. Star Protocols. 1: 100003. PMID 33111065 DOI: 10.1016/j.xpro.2019.100003  0.01
2020 Collins SP, Beisel CL. Your Base Editor Might Be Flirting with Single (Stranded) DNA: Faithful On-Target CRISPR Base Editing without Promiscuous Deamination. Molecular Cell. 79: 703-704. PMID 32888434 DOI: 10.1016/J.Molcel.2020.07.030  0.01
2020 Collias D, Leenay RT, Slotkowski RA, Zuo Z, Collins SP, McGirr BA, Liu J, Beisel CL. A positive, growth-based PAM screen identifies noncanonical motifs recognized by the Cas9. Science Advances. 6: eabb4054. PMID 32832642 DOI: 10.1126/Sciadv.Abb4054  1
2020 Jacobsen T, Yi G, Al Asafen H, Jermusyk AA, Beisel CL, Reeves GT. Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems. Plos One. 15: e0232046. PMID 32352996 DOI: 10.1371/Journal.Pone.0232046  0.01
2020 Jacobsen T, Ttofali F, Liao C, Manchalu S, Gray BN, Beisel CL. Characterization of Cas12a nucleases reveals diverse PAM profiles between closely-related orthologs. Nucleic Acids Research. PMID 32329776 DOI: 10.1093/Nar/Gkaa272  0.04
2020 Siedler S, Rau MH, Bidstrup S, Vento JM, Aunsbjerg SD, Bosma EF, McNair LM, Beisel CL, Neves AR. Competitive exclusion is a major bioprotective mechanism of lactobacilli against fungal spoilage in fermented milk products. Applied and Environmental Microbiology. PMID 32005739 DOI: 10.1128/Aem.02312-19  0.01
2020 Beisel CL. Methods for characterizing, applying, and teaching CRISPR-Cas systems. Methods (San Diego, Calif.). PMID 31954772 DOI: 10.1016/J.Ymeth.2020.01.004  0.01
2019 Collias D, Marshall R, Collins SP, Beisel CL, Noireaux V. An educational module to explore CRISPR technologies with a cell-free transcription-translation system. Synthetic Biology (Oxford, England). 4: ysz005. PMID 32995532 DOI: 10.1093/Synbio/Ysz005  0.01
2019 Wimmer F, Beisel CL. CRISPR-Cas Systems and the Paradox of Self-Targeting Spacers. Frontiers in Microbiology. 10: 3078. PMID 32038537 DOI: 10.3389/Fmicb.2019.03078  0.01
2019 Liao C, Slotkowski RA, Beisel CL. CRATES: A one-step assembly method for Class 2 CRISPR arrays. Methods in Enzymology. 629: 493-511. PMID 31727255 DOI: 10.1016/Bs.Mie.2019.04.011  1
2019 Pickar-Oliver A, Black JB, Lewis MM, Mutchnick KJ, Klann TS, Gilcrest KA, Sitton MJ, Nelson CE, Barrera A, Bartelt LC, Reddy TE, Beisel CL, Barrangou R, Gersbach CA. Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells. Nature Biotechnology. PMID 31548729 DOI: 10.1038/S41587-019-0235-7  1
2019 Liao C, Ttofali F, Slotkowski RA, Denny SR, Cecil TD, Leenay RT, Keung AJ, Beisel CL. Modular one-pot assembly of CRISPR arrays enables library generation and reveals factors influencing crRNA biogenesis. Nature Communications. 10: 2948. PMID 31270316 DOI: 10.1038/S41467-019-10747-3  1
2019 Vento JM, Crook N, Beisel CL. Barriers to genome editing with CRISPR in bacteria. Journal of Industrial Microbiology & Biotechnology. PMID 31165970 DOI: 10.1007/S10295-019-02195-1  0.01
2019 Wandera KG, Collins SP, Wimmer F, Marshall R, Noireaux V, Beisel CL. An enhanced assay to characterize anti-CRISPR proteins using a cell-free transcription-translation system. Methods (San Diego, Calif.). PMID 31121300 DOI: 10.1016/J.Ymeth.2019.05.014  0.01
2019 Jacobsen T, Liao C, Beisel CL. The Acidaminococcus sp. Cas12a nuclease recognizes GTTV and GCTV as non-canonical PAMs. Fems Microbiology Letters. PMID 31004485 DOI: 10.1093/Femsle/Fnz085  0.01
2019 Garenne D, Beisel CL, Noireaux V. Characterization of the all-E. coli transcription-translation system myTXTL by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. PMID 30900355 DOI: 10.1002/Rcm.8438  0.01
