Victoria J. Orphan, Ph.D. - Publications

2001 University of California, Santa Barbara, Santa Barbara, CA, United States 
Microbiology Biology, Molecular Biology, Biogeochemistry

126 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Osorio-Rodriguez D, Metcalfe KS, McGlynn SE, Yu H, Dekas AE, Ellisman M, Deerinck T, Aristilde L, Grotzinger JP, Orphan VJ. Microbially induced precipitation of silica by anaerobic methane-oxidizing consortia and implications for microbial fossil preservation. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302156120. PMID 38079551 DOI: 10.1073/pnas.2302156120  0.328
2023 Murali R, Yu H, Speth DR, Wu F, Metcalfe KS, Crémière A, Laso-Pèrez R, Malmstrom RR, Goudeau D, Woyke T, Hatzenpichler R, Chadwick GL, Connon SA, Orphan VJ. Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea. Plos Biology. 21: e3002292. PMID 37747940 DOI: 10.1371/journal.pbio.3002292  0.722
2023 Laso-Pérez R, Wu F, Crémière A, Speth DR, Magyar JS, Zhao K, Krupovic M, Orphan VJ. Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome. Nature Microbiology. PMID 36658397 DOI: 10.1038/s41564-022-01297-4  0.334
2022 Wegener G, Laso-Pérez R, Orphan VJ, Boetius A. Anaerobic Degradation of Alkanes by Marine Archaea. Annual Review of Microbiology. PMID 35917471 DOI: 10.1146/annurev-micro-111021-045911  0.342
2022 Aronson HS, Monteverde DR, Barnes BD, Johnson BR, Zawaski MJ, Speth DR, Wang XT, Wu F, Webb SM, Trower EJ, Magyar JS, Sessions AL, Orphan VJ, Fischer WW. Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA. Geobiology. PMID 35894090 DOI: 10.1111/gbi.12512  0.379
2022 Yu H, Speth DR, Connon SA, Goudeau D, Malmstrom RR, Woyke T, Orphan VJ. Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep. Applied and Environmental Microbiology. e0210921. PMID 35604226 DOI: 10.1128/aem.02109-21  0.402
2022 Speth DR, Yu FB, Connon SA, Lim S, Magyar JS, Peña-Salinas ME, Quake SR, Orphan VJ. Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily. The Isme Journal. PMID 35352015 DOI: 10.1038/s41396-022-01222-x  0.361
2022 Chadwick GL, Skennerton CT, Laso-Pérez R, Leu AO, Speth DR, Yu H, Morgan-Lang C, Hatzenpichler R, Goudeau D, Malmstrom R, Brazelton WJ, Woyke T, Hallam SJ, Tyson GW, Wegener G, ... ... Orphan VJ, et al. Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea. Plos Biology. 20: e3001508. PMID 34986141 DOI: 10.1371/journal.pbio.3001508  0.758
2021 Yu H, Skennerton CT, Chadwick GL, Leu AO, Aoki M, Tyson GW, Orphan VJ. Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea. The Isme Journal. PMID 34285362 DOI: 10.1038/s41396-021-01047-0  0.78
2021 Marlow JJ, Hoer D, Jungbluth SP, Reynard LM, Gartman A, Chavez MS, El-Naggar MY, Tuross N, Orphan VJ, Girguis PR. Carbonate-hosted microbial communities are prolific and pervasive methane oxidizers at geologically diverse marine methane seep sites. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34161255 DOI: 10.1073/pnas.2006857118  0.635
2021 He X, Chadwick GL, Kempes CP, Orphan VJ, Meile C. Controls on Interspecies Electron Transport and Size Limitation of Anaerobically Methane-Oxidizing Microbial Consortia. Mbio. 12. PMID 33975943 DOI: 10.1128/mBio.03620-20  0.352
2021 Phillips AA, Speth DR, Miller LG, Wang XT, Wu F, Medeiros PM, Monteverde DR, Osburn MR, Berelson WM, Betts HL, Wijker RS, Mullin SW, Johnson HA, Orphan VJ, Fischer WW, et al. Microbial succession and dynamics in meromictic Mono Lake, California. Geobiology. PMID 33629529 DOI: 10.1111/gbi.12437  0.318
