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Elisa Franco, Ph.D. - Publications

Institution:
California Institute of Technology, Pasadena, CA
Area:
biomolecular computation
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sorrentino D, Ranallo S, Ricci F, Franco E. Developmental assembly of multi-component polymer systems through interconnected synthetic gene networks in vitro. Nature Communications. 15: 8561. PMID 39362892 DOI: 10.1038/s41467-024-52986-z  0.325
2024 Sorrentino D, Ranallo S, Nakamura E, Franco E, Ricci F. Synthetic Genes For Dynamic Regulation Of DNA-Based Receptors. Angewandte Chemie (International Ed. in English). e202319382. PMID 38457363 DOI: 10.1002/anie.202319382  0.301
2022 Le J, Osmanovic D, Klocke MA, Franco E. Fueling DNA Self-Assembly via Gel-Released Regulators. Acs Nano. PMID 36239698 DOI: 10.1021/acsnano.2c05595  0.308
2022 Liu AP, Appel EA, Ashby PD, Baker BM, Franco E, Gu L, Haynes K, Joshi NS, Kloxin AM, Kouwer PHJ, Mittal J, Morsut L, Noireaux V, Parekh S, Schulman R, et al. The living interface between synthetic biology and biomaterial design. Nature Materials. 21: 390-397. PMID 35361951 DOI: 10.1038/s41563-022-01231-3  0.465
2021 Agarwal S, Klocke MA, Pungchai PE, Franco E. Dynamic self-assembly of compartmentalized DNA nanotubes. Nature Communications. 12: 3557. PMID 34117248 DOI: 10.1038/s41467-021-23850-1  0.317
2020 Kim J, Franco E. RNA nanotechnology in synthetic biology. Current Opinion in Biotechnology. 63: 135-141. PMID 32035339 DOI: 10.1016/J.Copbio.2019.12.016  0.48
2020 Pacella MS, Mardanlou V, Agarwal S, Patel A, Jelezniakov E, Mohammed AM, Franco E, Schulman R. Characterizing the length-dependence of DNA nanotube end-to-end joining rates Molecular Systems Design & Engineering. 5: 544-558. DOI: 10.1039/c9me00068b  0.51
2019 Jeong D, Klocke M, Agarwal S, Kim J, Choi S, Franco E, Kim J. Cell-Free Synthetic Biology Platform for Engineering Synthetic Biological Circuits and Systems. Methods and Protocols. 2. PMID 31164618 DOI: 10.3390/mps2020039  0.448
2019 Agarwal S, Franco E. Enzyme-Driven Assembly and Disassembly of Hybrid DNA-RNA Nanotubes. Journal of the American Chemical Society. PMID 31042366 DOI: 10.1021/Jacs.9B01550  0.441
2019 Green LN, Subramanian HKK, Mardanlou V, Kim J, Hariadi RF, Franco E. Autonomous dynamic control of DNA nanostructure self-assembly. Nature Chemistry. PMID 31011170 DOI: 10.1038/S41557-019-0251-8  0.73
2019 Stewart JM, Geary C, Franco E. Design and Characterization of RNA Nanotubes. Acs Nano. PMID 31007017 DOI: 10.1021/Acsnano.8B09421  0.355
2019 Westbrook A, Tang X, Marshall R, Maxwell CS, Chappell J, Agrawal DK, Dunlop MJ, Noireaux V, Beisel CL, Lucks J, Franco E. Distinct timescales of RNA regulators enable the construction of a genetic pulse generator. Biotechnology and Bioengineering. PMID 30636320 DOI: 10.1002/Bit.26918  0.369
2018 Klocke MA, Garamella J, Subramanian HKK, Noireaux V, Franco E. Engineering DNA nanotubes for resilience in an TXTL system. Synthetic Biology (Oxford, England). 3: ysy001. PMID 32995510 DOI: 10.1093/Synbio/Ysy001  0.373
2018 Schaffter SW, Green LN, Schneider J, Subramanian HKK, Schulman R, Franco E. T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures. Nucleic Acids Research. PMID 29718412 DOI: 10.1093/Nar/Gky283  0.597
2018 Agrawal DK, Tang X, Westbrook A, Marshall R, Maxwell C, Lucks JB, Noireaux V, Beisel CL, Dunlop M, Franco E. Mathematical modeling of RNA-based architectures for closed loop control of gene expression. Acs Synthetic Biology. PMID 29709170 DOI: 10.1021/Acssynbio.8B00040  0.357