2019 Westbrook A, Tang X, Marshall R, Maxwell CS, Chappell J, Agrawal DK, Dunlop MJ, Noireaux V, Beisel CL, Lucks J, Franco E. Distinct timescales of RNA regulators enable the construction of a genetic pulse generator. Biotechnology and Bioengineering. PMID 30636320 DOI: 10.1002/Bit.26918  0.01
2018 Beisel CL. CRISPR tool puts RNA on the record. Nature. 562: 347-349. PMID 30323226 DOI: 10.1038/D41586-018-06869-1  0.01
2018 Liao C, Slotkowski RA, Achmedov T, Beisel CL. The Francisella novicida Cas12a is sensitive to the structure downstream of the terminal repeat in CRISPR arrays. Rna Biology. PMID 30252595 DOI: 10.1080/15476286.2018.1526537  1
2018 Alper HS, Beisel CL. Advances in CRISPR Technologies for Microbial Strain Engineering. Biotechnology Journal. 13: e1800460. PMID 30175907 DOI: 10.1002/Biot.201800460  0.01
2018 Leenay RT, Vento JM, Shah M, Martino ME, Leulier F, Beisel CL. Genome editing with CRISPR-Cas9 in Lactobacillus plantarum revealed that editing outcomes can vary across strains and between methods. Biotechnology Journal. e1700583. PMID 30156038 DOI: 10.1002/Biot.201700583  1
2018 Martino ME, Joncour P, Leenay R, Gervais H, Shah M, Hughes S, Gillet B, Beisel C, Leulier F. Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis. Cell Host & Microbe. 24: 109-119.e6. PMID 30008290 DOI: 10.1016/J.Chom.2018.06.001  0.01
2018 Agrawal DK, Tang X, Westbrook A, Marshall R, Maxwell C, Lucks JB, Noireaux V, Beisel CL, Dunlop M, Franco E. Mathematical modeling of RNA-based architectures for closed loop control of gene expression. Acs Synthetic Biology. PMID 29709170 DOI: 10.1021/Acssynbio.8B00040  0.01
2018 Bober JR, Beisel CL, Nair NU. Synthetic Biology Approaches to Engineer Probiotics and Members of the Human Microbiota for Biomedical Applications. Annual Review of Biomedical Engineering. PMID 29528686 DOI: 10.1146/Annurev-Bioeng-062117-121019  0.01
2018 Dugar G, Leenay RT, Eisenbart SK, Bischler T, Aul BU, Beisel CL, Sharma CM. CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9. Molecular Cell. 69: 893-905.e7. PMID 29499139 DOI: 10.1016/J.Molcel.2018.01.032  1
2018 Maxwell CS, Jacobsen T, Marshall R, Noireaux V, Beisel CL. A detailed cell-free transcription-translation-based assay to decipher CRISPR protospacer-adjacent motifs. Methods (San Diego, Calif.). PMID 29486239 DOI: 10.1016/J.Ymeth.2018.02.016  0.01
2018 Marshall R, Maxwell CS, Collins SP, Jacobsen T, Luo ML, Begemann MB, Gray BN, January E, Singer A, He Y, Beisel CL, Noireaux V. Rapid and Scalable Characterization of CRISPR Technologies Using an E. coli Cell-Free Transcription-Translation System. Molecular Cell. 69: 146-157.e3. PMID 29304331 DOI: 10.1016/J.Molcel.2017.12.007  1
2017 Waller MC, Bober JR, Nair NU, Beisel CL. Toward a genetic tool development pipeline for host-associated bacteria. Current Opinion in Microbiology. 38: 156-164. PMID 28624690 DOI: 10.1016/J.Mib.2017.05.006  0.01
2017 Marshall R, Maxwell CS, Collins SP, Beisel CL, Noireaux V. Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems. Biotechnology and Bioengineering. PMID 28475211 DOI: 10.1002/Bit.26333  0.01
2016 Leenay RT, Beisel CL. Deciphering, communicating, and engineering the CRISPR PAM. Journal of Molecular Biology. PMID 27916599 DOI: 10.1016/J.Jmb.2016.11.024  1
2016 Luo ML, Jackson RN, Denny SR, Tokmina-Lukaszewska M, Maksimchuk KR, Lin W, Bothner B, Wiedenheft B, Beisel CL. The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers. Nucleic Acids Research. PMID 27174938 DOI: 10.1093/Nar/Gkw421  1
2016 Leenay RT, Maksimchuk KR, Slotkowski RA, Agrawal RN, Gomaa AA, Briner AE, Barrangou R, Beisel CL. Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems. Molecular Cell. PMID 27041224 DOI: 10.1016/J.Molcel.2016.02.031  1
