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Vebjorn Ljosa, Ph.D. - Publications

Affiliations: 
2007 Computer Science University of California, Santa Barbara, Santa Barbara, CA, United States 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Bray MA, Gustafsdottir SM, Ljosa V, Singh S, Sokolnicki KL, Bittker JA, Bodycombe NE, Dancík V, Hasaka TP, Hon CS, Kemp MM, Li K, Walpita D, Wawer MJ, Golub TR, et al. A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay. Gigascience. PMID 28327978 DOI: 10.1093/Gigascience/Giw014  0.444
2016 Dao D, Fraser AN, Hung J, Ljosa V, Singh S, Carpenter AE. CellProfiler Analyst: interactive data exploration, analysis, and classification of large biological image sets. Bioinformatics (Oxford, England). PMID 27354701 DOI: 10.1093/Bioinformatics/Btw390  0.413
2015 Singh S, Wu X, Ljosa V, Bray MA, Piccioni F, Root DE, Doench JG, Boehm JS, Carpenter AE. Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects. Plos One. 10: e0131370. PMID 26197079 DOI: 10.1371/Journal.Pone.0131370  0.316
2014 Wawer MJ, Li K, Gustafsdottir SM, Ljosa V, Bodycombe NE, Marton MA, Sokolnicki KL, Bray MA, Kemp MM, Winchester E, Taylor B, Grant GB, Hon CS, Duvall JR, Wilson JA, et al. Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling. Proceedings of the National Academy of Sciences of the United States of America. 111: 10911-6. PMID 25024206 DOI: 10.1073/Pnas.1410933111  0.34
2013 Gustafsdottir SM, Ljosa V, Sokolnicki KL, Anthony Wilson J, Walpita D, Kemp MM, Petri Seiler K, Carrel HA, Golub TR, Schreiber SL, Clemons PA, Carpenter AE, Shamji AF. Multiplex cytological profiling assay to measure diverse cellular states. Plos One. 8: e80999. PMID 24312513 DOI: 10.1371/Journal.Pone.0080999  0.335
2013 Ljosa V, Caie PD, Ter Horst R, Sokolnicki KL, Jenkins EL, Daya S, Roberts ME, Jones TR, Singh S, Genovesio A, Clemons PA, Carragher NO, Carpenter AE. Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment. Journal of Biomolecular Screening. 18: 1321-9. PMID 24045582 DOI: 10.1177/1087057113503553  0.389
2013 Ljosa V, Sokolnicki KL, Carpenter AE. Erratum: Corrigendum: Annotated high-throughput microscopy image sets for validation Nature Methods. 10: 445-445. DOI: 10.1038/Nmeth0513-445D  0.318
2012 Ljosa V, Sokolnicki KL, Carpenter AE. Annotated high-throughput microscopy image sets for validation. Nature Methods. 9: 637. PMID 22743765 DOI: 10.1038/Nmeth.2083  0.45
2012 Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE. An image analysis toolbox for high-throughput C. elegans assays. Nature Methods. 9: 714-6. PMID 22522656 DOI: 10.1038/Nmeth.1984  0.466
2011 Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE. Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics (Oxford, England). 27: 1179-80. PMID 21349861 DOI: 10.1093/Bioinformatics/Btr095  0.311
2009 Ljosa V, Carpenter AE. Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening. Plos Computational Biology. 5: e1000603. PMID 20041172 DOI: 10.1371/Journal.Pcbi.1000603  0.469
2008 Ljosa V, Singh AK. Top-k spatial joins of probabilistic objects Proceedings - International Conference On Data Engineering. 566-575. DOI: 10.1109/ICDE.2008.4497465  0.529
2007 Ljosa V, Singh AK. APLA: Indexing arbitrary probability distributions Proceedings - International Conference On Data Engineering. 946-955. DOI: 10.1109/ICDE.2007.367940  0.52
2006 Ljosa V, Singh AK. Probabilistic segmentation and analysis of horizontal cells Proceedings - Ieee International Conference On Data Mining, Icdm. 980-985. DOI: 10.1109/ICDM.2006.129  0.55
2006 Ljosa V, Bhattacharya A, Singh AK. LB-Index: A multi-resolution index structure for images Proceedings - International Conference On Data Engineering. 2006: 144. DOI: 10.1109/ICDE.2006.85  0.546
2006 Ljosa V, Bhattacharya A, Singh AK. Indexing spatially sensitive distance measures using multi-resolution lower bounds Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3896: 865-883. DOI: 10.1007/11687238_51  0.555
2005 Bhattacharya A, Ljosa V, Pan JY, Verardo MR, Yang H, Faloutsos C, Singh AK. ViVo: Visual vocabulary construction for mining biomedical images Proceedings - Ieee International Conference On Data Mining, Icdm. 50-57. DOI: 10.1109/ICDM.2005.151  0.522
2005 Singh AK, Bhattacharya A, Ljosa V. Current challenges in bioimage database design 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 375-379. DOI: 10.1109/CSBW.2005.47  0.562
2004 Kahveci T, Ljosa V, Singh AK. Speeding up whole-genome alignment by indexing frequency vectors. Bioinformatics (Oxford, England). 20: 2122-34. PMID 15073002 DOI: 10.1093/Bioinformatics/Bth212  0.517
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