2021 Sim MS, Skennerton CT, Orphan VJ. Physiological, genomic, and sulfur isotopic characterization of methanol metabolism by Desulfovibrio carbinolicus. Plos One. 16: e0245069. PMID 33444327 DOI: 10.1371/journal.pone.0245069  0.306
2020 Mullin SW, Wanger G, Kruger BR, Sackett JD, Hamilton-Brehm SD, Bhartia R, Amend JP, Moser DP, Orphan VJ. Patterns of Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer. Frontiers in Microbiology. 11: 536535. PMID 33329414 DOI: 10.3389/fmicb.2020.536535  0.305
2020 Leu AO, McIlroy SJ, Ye J, Parks DH, Orphan VJ, Tyson GW. Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family . Mbio. 11. PMID 32605988 DOI: 10.1128/Mbio.01325-20  0.806
2020 Fincker M, Huber JA, Orphan VJ, Rappé MS, Teske A, Spormann AM. Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions. Environmental Microbiology. PMID 32372496 DOI: 10.1111/1462-2920.15061  0.466
2020 Goffredi SK, Tilic E, Mullin SW, Dawson KS, Keller A, Lee RW, Wu F, Levin LA, Rouse GW, Cordes EE, Orphan VJ. Methanotrophic bacterial symbionts fuel dense populations of deep-sea feather duster worms (Sabellida, Annelida) and extend the spatial influence of methane seepage. Science Advances. 6: eaay8562. PMID 32284974 DOI: 10.1126/Sciadv.Aay8562  0.436
2020 Leu AO, Cai C, McIlroy SJ, Southam G, Orphan VJ, Yuan Z, Hu S, Tyson GW. Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. The Isme Journal. PMID 31988473 DOI: 10.1038/S41396-020-0590-X  0.797
2019 Bublitz DC, Chadwick GL, Magyar JS, Sandoz KM, Brooks DM, Mesnage S, Ladinsky MS, Garber AI, Bjorkman PJ, Orphan VJ, McCutcheon JP. Peptidoglycan Production by an Insect-Bacterial Mosaic. Cell. PMID 31587897 DOI: 10.1016/J.Cell.2019.08.054  0.39
2019 Chadwick GL, Jiménez Otero F, Gralnick JA, Bond DR, Orphan VJ. NanoSIMS imaging reveals metabolic stratification within current-producing biofilms. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548422 DOI: 10.1073/Pnas.1912498116  0.37
2019 Bird LR, Dawson KS, Chadwick GL, Fulton JM, Orphan VJ, Freeman KH. Carbon isotopic heterogeneity of coenzyme F430 and membrane lipids in methane-oxidizing archaea. Geobiology. PMID 31364272 DOI: 10.1111/Gbi.12354  0.361
2019 Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, ... ... Orphan VJ, et al. Scientists' warning to humanity: microorganisms and climate change. Nature Reviews. Microbiology. PMID 31213707 DOI: 10.1038/S41579-019-0222-5  0.718
2019 Boyd JA, Jungbluth SP, Leu AO, Evans PN, Woodcroft BJ, Chadwick GL, Orphan VJ, Amend JP, Rappé MS, Tyson GW. Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. The Isme Journal. PMID 30651609 DOI: 10.1038/S41396-018-0343-2  0.761
2019 Sim MS, Ogata H, Lubitz W, Adkins JF, Sessions AL, Orphan VJ, McGlynn SE. Role of APS reductase in biogeochemical sulfur isotope fractionation. Nature Communications. 10: 44. PMID 30626879 DOI: 10.1038/S41467-018-07878-4  0.404
2019 He X, Chadwick G, Kempes C, Shi Y, McGlynn S, Orphan V, Meile C. Microbial interactions in the anaerobic oxidation of methane: model simulations constrained by process rates and activity patterns. Environmental Microbiology. 21: 631-647. PMID 30565827 DOI: 10.1111/1462-2920.14507  0.444
2018 Yu H, Susanti D, McGlynn SE, Skennerton CT, Chourey K, Iyer R, Scheller S, Tavormina PL, Hettich RL, Mukhopadhyay B, Orphan VJ. Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea. Frontiers in Microbiology. 9: 2917. PMID 30559729 DOI: 10.3389/Fmicb.2018.02917  0.49