2016 Beisel C, Blessin U, Schulze Zur Wiesch J, Wehmeyer MH, Lohse AW, Benten D, Kluwe J. Infections complicating severe alcoholic hepatitis: Enterococcus species represent the most frequently identified pathogen Scandinavian Journal of Gastroenterology. 1-7. DOI: 10.3109/00365521.2016.1157887  1
2015 Beisel CL, Afroz T. Rethinking the hierarchy of sugar utilization in bacteria. Journal of Bacteriology. PMID 26574509 DOI: 10.1128/Jb.00890-15  1
2015 Griesbeck M, Ziegler S, Laffont S, Smith N, Chauveau L, Tomezsko P, Sharei A, Kourjian G, Porichis F, Hart M, Palmer CD, Sirignano M, Beisel C, Hildebrandt H, Cénac C, et al. Sex Differences in Plasmacytoid Dendritic Cell Levels of IRF5 Drive Higher IFN-α Production in Women. Journal of Immunology (Baltimore, Md. : 1950). PMID 26519527 DOI: 10.4049/Jimmunol.1501684  1
2015 Luo ML, Leenay RT, Beisel CL. Current and future prospects for CRISPR-based tools in bacteria. Biotechnology and Bioengineering. PMID 26460902 DOI: 10.1002/Bit.25851  1
2015 Beisel C, van Lunzen J, Lohse AW, Addo MM, Altfeld M. [Sex differences in infectious diseases and their clinical consequences]. Deutsche Medizinische Wochenschrift (1946). 140: 1385-90. PMID 26360954 DOI: 10.1055/s-0041-104246  1
2015 Afroz T, Luo ML, Beisel CL. Impact of Residual Inducer on Titratable Expression Systems. Plos One. 10: e0137421. PMID 26348036 DOI: 10.1371/Journal.Pone.0137421  1
2015 Sun W, Ji W, Hall JM, Hu Q, Wang C, Beisel CL, Gu Z. Self-Assembled DNA Nanoclews for the Efficient Delivery of CRISPR-Cas9 for Genome Editing. Angewandte Chemie (International Ed. in English). PMID 26310292 DOI: 10.1002/Anie.201506030  1
2015 Arbore R, Sekii K, Beisel C, Ladurner P, Berezikov E, Schärer L. Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits. Frontiers in Zoology. 12: 14. PMID 26146508 DOI: 10.1186/s12983-015-0106-0  1
2015 Comoglio F, Schlumpf T, Schmid V, Rohs R, Beisel C, Paro R. High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins. Cell Reports. 11: 821-34. PMID 25921534 DOI: 10.1016/j.celrep.2015.03.070  1
2015 Schulze Zur Wiesch J, Beisel C. The elephant and the blind men: making sense of the seemingly multifaceted role of Blimp-1 in HIV-1 infection. Aids (London, England). 29: 134-6. PMID 25562500 DOI: 10.1097/QAD.0000000000000513  0.01
2015 Luo ML, Mullis AS, Leenay RT, Beisel CL. Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression. Nucleic Acids Research. 43: 674-81. PMID 25326321 DOI: 10.1093/Nar/Gku971  1
2015 Afroz T, Biliouris K, Boykin KE, Kaznessis Y, Beisel CL. Trade-offs in engineering sugar utilization pathways for titratable control. Acs Synthetic Biology. 4: 141-9. PMID 24735079 DOI: 10.1021/Sb400162Z  1
2015 Sun W, Ji W, Hall JM, Hu Q, Wang C, Beisel CL, Gu Z. Self-Assembled DNA Nanoclews for the Efficient Delivery of CRISPR-Cas9 for Genome Editing Angewandte Chemie - International Edition. DOI: 10.1002/anie.201506030  1
2014 Osterwalder M, Speziale D, Shoukry M, Mohan R, Ivanek R, Kohler M, Beisel C, Wen X, Scales SJ, Christoffels VM, Visel A, Lopez-Rios J, Zeller R. HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme. Developmental Cell. 31: 345-57. PMID 25453830 DOI: 10.1016/J.Devcel.2014.09.018  1
2014 Routtu J, Hall MD, Albere B, Beisel C, Bergeron RD, Chaturvedi A, Choi JH, Colbourne J, De Meester L, Stephens MT, Stelzer CP, Solorzano E, Thomas WK, Pfrender ME, Ebert D. An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits. Bmc Genomics. 15: 1033. PMID 25431334 DOI: 10.1186/1471-2164-15-1033  1
2014 Beisel CL, Gomaa AA, Barrangou R. A CRISPR design for next-generation antimicrobials. Genome Biology. 15: 516. PMID 25417800 DOI: 10.1186/S13059-014-0516-X  1
2014 Briner AE, Donohoue PD, Gomaa AA, Selle K, Slorach EM, Nye CH, Haurwitz RE, Beisel CL, May AP, Barrangou R. Guide RNA functional modules direct Cas9 activity and orthogonality. Molecular Cell. 56: 333-9. PMID 25373540 DOI: 10.1016/J.Molcel.2014.09.019  1
