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Lucas G. Nivon, Ph.D. - Publications

Affiliations: 
2008 Harvard University, Cambridge, MA, United States 
 2008-2014 University of Washington, Seattle, Seattle, WA 
 2014- Cyrus Biotechnology 
Area:
Protein design, modeling, RNA modeling, single-molecule biophysics
Website:
cyrusbio.com
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Raghavan R, Friedrich MJ, King I, Chau-Duy-Tam Vo S, Strebinger D, Lash B, Kilian M, Platten M, Macrae RK, Song Y, Nivon L, Zhang F. Rational engineering of minimally immunogenic nucleases for gene therapy. Nature Communications. 16: 105. PMID 39747875 DOI: 10.1038/s41467-024-55522-1  0.405
2024 Ahdritz G, Bouatta N, Floristean C, Kadyan S, Xia Q, Gerecke W, O'Donnell TJ, Berenberg D, Fisk I, Zanichelli N, Zhang B, Nowaczynski A, Wang B, Stepniewska-Dziubinska MM, Zhang S, ... ... Nivon L, et al. OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature Methods. PMID 38744917 DOI: 10.1038/s41592-024-02272-z  0.548
2018 Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. De novo design of a non-local β-sheet protein with high stability and accuracy. Nature Structural & Molecular Biology. PMID 30374087 DOI: 10.1038/s41594-018-0141-6  0.611
2018 Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. De novo design of a non-local beta-sheet protein with high stability and accuracy Nature Structural & Molecular Biology. 25: 1028-1034. DOI: 10.2210/Pdb6E5C/Pdb  0.613
2014 Pulavarti SV, Nivon L, Maglaqui M, Janjua H, Mao L, Xiao R, Kornhaber G, Baker D, Montelione G, Szyperski T. Solution NMR Structure of De novo designed Protein, Northeast Structural Genomics Consortium (NESG) Target OR457 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25061  0.456
2013 Nivón LG, Moretti R, Baker D. A Pareto-optimal refinement method for protein design scaffolds. Plos One. 8: e59004. PMID 23565140 DOI: 10.1371/Journal.Pone.0059004  0.473
2011 Nivón LG, Shakhnovich EI. Thermodynamics and kinetics of the hairpin ribozyme from atomistic folding/unfolding simulations. Journal of Molecular Biology. 411: 1128-44. PMID 21740912 DOI: 10.1016/J.Jmb.2011.06.042  0.592
2006 Bokinsky G, Nivón LG, Liu S, Chai G, Hong M, Weeks KM, Zhuang X. Two distinct binding modes of a protein cofactor with its target RNA. Journal of Molecular Biology. 361: 771-84. PMID 16872630 DOI: 10.1016/J.Jmb.2006.06.048  0.575
2005 Lysek DA, Schorn C, Nivon LG, Esteve-Moya V, Christen B, Calzolai L, von Schroetter C, Fiorito F, Herrmann T, Güntert P, Wüthrich K. Prion protein NMR structures of cats, dogs, pigs, and sheep. Proceedings of the National Academy of Sciences of the United States of America. 102: 640-5. PMID 15647367 DOI: 10.1073/Pnas.0408937102  0.358
2004 Nivón LG, Shakhnovich EI. All-atom Monte Carlo simulation of GCAA RNA folding. Journal of Molecular Biology. 344: 29-45. PMID 15504400 DOI: 10.1016/J.Jmb.2004.09.041  0.578
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