2018 Speth DR, Orphan VJ. Metabolic marker gene mining provides insight in global diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the . Peerj. 6: e5614. PMID 30245936 DOI: 10.7717/Peerj.5614  0.417
2018 Yung YL, Chen P, Nealson K, Atreya S, Beckett P, Blank JG, Ehlmann B, Eiler J, Etiope G, Ferry JG, Forget F, Gao P, Hu R, Kleinböhl A, Klusman R, ... ... Orphan V, et al. Methane on Mars and Habitability: Challenges and Responses. Astrobiology. PMID 30234380 DOI: 10.1089/Ast.2018.1917  0.306
2018 Chadwick GL, Hemp J, Fischer WW, Orphan VJ. Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications. The Isme Journal. PMID 29991762 DOI: 10.1038/S41396-018-0210-1  0.352
2018 Dekas AE, Fike DA, Chadwick GL, Green-Saxena A, Fortney J, Connon SA, Dawson K, Orphan VJ. Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading. Environmental Microbiology. PMID 29968367 DOI: 10.1111/1462-2920.14342  0.366
2018 Ijiri A, Inagaki F, Kubo Y, Adhikari RR, Hattori S, Hoshino T, Imachi H, Kawagucci S, Morono Y, Ohtomo Y, Ono S, Sakai S, Takai K, Toki T, Wang DT, ... ... Orphan VJ, et al. Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex. Science Advances. 4: eaao4631. PMID 29928689 DOI: 10.1126/Sciadv.Aao4631  0.388
2018 McGlynn SE, Chadwick GL, O'Neill A, Mackey M, Thor A, Deerinck TJ, Ellisman MH, Orphan VJ. Subgroup characteristics of marine methane-oxidizing ANME-2 archaea and their syntrophic partners revealed by integrated multimodal analytical microscopy. Applied and Environmental Microbiology. PMID 29625978 DOI: 10.1128/Aem.00399-18  0.429
2017 Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F. Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment. Frontiers in Microbiology. 8: 2569. PMID 29312247 DOI: 10.3389/Fmicb.2017.02569  0.422
2017 Pasulka AL, Thamatrakoln K, Kopf SH, Guan Y, Poulos B, Moradian A, Sweredoski MJ, Hess S, Sullivan MB, Bidle KD, Orphan VJ. Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods. Environmental Microbiology. PMID 29159966 DOI: 10.1111/1462-2920.13996  0.339
2017 Trembath-Reichert E, Morono Y, Ijiri A, Hoshino T, Dawson KS, Inagaki F, Orphan VJ. Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078310 DOI: 10.1073/Pnas.1707525114  0.423
2017 Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Erratum for Skennerton et al., "Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea". Mbio. 8. PMID 28974619 DOI: 10.1128/Mbio.01561-17  0.577
2017 Marlow JJ, Steele JA, Ziebis W, Scheller S, Case D, Reynard LM, Orphan VJ. Monodeuterated Methane, an Isotopic Tool To Assess Biological Methane Metabolism Rates. Msphere. 2. PMID 28861523 DOI: 10.1128/mSphereDirect.00309-17  0.305
2017 Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. Mbio. 8. PMID 28765215 DOI: 10.1128/Mbio.00530-17  0.662
2017 Terrado R, Pasulka AL, Lie AA, Orphan VJ, Heidelberg KB, Caron DA. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis. The Isme Journal. PMID 28524870 DOI: 10.1038/Ismej.2017.68  0.376
2017 Smith DA, Sessions AL, Dalleska N, Orphan VJ. Rapid Quantification and Isotopic Analysis of Dissolved Sulfur Species. Rapid Communications in Mass Spectrometry : Rcm. PMID 28249106 DOI: 10.1002/Rcm.7846  0.396
2017 Pasulka AL, Goffredi SK, Tavormina PL, Dawson KS, Levin LA, Rouse GW, Orphan VJ. Colonial Tube-Dwelling Ciliates Influence Methane Cycling and Microbial Diversity within Methane Seep Ecosystems Frontiers in Marine Science. 3. DOI: 10.3389/Fmars.2016.00276  0.459