2014 Beisel C, Toth I, van Lunzen J, Schulze Zur Wiesch J. Reduced expression of Blimp-1 in memory B cells in patients with HIV-1 infection suggests distinct roles of this molecule for B and T cell regulation. Aids (London, England). 28: 2489-91. PMID 25265234 DOI: 10.1097/QAD.0000000000000448  1
2014 Beisel C, Weiler-Normann C, Teufel A, Lohse AW. Association of autoimmune hepatitis and systemic lupus erythematodes: a case series and review of the literature. World Journal of Gastroenterology : Wjg. 20: 12662-7. PMID 25253972 DOI: 10.3748/wjg.v20.i35.12662  1
2014 Beisel C, Heuer M, Otto B, Jochum J, Schmiedel S, Hertling S, Degen O, Lüth S, van Lunzen J, Schulze Zur Wiesch J. German cohort of HCV mono-infected and HCV/HIV co-infected patients reveals relative under-treatment of co-infected patients. Aids Research and Therapy. 11: 16. PMID 25006340 DOI: 10.1186/1742-6405-11-16  1
2014 Lopez-Rios J, Duchesne A, Speziale D, Andrey G, Peterson KA, Germann P, Unal E, Liu J, Floriot S, Barbey S, Gallard Y, Müller-Gerbl M, Courtney AD, Klopp C, Rodriguez S, ... ... Beisel C, et al. Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs. Nature. 511: 46-51. PMID 24990743 DOI: 10.1038/Nature13289  1
2014 Afroz T, Biliouris K, Kaznessis Y, Beisel CL. Bacterial sugar utilization gives rise to distinct single-cell behaviours. Molecular Microbiology. 93: 1093-103. PMID 24976172 DOI: 10.1111/Mmi.12695  1
2014 Giallonardo FD, Töpfer A, Rey M, Prabhakaran S, Duport Y, Leemann C, Schmutz S, Campbell NK, Joos B, Lecca MR, Patrignani A, Däumer M, Beisel C, Rusert P, Trkola A, et al. Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research. 42: e115. PMID 24972832 DOI: 10.1093/Nar/Gku537  1
2014 Beisel CL, Bloom RJ, Smolke CD. Construction of ligand-responsive microRNAs that operate through inhibition of Drosha processing. Methods in Molecular Biology (Clifton, N.J.). 1111: 259-67. PMID 24549626 DOI: 10.1007/978-1-62703-755-6_19  1
2014 Lundberg P, Karow A, Nienhold R, Looser R, Hao-Shen H, Nissen I, Girsberger S, Lehmann T, Passweg J, Stern M, Beisel C, Kralovics R, Skoda RC. Clonal evolution and clinical correlates of somatic mutations in myeloproliferative neoplasms. Blood. 123: 2220-8. PMID 24478400 DOI: 10.1182/blood-2013-11-537167  1
2014 Gomaa AA, Klumpe HE, Luo ML, Selle K, Barrangou R, Beisel CL. Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. Mbio. 5: e00928-13. PMID 24473129 DOI: 10.1128/Mbio.00928-13  1
2014 Afroz T, Biliouris K, Boykin KE, Kaznessis Y, Beisel CL. Engineering natural sugar utilization pathways for titratable control in metabolic engineering Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area At the 2014 Aiche Annual Meeting. 2: 761.  1
2014 Hall J, Prokup A, Deiters A, Beisel C. A high throughput screen for small molecule inhibitors of small RNA signlaing in bacteria Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area At the 2014 Aiche Annual Meeting. 2: 865.  1
2013 Tóth I, Le AQ, Hartjen P, Thomssen A, Matzat V, Lehmann C, Scheurich C, Beisel C, Busch P, Degen O, Lohse AW, Eiermann T, Fätkenheuer G, Meyer-Olson D, Bockhorn M, et al. Decreased frequency of CD73+CD8+ T cells of HIV-infected patients correlates with immune activation and T cell exhaustion. Journal of Leukocyte Biology. 94: 551-61. PMID 23709688 DOI: 10.1189/jlb.0113018  1
2013 Steffen PA, Fonseca JP, Gänger C, Dworschak E, Kockmann T, Beisel C, Ringrose L. Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin. Nucleic Acids Research. 41: 5235-50. PMID 23580551 DOI: 10.1093/nar/gkt217  1