2018 Blanchini F, Cuba Samaniego C, Franco E, Giordano G. Homogeneous time constants promote oscillations in negative feedback loops. Acs Synthetic Biology. PMID 29676894 DOI: 10.1021/Acssynbio.7B00442  0.334
2018 Blanchini F, Samaniego CC, Franco E, Giordano G. Aggregates of Monotonic Step Response Systems: A Structural Classification Ieee Transactions On Control of Network Systems. 5: 782-792. DOI: 10.1109/Tcns.2017.2746343  0.345
2017 Cuba Samaniego C, Franco E. A Robust Molecular Network Motif for Period-Doubling Devices. Acs Synthetic Biology. PMID 29227103 DOI: 10.1021/Acssynbio.7B00222  0.369
2017 Green LN, Amodio A, Subramanian HKK, Ricci F, Franco E. pH-Driven Reversible Self-Assembly of Micron-Scale DNA Scaffolds. Nano Letters. 17: 7283-7288. PMID 29182337 DOI: 10.1021/Acs.Nanolett.7B02787  0.392
2017 Lloyd J, Tran CH, Wadhwani K, Cuba Samaniego C, Subramanian HKK, Franco E. Dynamic control of aptamer-ligand activity using strand displacement reactions. Acs Synthetic Biology. PMID 29028334 DOI: 10.1021/Acssynbio.7B00277  0.349
2017 Stewart JM, Subramanian HK, Franco E. Self-assembly of multi-stranded RNA motifs into lattices and tubular structures. Nucleic Acids Research. PMID 28204562 DOI: 10.1093/Nar/Gkx063  0.398
2017 Cuba Samaniego C, Giordano G, Blanchini F, Franco E. Stability analysis of an artificial biomolecular oscillator with non-cooperative regulatory interactions. Journal of Biological Dynamics. 11: 102-120. PMID 27830588 DOI: 10.1080/17513758.2016.1245790  0.401
2017 Cuba Samaniego C, Franco E. An ultrasensitive biomolecular network for robust feedback control Ifac-Papersonline. 50: 10950-10956. DOI: 10.1016/J.Ifacol.2017.08.2466  0.321
2017 Mardanlou V, Yaghoubi KC, Green LN, Subramanian HKK, Hariadi RF, Kim J, Franco E. A coarse-grained model captures the temporal evolution of DNA nanotube length distributions Natural Computing. 17: 183-199. DOI: 10.1007/S11047-017-9657-7  0.684
2016 Stewart JM, Viard M, Subramanian HK, Roark BK, Afonin KA, Franco E. Programmable RNA microstructures for coordinated delivery of siRNAs. Nanoscale. PMID 27714127 DOI: 10.1039/C6Nr05085A  0.371
2016 Amodio A, Adedeji AF, Castronovo M, Franco E, Ricci F. pH-controlled assembly of DNA tiles. Journal of the American Chemical Society. PMID 27631465 DOI: 10.1021/Jacs.6B07676  0.417
2016 Cuba Samaniego C, Giordano G, Kim J, Blanchini F, Franco E. Molecular titration promotes oscillations and bistability in minimal network models with monomeric regulators. Acs Synthetic Biology. PMID 26797494 DOI: 10.1021/Acssynbio.5B00176  0.512
2016 Schwarz-Schilling M, Kim J, Cuba C, Weitz M, Franco E, Simmel FC. Building a Synthetic Transcriptional Oscillator. Methods in Molecular Biology (Clifton, N.J.). 1342: 185-99. PMID 26254924 DOI: 10.1007/978-1-4939-2957-3_10  0.54
2016 Schwarz-Schilling M, Kim J, Cuba C, Weitz M, Franco E, Simmel FC. Building a synthetic transcriptional oscillat Methods in Molecular Biology. 1342: 185-199. DOI: 10.1007/978-1-4939-2957-3_10  0.355
2015 Giordano G, Cuba Samaniego C, Franco E, Blanchini F. Computing the structural influence matrix for biological systems. Journal of Mathematical Biology. PMID 26395779 DOI: 10.1007/S00285-015-0933-9  0.301
2015 Agrawal DK, Franco E, Schulman R. A self-regulating biomolecular comparator for processing oscillatory signals. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 26378119 DOI: 10.1098/Rsif.2015.0586  0.58