2017 Glass JB, Chen S, Dawson KS, Horton DR, Vogt S, Ingall ED, Twining BS, Orphan VJ. Trace Metal Imaging of Sulfate-Reducing Bacteria and Methanogenic Archaea at Single-Cell Resolution by Synchrotron X-Ray Fluorescence Imaging Geomicrobiology Journal. 35: 81-89. DOI: 10.1080/01490451.2017.1321068  0.304
2017 Fike D, Houghton J, Moore S, Gilhooly W, Dawson K, Druschel G, Amend J, Orphan V. Spatially resolved capture of hydrogen sulfide from the water column and sedimentary pore waters for abundance and stable isotopic analysis Marine Chemistry. 197: 26-37. DOI: 10.1016/J.Marchem.2017.10.004  0.385
2017 Sim MS, Paris G, Adkins JF, Orphan VJ, Sessions AL. Quantification and isotopic analysis of intracellular sulfur metabolites in the dissimilatory sulfate reduction pathway Geochimica Et Cosmochimica Acta. 206: 57-72. DOI: 10.1016/J.Gca.2017.02.024  0.384
2016 Tavormina PL, Kellermann MY, Antony CP, Tocheva E, Dalleska N, Jensen AJ, Valentine DL, Hinrichs KU, Jensen G, Dubilier N, Orphan VJ. Starvation and recovery in the deep-sea methanotroph Methyloprofundus sedimenti. Molecular Microbiology. PMID 27741568 DOI: 10.1111/Mmi.13553  0.432
2016 Miranda PJ, McLain NK, Hatzenpichler R, Orphan VJ, Dillon JG. Characterization of Chemosynthetic Microbial Mats Associated with Intertidal Hydrothermal Sulfur Vents in White Point, San Pedro, CA, USA. Frontiers in Microbiology. 7: 1163. PMID 27512390 DOI: 10.3389/Fmicb.2016.01163  0.76
2016 Fradet DT, Tavormina PL, Orphan VJ. Members of the methanotrophic genus Methylomarinum inhabit inland mud pots. Peerj. 4: e2116. PMID 27478692 DOI: 10.7717/Peerj.2116  0.397
2016 Hatzenpichler R, Connon SA, Goudeau D, Malmstrom RR, Woyke T, Orphan VJ. Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357680 DOI: 10.1073/Pnas.1603757113  0.75
2016 Dawson KS, Scheller S, Dillon JG, Orphan VJ. Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment. Frontiers in Microbiology. 7: 774. PMID 27303371 DOI: 10.3389/Fmicb.2016.00774  0.385
2016 Marlow JJ, Skennerton CT, Li Z, Chourey K, Hettich RL, Pan C, Orphan VJ. Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities. Frontiers in Microbiology. 7: 563. PMID 27199908 DOI: 10.3389/Fmicb.2016.00563  0.46
2016 Trembath-Reichert E, Case DH, Orphan VJ. Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments. Peerj. 4: e1913. PMID 27114874 DOI: 10.7717/Peerj.1913  0.47
2016 Skennerton CT, Haroon MF, Briegel A, Shi J, Jensen GJ, Tyson GW, Orphan VJ. Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps. The Isme Journal. PMID 27058507 DOI: 10.1038/Ismej.2016.55  0.663
2016 Scheller S, Yu H, Chadwick GL, McGlynn SE, Orphan VJ. Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction. Science (New York, N.Y.). 351: 703-7. PMID 26912857 DOI: 10.1126/Science.Aad7154  0.466
2016 Marlow JJ, Steele JA, Ziebis W, Scheller S, Case D, Orphan VJ. Monodeuterated methane: an isotopic probe to measure biological methane metabolism rates and track catabolic exchange reactions Biogeosciences Discussions. 1-35. DOI: 10.5194/Bg-2016-202  0.414
2015 Skennerton CT, Ward LM, Michel A, Metcalfe K, Valiente C, Mullin S, Chan KY, Gradinaru V, Orphan VJ. Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation. Frontiers in Microbiology. 6: 1425. PMID 26779119 DOI: 10.3389/Fmicb.2015.01425  0.422
2015 Case DH, Pasulka AL, Marlow JJ, Grupe BM, Levin LA, Orphan VJ. Methane Seep Carbonates Host Distinct, Diverse, and Dynamic Microbial Assemblages. Mbio. 6. PMID 26695630 DOI: 10.1128/Mbio.01348-15  0.445