2013 Kockmann T, Gerstung M, Schlumpf T, Xhinzhou Z, Hess D, Beerenwinkel N, Beisel C, Paro R. The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila. Genome Biology. 14: R18. PMID 23442797 DOI: 10.1186/Gb-2013-14-2-R18  1
2013 Braun A, Beisel C, Brede O, Krause F. Laser fluorescence of dentin caries covered with a novel nano-filled sealant. Lasers in Medical Science. 28: 133-8. PMID 22460738 DOI: 10.1007/s10103-012-1087-2  1
2013 Afroz T, Beisel CL. Understanding and exploiting feedback in synthetic biology Chemical Engineering Science. 103: 79-90. DOI: 10.1016/J.Ces.2013.02.017  1
2012 Zagordi O, Däumer M, Beisel C, Beerenwinkel N. Read length versus depth of coverage for viral quasispecies reconstruction. Plos One. 7: e47046. PMID 23056573 DOI: 10.1371/Journal.Pone.0047046  1
2012 Gerstung M, Beisel C, Rechsteiner M, Wild P, Schraml P, Moch H, Beerenwinkel N. Reliable detection of subclonal single-nucleotide variants in tumour cell populations. Nature Communications. 3: 811. PMID 22549840 DOI: 10.1038/Ncomms1814  1
2012 Beisel CL, Updegrove TB, Janson BJ, Storz G. Multiple factors dictate target selection by Hfq-binding small RNAs. The Embo Journal. 31: 1961-74. PMID 22388518 DOI: 10.1038/Emboj.2012.52  1
2012 Sakoparnig T, Kockmann T, Paro R, Beisel C, Beerenwinkel N. Binding profiles of chromatin-modifying proteins are predictive for transcriptional activity and promoter-proximal pausing. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 126-38. PMID 22300315 DOI: 10.1089/Cmb.2011.0258  1
2012 Tiwari VK, Stadler MB, Wirbelauer C, Paro R, Schübeler D, Beisel C. A chromatin-modifying function of JNK during stem cell differentiation. Nature Genetics. 44: 94-100. PMID 22179133 DOI: 10.1038/Ng.1036  1
2011 Bauch A, Adamczyk I, Buczek P, Elmer FJ, Enimanev K, Glyzewski P, Kohler M, Pylak T, Quandt A, Ramakrishnan C, Beisel C, Malmström L, Aebersold R, Rinn B. openBIS: a flexible framework for managing and analyzing complex data in biology research. Bmc Bioinformatics. 12: 468. PMID 22151573 DOI: 10.1186/1471-2105-12-468  1
2011 Beisel CL, Storz G. Discriminating tastes: physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression. Rna Biology. 8: 766-70. PMID 21788732 DOI: 10.4161/Rna.8.5.16024  1
2011 Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue MT, Spillane C, Nordborg M, Rehmsmeier M, Köhler C. High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm. Plos Genetics. 7: e1002126. PMID 21698132 DOI: 10.1371/Journal.Pgen.1002126  1
2011 Rokyta DR, Joyce P, Caudle SB, Miller C, Beisel CJ, Wichman HA. Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus. Plos Genetics. 7: e1002075. PMID 21655079 DOI: 10.1371/Journal.Pgen.1002075  1
2011 Strübbe G, Popp C, Schmidt A, Pauli A, Ringrose L, Beisel C, Paro R. Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners. Proceedings of the National Academy of Sciences of the United States of America. 108: 5572-7. PMID 21415365 DOI: 10.1073/pnas.1007916108  1
2011 Beisel CL, Storz G. The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Molecular Cell. 41: 286-97. PMID 21292161 DOI: 10.1016/J.Molcel.2010.12.027  1
2011 Beisel C, Paro R. Silencing chromatin: comparing modes and mechanisms. Nature Reviews. Genetics. 12: 123-35. PMID 21221116 DOI: 10.1038/nrg2932  1
2011 Enderle D, Beisel C, Stadler MB, Gerstung M, Athri P, Paro R. Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. Genome Research. 21: 216-26. PMID 21177970 DOI: 10.1101/gr.114348.110  1
2011 Beisel CL, Chen YY, Culler SJ, Hoff KG, Smolke CD. Design of small molecule-responsive microRNAs based on structural requirements for Drosha processing. Nucleic Acids Research. 39: 2981-94. PMID 21149259 DOI: 10.1093/Nar/Gkq954  1
