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Edo L. Kussell, Ph.D. - Publications

Affiliations: 
2002 Harvard University, Cambridge, MA, United States 
Area:
Protein Folding and Design, Molecular Evolution, Drug Discovery

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Nozoe T, Kussell E, Wakamoto Y. Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data. Plos Genetics. 13: e1006653. PMID 28267748 DOI: 10.1371/Journal.Pgen.1006653  0.346
2016 Lin M, Kussell E. Correlated Mutations and Homologous Recombination Within Bacterial Populations. Genetics. PMID 28007887 DOI: 10.1534/Genetics.116.189621  0.352
2016 Skanata A, Kussell E. Evolutionary Phase Transitions in Random Environments. Physical Review Letters. 117: 38104-38104. PMID 27472146 DOI: 10.1103/Physrevlett.117.038104  0.303
2016 Lin WH, Kussell E. Complex Interplay of Physiology and Selection in the Emergence of Antibiotic Resistance. Current Biology : Cb. PMID 27212408 DOI: 10.1016/J.Cub.2016.04.015  0.306
2016 Hashimoto M, Nozoe T, Nakaoka H, Okura R, Akiyoshi S, Kaneko K, Kussell E, Wakamoto Y. Noise-driven growth rate gain in clonal cellular populations. Proceedings of the National Academy of Sciences of the United States of America. 113: 3251-6. PMID 26951676 DOI: 10.1073/Pnas.1519412113  0.325
2015 Lambert G, Kussell E. Quantifying selective pressures driving bacterial evolution using lineage analysis. Physical Review. X. 5. PMID 26213639 DOI: 10.1103/Physrevx.5.011016  0.312
2015 Lin WH, Rocco MJ, Bertozzi-Villa A, Kussell E. Populations adapt to fluctuating selection using derived and ancestral allelic diversity. Evolution; International Journal of Organic Evolution. 69: 1448-60. PMID 25908222 DOI: 10.1111/Evo.12665  0.32
2014 Kussell E, Vucelja M. Non-equilibrium physics and evolution—adaptation, extinction, and ecology: a Key Issues review Reports On Progress in Physics. 77: 102602-102602. PMID 25303141 DOI: 10.1088/0034-4885/77/10/102602  0.312
2013 Kussell E. Evolution in Microbes Annual Review of Biophysics. 42: 493-514. PMID 23654305 DOI: 10.1146/Annurev-Biophys-083012-130320  0.336
2012 Wakamoto Y, Grosberg AY, Kussell E. Optimal lineage principle for age-structured populations Evolution. 66: 115-134. PMID 22220869 DOI: 10.1111/J.1558-5646.2011.01418.X  0.521
2012 Lin WH, Kussell E. Evolutionary pressures on simple sequence repeats in prokaryotic coding regions Nucleic Acids Research. 40: 2399-2413. PMID 22123746 DOI: 10.1093/Nar/Gkr1078  0.315
2010 Leibler S, Kussell E. Individual histories and selection in heterogeneous populations. Proceedings of the National Academy of Sciences of the United States of America. 107: 13183-8. PMID 20616073 DOI: 10.1073/Pnas.0912538107  0.332
2006 Kussell E, Leibler S, Grosberg A. Polymer-population mapping and localization in the space of phenotypes. Physical Review Letters. 97: 068101. PMID 17026205 DOI: 10.1103/Physrevlett.97.068101  0.529
2005 Kussell E. The Designability Hypothesis and Protein Evolution Protein and Peptide Letters. 12: 111-116. PMID 15723636 DOI: 10.2174/0929866053005881  0.39
2005 Kussell E, Kishony R, Balaban NQ, Leibler S. Bacterial persistence: a model of survival in changing environments. Genetics. 169: 1807-14. PMID 15687275 DOI: 10.1534/Genetics.104.035352  0.313
2003 Kussell E, Shimada J, Shakhnovich EI. Side-chain dynamics and protein folding. Proteins. 52: 303-21. PMID 12833553 DOI: 10.1002/Prot.10426  0.656
2002 Kussell E, Shakhnovich EI. Glassy dynamics of side-chain ordering in a simple model of protein folding. Physical Review Letters. 89: 168101. PMID 12398757 DOI: 10.1103/Physrevlett.89.168101  0.559
2002 Kussell E, Shimada J, Shakhnovich EI. A structure-based method for derivation of all-atom potentials for protein folding. Proceedings of the National Academy of Sciences of the United States of America. 99: 5343-8. PMID 11943859 DOI: 10.1073/Pnas.072665799  0.636
2001 Kussell E, Shimada J, Shakhnovich EI. Excluded volume in protein side-chain packing. Journal of Molecular Biology. 311: 183-93. PMID 11469867 DOI: 10.1006/Jmbi.2001.4846  0.638
2001 Shimada J, Kussell EL, Shakhnovich EI. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation. Journal of Molecular Biology. 308: 79-95. PMID 11302709 DOI: 10.1006/Jmbi.2001.4586  0.663
2000 Shakhnovich E, Kussell E, Shimada J. Folding thermodynamics and kinetics in all-atom simulations Journal of Molecular Graphics and Modelling. 18: 555. DOI: 10.1016/S1093-3263(00)80130-8  0.614
1999 Kussell EL, Shakhnovich EI. Analytical Approach to the Protein Design Problem Physical Review Letters. 83: 4437-4440. DOI: 10.1103/Physrevlett.83.4437  0.487
1997 Vendruscolo M, Kussell E, Domany E. Recovery of protein structure from contact maps. Folding & Design. 2: 295-306. PMID 9377713 DOI: 10.1016/S1359-0278(97)00041-2  0.337
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