2015 Pasulka AL, Levin LA, Steele JA, Case DH, Landry MR, Orphan VJ. Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem. Environmental Microbiology. PMID 26663587 DOI: 10.1111/1462-2920.13185  0.435
2015 Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. Science (New York, N.Y.). 350: 434-8. PMID 26494757 DOI: 10.1126/Science.Aac7745  0.643
2015 Dekas AE, Connon SA, Chadwick GL, Trembath-Reichert E, Orphan VJ. Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses. The Isme Journal. PMID 26394007 DOI: 10.1038/Ismej.2015.145  0.372
2015 McGlynn SE, Chadwick GL, Kempes CP, Orphan VJ. Single cell activity reveals direct electron transfer in methanotrophic consortia. Nature. 526: 531-5. PMID 26375009 DOI: 10.1038/Nature15512  0.5
2015 Mason OU, Case DH, Naehr TH, Lee RW, Thomas RB, Bailey JV, Orphan VJ. Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology. PMID 25947096 DOI: 10.1007/S00248-015-0615-6  0.426
2015 Dawson KS, Osburn MR, Sessions AL, Orphan VJ. Metabolic associations with archaea drive shifts in hydrogen isotope fractionation in sulfate-reducing bacterial lipids in cocultures and methane seeps. Geobiology. 13: 462-77. PMID 25923659 DOI: 10.1111/Gbi.12140  0.385
2015 Marlow J, Peckmann J, Orphan V. Autoendoliths: a distinct type of rock-hosted microbial life. Geobiology. 13: 303-7. PMID 25879487 DOI: 10.1111/Gbi.12131  0.363
2015 Kopf SH, McGlynn SE, Green-Saxena A, Guan Y, Newman DK, Orphan VJ. Heavy water and (15) N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats. Environmental Microbiology. 17: 2542-56. PMID 25655651 DOI: 10.1111/1462-2920.12752  0.376
2015 Tavormina PL, Hatzenpichler R, McGlynn S, Chadwick G, Dawson KS, Connon SA, Orphan VJ. Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the 'deep sea-1' clade of marine methanotrophs. International Journal of Systematic and Evolutionary Microbiology. 65: 251-9. PMID 25342114 DOI: 10.1099/Ijs.0.062927-0  0.711
2014 Bryson SJ, Thurber AR, Correa AM, Orphan VJ, Vega Thurber R. A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sediments. Environmental Microbiology. PMID 25640518 DOI: 10.1111/1462-2920.12758  0.422
2014 Marlow JJ, Steele JA, Ziebis W, Thurber AR, Levin LA, Orphan VJ. Carbonate-hosted methanotrophy represents an unrecognized methane sink in the deep sea. Nature Communications. 5: 5094. PMID 25313858 DOI: 10.1038/Ncomms6094  0.421
2014 Houghton J, Fike D, Druschel G, Orphan V, Hoehler TM, Des Marais DJ. Spatial variability in photosynthetic and heterotrophic activity drives localized δ13C org fluctuations and carbonate precipitation in hypersaline microbial mats. Geobiology. 12: 557-74. PMID 25312537 DOI: 10.1111/Gbi.12113  0.391
2014 Sivan O, Antler G, Turchyn AV, Marlow JJ, Orphan VJ. Iron oxides stimulate sulfate-driven anaerobic methane oxidation in seeps. Proceedings of the National Academy of Sciences of the United States of America. 111: E4139-47. PMID 25246590 DOI: 10.1073/Pnas.1412269111  0.434
2014 Marlow JJ, Larowe DE, Ehlmann BL, Amend JP, Orphan VJ. The potential for biologically catalyzed anaerobic methane oxidation on ancient Mars. Astrobiology. 14: 292-307. PMID 24684241 DOI: 10.1089/Ast.2013.1078  0.401
2014 Sapir A, Dillman AR, Connon SA, Grupe BM, Ingels J, Mundo-Ocampo M, Levin LA, Baldwin JG, Orphan VJ, Sternberg PW. Microsporidia-nematode associations in methane seeps reveal basal fungal parasitism in the deep sea. Frontiers in Microbiology. 5: 43. PMID 24575084 DOI: 10.3389/Fmicb.2014.00043  0.301