2010 Beisel CL, Storz G. Base pairing small RNAs and their roles in global regulatory networks. Fems Microbiology Reviews. 34: 866-82. PMID 20662934 DOI: 10.1111/J.1574-6976.2010.00241.X  1
2010 Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, Schübeler D. Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nature Structural & Molecular Biology. 17: 894-900. PMID 20562853 DOI: 10.1038/nsmb.1825  1
2010 Buller F, Steiner M, Scheuermann J, Mannocci L, Nissen I, Kohler M, Beisel C, Neri D. High-throughput sequencing for the identification of binding molecules from DNA-encoded chemical libraries. Bioorganic & Medicinal Chemistry Letters. 20: 4188-92. PMID 20538458 DOI: 10.1016/j.bmcl.2010.05.053  1
2010 Brykczynska U, Hisano M, Erkek S, Ramos L, Oakeley EJ, Roloff TC, Beisel C, Schübeler D, Stadler MB, Peters AH. Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa. Nature Structural & Molecular Biology. 17: 679-87. PMID 20473313 DOI: 10.1038/nsmb.1821  1
2010 Muth D, Ghazaryan S, Eckerle I, Beckett E, Pöhler C, Batzler J, Beisel C, Gogolin S, Fischer M, Henrich KO, Ehemann V, Gillespie P, Schwab M, Westermann F. Transcriptional repression of SKP2 is impaired in MYCN-amplified neuroblastoma. Cancer Research. 70: 3791-802. PMID 20424123 DOI: 10.1158/0008-5472.CAN-09-1245  1
2010 Rüping MJ, Heinz WJ, Kindo AJ, Rickerts V, Lass-Flörl C, Beisel C, Herbrecht R, Roth Y, Silling G, Ullmann AJ, Borchert K, Egerer G, Maertens J, Maschmeyer G, Simon A, et al. Forty-one recent cases of invasive zygomycosis from a global clinical registry. The Journal of Antimicrobial Chemotherapy. 65: 296-302. PMID 20008047 DOI: 10.1093/jac/dkp430  1
2009 Beisel C, Paro R. Dissection of gene regulatory networks in embryonic stem cells by means of high-throughput sequencing. Biological Chemistry. 390: 1139-44. PMID 19642873 DOI: 10.1515/BC.2009.116  1
2009 Balwierz PJ, Carninci P, Daub CO, Kawai J, Hayashizaki Y, Van Belle W, Beisel C, van Nimwegen E. Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data. Genome Biology. 10: R79. PMID 19624849 DOI: 10.1186/Gb-2009-10-7-R79  1
2009 Beisel CL, Smolke CD. Design principles for riboswitch function. Plos Computational Biology. 5: e1000363. PMID 19381267 DOI: 10.1371/Journal.Pcbi.1000363  1
2009 Tariq M, Nussbaumer U, Chen Y, Beisel C, Paro R. Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression. Proceedings of the National Academy of Sciences of the United States of America. 106: 1157-62. PMID 19144915 DOI: 10.1073/pnas.0809669106  1
2009 Bayer TS, Hoff KG, Beisel CL, Lee JJ, Smolke CD. Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. Journal of Biological Engineering. 3: 1. PMID 19118500 DOI: 10.1186/1754-1611-3-1  1
2008 Beisel CL, Bayer TS, Hoff KG, Smolke CD. Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Molecular Systems Biology. 4: 224. PMID 18956013 DOI: 10.1038/Msb.2008.62  1
2008 Rüping MJ, Albermann N, Ebinger F, Burckhardt I, Beisel C, Müller C, Vehreschild JJ, Kochanek M, Fätkenheuer G, Bangard C, Ullmann AJ, Herr W, Kolbe K, Hallek M, Cornely OA. Posaconazole concentrations in the central nervous system. The Journal of Antimicrobial Chemotherapy. 62: 1468-70. PMID 18824458 DOI: 10.1093/jac/dkn409  1
2008 Joyce P, Rokyta DR, Beisel CJ, Orr HA. A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation. Genetics. 180: 1627-43. PMID 18791255 DOI: 10.1534/Genetics.108.088716  1
2008 Rokyta DR, Beisel CJ, Joyce P, Ferris MT, Burch CL, Wichman HA. Beneficial fitness effects are not exponential for two viruses. Journal of Molecular Evolution. 67: 368-76. PMID 18779988 DOI: 10.1007/S00239-008-9153-X  1