2015 Siegal-Gaskins D, Franco E, Zhou T, Murray RM. An analytical approach to bistable biological circuit discrimination using real algebraic geometry. Journal of the Royal Society, Interface / the Royal Society. 12: 20150288. PMID 26109633 DOI: 10.1098/Rsif.2015.0288  0.494
2015 Green LN, Subramanian HK, Mardanlou V, Kim J, Hariadi RF, Franco E. 72 Dynamic self-assembly of DNA nanotubes. Journal of Biomolecular Structure & Dynamics. 33: 46-7. PMID 26103283 DOI: 10.1080/07391102.2015.1032689  0.706
2015 Franco E, Galloway KE. Feedback loops in biological networks. Methods in Molecular Biology (Clifton, N.J.). 1244: 193-214. PMID 25487099 DOI: 10.1007/978-1-4939-1878-2_10  0.375
2015 Agrawal DK, Franco E, Schulman R. Designing a self-regulating biomolecular comparator Proceedings of the American Control Conference. 2015: 2661-2666. DOI: 10.1109/ACC.2015.7171136  0.483
2014 Blanchini F, Franco E, Giordano G. A structural classification of candidate oscillatory and multistationary biochemical systems. Bulletin of Mathematical Biology. 76: 2542-69. PMID 25230803 DOI: 10.1007/S11538-014-0023-Y  0.347
2014 Franco E, Giordano G, Forsberg PO, Murray RM. Negative autoregulation matches production and demand in synthetic transcriptional networks. Acs Synthetic Biology. 3: 589-99. PMID 24697805 DOI: 10.1021/Sb400157Z  0.533
2014 Weitz M, Kim J, Kapsner K, Winfree E, Franco E, Simmel FC. Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator Nature Chemistry. 6: 295-302. PMID 24651195 DOI: 10.1038/Nchem.1923  0.652
2013 Galloway KE, Franco E, Smolke CD. Dynamically reshaping signaling networks to program cell fate via genetic controllers. Science (New York, N.Y.). 341: 1235005. PMID 23950497 DOI: 10.1126/Science.1235005  0.327
2013 Franco E, Blanchini F. Structural properties of the MAPK pathway topologies in PC12 cells. Journal of Mathematical Biology. 67: 1633-68. PMID 23096491 DOI: 10.1007/S00285-012-0606-X  0.311
2013 Giordano G, Franco E, Murray RM. Feedback architectures to regulate flux of components in artificial gene networks Proceedings of the American Control Conference. 4747-4752.  0.409
2011 Franco E, Friedrichs E, Kim J, Jungmann R, Murray R, Winfree E, Simmel FC. Timing molecular motion and production with a synthetic transcriptional clock Proceedings of the National Academy of Sciences of the United States of America. 108: E784-E793. PMID 21921236 DOI: 10.1073/Pnas.1100060108  0.707
2011 Blanchini F, Franco E. Structurally robust biological networks. Bmc Systems Biology. 5: 74. PMID 21586168 DOI: 10.1186/1752-0509-5-74  0.305
2010 Sturk C, Franco E, Murray RM. Tuning a synthetic in vitro oscillator using control-theoretic tools Proceedings of the Ieee Conference On Decision and Control. 2554-2559. DOI: 10.1109/CDC.2010.5718111  0.406
2010 Friedrichs E, Kim J, Jungmann R, Franco E, Murray R, Winfree E, Simmel FC. Driving DNA Tweezers with an in vitro Transcriptional Oscillator Biophysical Journal. 98: 430a-431a. DOI: 10.1016/J.Bpj.2009.12.2334  0.716
2009 Franco E, Del Vecchio D, Murray RM. Design of insulating devices for in vitro synthetic circuits Proceedings of the Ieee Conference On Decision and Control. 4584-4589. DOI: 10.1109/CDC.2009.5400523  0.584
2008 Franco E, Murray RM. Design and performance of in vitro transcription rate regulatory circuits Proceedings of the Ieee Conference On Decision and Control. 161-166. DOI: 10.1109/CDC.2008.4739253  0.414
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