2014 Hatzenpichler R, Scheller S, Tavormina PL, Babin BM, Tirrell DA, Orphan VJ. In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry. Environmental Microbiology. 16: 2568-90. PMID 24571640 DOI: 10.1111/1462-2920.12436  0.719
2014 Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ. Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology. 16: 3398-415. PMID 24428801 DOI: 10.1111/1462-2920.12388  0.482
2014 Glass JB, Yu H, Steele JA, Dawson KS, Sun S, Chourey K, Pan C, Hettich RL, Orphan VJ. Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments. Environmental Microbiology. 16: 1592-611. PMID 24148160 DOI: 10.1111/1462-2920.12314  0.373
2014 Dekas AE, Chadwick GL, Bowles MW, Joye SB, Orphan VJ. Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea. Environmental Microbiology. 16: 3012-29. PMID 24107237 DOI: 10.1111/1462-2920.12247  0.326
2014 Green-Saxena A, Dekas AE, Dalleska NF, Orphan VJ. Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane Isme Journal. 8: 150-163. PMID 24008326 DOI: 10.1038/Ismej.2013.147  0.457
2014 Marlow JJ, Steele JA, Case DH, Connon SA, Levin LA, Orphan VJ. Microbial abundance and diversity patterns associated with sediments and carbonates from the methane seep environments of Hydrate Ridge, OR Frontiers in Marine Science. 1. DOI: 10.3389/Fmars.2014.00044  0.435
2014 Crespo-Medina M, Meile CD, Hunter KS, Diercks AR, Asper VL, Orphan VJ, Tavormina PL, Nigro LM, Battles JJ, Chanton JP, Shiller AM, Joung DJ, Amon RMW, Bracco A, Montoya JP, et al. The rise and fall of methanotrophy following a deepwater oil-well blowout Nature Geoscience. 7: 423-427. DOI: 10.1038/Ngeo2156  0.39
2013 Trembath-Reichert E, Green-Saxena A, Orphan VJ. Whole cell immunomagnetic enrichment of environmental microbial consortia using rRNA-targeted Magneto-FISH. Methods in Enzymology. 531: 21-44. PMID 24060114 DOI: 10.1016/B978-0-12-407863-5.00002-2  0.381
2013 Ussler W, Preston C, Tavormina P, Pargett D, Jensen S, Roman B, Marin R, Shah SR, Girguis PR, Birch JM, Orphan V, Scholin C. Autonomous application of quantitative PCR in the deep sea: in situ surveys of aerobic methanotrophs using the deep-sea environmental sample processor. Environmental Science & Technology. 47: 9339-46. PMID 23883184 DOI: 10.1021/Es4023199  0.742
2013 Bailey JV, Corsetti FA, Greene SE, Crosby CH, Liu P, Orphan VJ. Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments: implications for the role of oxygen and bacteria in phosphogenesis. Geobiology. 11: 397-405. PMID 23786451 DOI: 10.1111/Gbi.12046  0.466
2013 Tavormina PL, Ussler W, Steele JA, Connon SA, Klotz MG, Orphan VJ. Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone. Environmental Microbiology Reports. 5: 414-23. PMID 23754722 DOI: 10.1111/1758-2229.12025  0.31
2013 Yang S, Matsen JB, Konopka M, Green-Saxena A, Clubb J, Sadilek M, Orphan VJ, Beck D, Kalyuzhnaya MG. Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics and 13C-Labeling Study. Frontiers in Microbiology. 4: 70. PMID 23565113 DOI: 10.3389/Fmicb.2013.00070  0.357
2012 McGlynn SE, Boyd ES, Peters JW, Orphan VJ. Classifying the metal dependence of uncharacterized nitrogenases. Frontiers in Microbiology. 3: 419. PMID 23440025 DOI: 10.3389/Fmicb.2012.00419  0.309
2012 Green-Saxena A, Feyzullayev A, Hubert CR, Kallmeyer J, Krueger M, Sauer P, Schulz HM, Orphan VJ. Active sulfur cycling by diverse mesophilic and thermophilic microorganisms in terrestrial mud volcanoes of Azerbaijan. Environmental Microbiology. 14: 3271-86. PMID 23116231 DOI: 10.1111/1462-2920.12015  0.491