2008 Oxman MN, Levin MJ, Arbeit RD, Barry P, Beisel C, Boardman KD, Colling CL, Davis LE, Gelb LD, Gershon AA, Hayward AR, Irwin MR, Johnson GR, Peduzzi PN, Schmader KE, et al. Vaccination against herpes zoster and postherpetic neuralgia Journal of Infectious Diseases. 197: S228-S236. PMID 18419402 DOI: 10.1086/522159  1
2008 Levin MJ, Oxman MN, Zhang JH, Johnson GR, Stanley H, Hayward AR, Caulfield MJ, Irwin MR, Smith JG, Clair J, Chan ISF, Williams H, Harbecke R, Marchese R, Straus SE, ... ... Beisel C, et al. Varicella-zoster virus-specific immune responses in elderly recipients of a herpes zoster vaccine Journal of Infectious Diseases. 197: 825-835. PMID 18419349 DOI: 10.1086/528696  1
2008 Beisel CL, Smolke C. How to make an information processing device out of RNA Aiche Annual Meeting, Conference Proceedings 1
2008 Beisel CL, Smolke C. Ligand-responsive micrornas: Toward probing and programming cellular states Aiche Annual Meeting, Conference Proceedings 1
2007 Beisel C, Buness A, Roustan-Espinosa IM, Koch B, Schmitt S, Haas SA, Hild M, Katsuyama T, Paro R. Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins. Proceedings of the National Academy of Sciences of the United States of America. 104: 16615-20. PMID 17921257 DOI: 10.1073/pnas.0701538104  1
2007 Beisel CJ, Rokyta DR, Wichman HA, Joyce P. Testing the extreme value domain of attraction for distributions of beneficial fitness effects. Genetics. 176: 2441-9. PMID 17565958 DOI: 10.1534/Genetics.106.068585  1
2006 Beisel C. Diagnosis of cancer in children--much is different. Changes and stresses in families | Diagnose Krebs bei Kindern--Vieles wird anders. Veränderungen und Belastungen in Familien. Kinderkrankenschwester : Organ Der Sektion Kinderkrankenpflege / Deutsche Gesellschaft FüR SozialpäDiatrie Und Deutsche Gesellschaft FüR Kinderheilkunde. 25: 105-109. PMID 2006134708  1
2006 Lyko F, Beisel C, Marhold J, Paro R. Epigenetic regulation in Drosophila. Current Topics in Microbiology and Immunology. 310: 23-44. PMID 16909905 DOI: 10.1007/3-540-31181-5_3  1
2006 Rokyta DR, Beisel CJ, Joyce P. Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation. Journal of Theoretical Biology. 243: 114-20. PMID 16859714 DOI: 10.1016/J.Jtbi.2006.06.008  1
2006 Beisel C. [Diagnosis of cancer in children--much is different. Changes and stresses in families]. Kinderkrankenschwester : Organ Der Sektion Kinderkrankenpflege / Deutsche Gesellschaft FüR SozialpäDiatrie Und Deutsche Gesellschaft FüR Kinderheilkunde. 25: 105-9. PMID 16555667  0.01
2005 Oxman MN, Levin MJ, Johnson GR, Schmader KE, Straus SE, Gelb LD, Arbeit RD, Simberkoff MS, Gershon AA, Davis LE, Weinberg A, Boardman KD, Williams HM, Zhang JH, Peduzzi PN, ... Beisel CE, et al. A vaccine to prevent herpes zoster and postherpetic neuralgia in older adults. The New England Journal of Medicine. 352: 2271-84. PMID 15930418 DOI: 10.1056/Nejmoa051016  1
2005 Beisel CL, Dowd MK, Reilly PJ. Conformational analysis of gossypol and its derivatives by molecular mechanics Journal of Molecular Structure: Theochem. 730: 51-58. DOI: 10.1016/J.Theochem.2005.05.010  1
2004 Beisel CE, Morens DM. Variant Creutzfeldt-Jakob disease and the acquired and transmissible spongiform encephalopathies. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 38: 697-704. PMID 14986255 DOI: 10.1086/381028  1
2002 Beisel C, Imhof A, Greene J, Kremmer E, Sauer F. Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1. Nature. 419: 857-62. PMID 12397363 DOI: 10.1038/Nature01126  1
2002 Belz T, Pham AD, Beisel C, Anders N, Bogin J, Kwozynski S, Sauer F. In vitro assays to study protein ubiquitination in transcription. Methods (San Diego, Calif.). 26: 233-44. PMID 12054879 DOI: 10.1016/S1046-2023(02)00027-0  1
2002 Judice TN, Nelson NC, Beisel CL, Delimont DC, Fritzsch B, Beisel KW. Cochlear whole mount in situ hybridization: identification of longitudinal and radial gradients. Brain Research. Brain Research Protocols. 9: 65-76. PMID 11852272 DOI: 10.1016/S1385-299X(01)00138-6  1
1999 Laufen T, Mayer MP, Beisel C, Klostermeier D, Mogk A, Reinstein J, Bukau B. Mechanism of regulation of hsp70 chaperones by DnaJ cochaperones. Proceedings of the National Academy of Sciences of the United States of America. 96: 5452-7. PMID 10318904 DOI: 10.1073/Pnas.96.10.5452  1
1997 Gamberi C, Izaurralde E, Beisel C, Mattaj IW. Interaction between the human nuclear cap-binding protein complex and hnRNP F. Molecular and Cellular Biology. 17: 2587-97. PMID 9111328 DOI: 10.1128/Mcb.17.5.2587  1
1997 Izaurralde E, Jarmolowski A, Beisel C, Mattaj IW, Dreyfuss G, Fischer U. A role for the M9 transport signal of hnRNP A1 in mRNA nuclear export. The Journal of Cell Biology. 137: 27-35. PMID 9105034 DOI: 10.1083/Jcb.137.1.27  1
1996 Kreuzer J, Denger S, Reifers F, Beisel C, Haack K, Gebert J, Kübler W. Adenovirus-assisted lipofection: efficient in vitro gene transfer of luciferase and cytosine deaminase to human smooth muscle cells. Atherosclerosis. 124: 49-60. PMID 8800493 DOI: 10.1016/0021-9150(96)05816-9  1
1993 Beisel CE, Edwards JF, Dunn LL, Rice NR. Analysis of multiple mRNAs from pathogenic equine infectious anemia virus (EIAV) in an acutely infected horse reveals a novel protein, Ttm, derived from the carboxy terminus of the EIAV transmembrane protein. Journal of Virology. 67: 832-42. PMID 8419648  1
1992 Lana DP, Beisel CE, Silva RF. Genetic mechanisms of antigenic variation in infectious bursal disease virus: analysis of a naturally occurring variant virus. Virus Genes. 6: 247-59. PMID 1329340 DOI: 10.1007/BF01702563  1
1990 Maes RK, Beisel CE, Spatz SJ, Thacker BJ. Polymerase chain reaction amplification of pseudorabies virus DNA from acutely and latently infected cells. Veterinary Microbiology. 24: 281-95. PMID 2175526 DOI: 10.1016/0378-1135(90)90178-X  1
1990 Dhawale S, Beisel CE, Nazerian K. Transient expression assay for qualitative assessment of gene expression by fowlpox virus. Virus Genes. 3: 213-20. PMID 2161157 DOI: 10.1007/BF00393181  1
1985 Beisel C, Tanner J, Matsuo T, Thorley-Lawson D, Kezdy F, Kieff E. Two major outer envelope glycoproteins of Epstein-Barr virus are encoded by the same gene. Journal of Virology. 54: 665-74. PMID 2987520 DOI: 10.1128/Jvi.54.3.665-674.1985  1
1984 Wooden GR, Crane CS, Beisel CG. An investigation of the effect of hesperidin complex and lemon bioflavonoid complex on growth and development of thoroughbred horses. Journal of Animal Science. 59: 1529-35. PMID 6526758  1
1982 Kieff E, Dambaugh T, Heller M, King W, Cheung A, van Santen V, Hummel M, Beisel C, Fennewald S, Hennessy K, Heineman T. The biology and chemistry of Epstein-Barr virus. The Journal of Infectious Diseases. 146: 506-17. PMID 6288806 DOI: 10.1093/Infdis/146.4.506  1
1980 Dambaugh T, Raab-Traub N, Heller M, Beisel C, Hummel M, Cheung A, Fennewald S, King W, Kieff E. Variations among isolates of Epstein-Barr virus. Annals of the New York Academy of Sciences. 354: 309-25. PMID 6261649 DOI: 10.1111/J.1749-6632.1980.Tb27974.X  1
1980 Dambaugh T, Beisel C, Hummel M, King W, Fennewald S, Cheung A, Heller M, Raab-Traub N, Kieff E. Epstein-Barr virus (B95-8) DNA VII: molecular cloning and detailed mapping. Proceedings of the National Academy of Sciences of the United States of America. 77: 2999-3003. PMID 6248879 DOI: 10.1073/Pnas.77.5.2999  1
1950 VAUGHN RH, OSBORNE JT, WEDDING GT, TABACHNICK J, BEISEL CG, BRAXTON T. The utilization of citrate by Escherichia coli. Journal of Bacteriology. 60: 119-27. PMID 14774362  1
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