2012 Thurber AR, Levin LA, Orphan VJ, Marlow JJ. Archaea in metazoan diets: implications for food webs and biogeochemical cycling. The Isme Journal. 6: 1602-12. PMID 22402398 DOI: 10.1038/Ismej.2012.16  0.365
2012 Levin LA, Orphan VJ, Rouse GW, Rathburn AE, Ussler W, Cook GS, Goffredi SK, Perez EM, Waren A, Grupe BM, Chadwick G, Strickrott B. A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems. Proceedings. Biological Sciences / the Royal Society. 279: 2580-8. PMID 22398162 DOI: 10.1098/Rspb.2012.0205  0.35
2012 Glass JB, Orphan VJ. Trace metal requirements for microbial enzymes involved in the production and consumption of methane and nitrous oxide. Frontiers in Microbiology. 3: 61. PMID 22363333 DOI: 10.3389/Fmicb.2012.00061  0.341
2012 Harrison BK, Orphan VJ. Method for Assessing Mineral Composition-Dependent Patterns in Microbial Diversity Using Magnetic and Density Separation Geomicrobiology Journal. 29: 435-449. DOI: 10.1080/01490451.2011.581327  0.412
2011 House CH, Beal EJ, Orphan VJ. The Apparent Involvement of ANMEs in Mineral Dependent Methane Oxidation, as an Analog for Possible Martian Methanotrophy. Life (Basel, Switzerland). 1: 19-33. PMID 25382054 DOI: 10.3390/Life1010019  0.47
2011 Shapiro OH, Hatzenpichler R, Buckley DH, Zinder SH, Orphan VJ. Multicellular photo-magnetotactic bacteria. Environmental Microbiology Reports. 3: 233-8. PMID 23761255 DOI: 10.1111/J.1758-2229.2010.00215.X  0.685
2011 Tavormina PL, Orphan VJ, Kalyuzhnaya MG, Jetten MS, Klotz MG. A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environmental Microbiology Reports. 3: 91-100. PMID 23761236 DOI: 10.1111/J.1758-2229.2010.00192.X  0.428
2011 Bailey JV, Salman V, Rouse GW, Schulz-Vogt HN, Levin LA, Orphan VJ. Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria. The Isme Journal. 5: 1926-35. PMID 21697959 DOI: 10.1038/Ismej.2011.66  0.388
2011 Dekas AE, Orphan VJ. Identification of diazotrophic microorganisms in marine sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS). Methods in Enzymology. 486: 281-305. PMID 21185440 DOI: 10.1016/B978-0-12-381294-0.00012-2  0.396
2011 Orphan V. Fish-Sims: Characterizing the Metabolic Potential and Interspecies Interactions between Uncultured Environmental Microorganisms Biophysical Journal. 100: 37a. DOI: 10.1016/J.Bpj.2010.12.406  0.405
2010 Tavormina PL, Ussler W, Joye SB, Harrison BK, Orphan VJ. Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. The Isme Journal. 4: 700-10. PMID 20147984 DOI: 10.1038/Ismej.2009.155  0.405
2010 Goffredi SK, Orphan VJ. Bacterial community shifts in taxa and diversity in response to localized organic loading in the deep sea. Environmental Microbiology. 12: 344-63. PMID 19799620 DOI: 10.1111/J.1462-2920.2009.02072.X  0.398
2010 Bailey JV, Raub TD, Meckler AN, Harrison BK, Raub TMD, Green AM, Orphan VJ. Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia Palaeogeography, Palaeoclimatology, Palaeoecology. 285: 131-142. DOI: 10.1016/J.Palaeo.2009.11.002  0.38
2009 Bailey JV, Orphan VJ, Joye SB, Corsetti FA. Chemotrophic microbial mats and their potential for preservation in the rock record. Astrobiology. 9: 843-59. PMID 19968462 DOI: 10.1089/Ast.2008.0314  0.484
2009 Dekas AE, Poretsky RS, Orphan VJ. Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia. Science (New York, N.Y.). 326: 422-6. PMID 19833965 DOI: 10.1126/Science.1178223  0.42
2009 Beal EJ, House CH, Orphan VJ. Manganese- and iron-dependent marine methane oxidation Science. 325: 184-187. PMID 19589998 DOI: 10.1126/Science.1169984  0.409
2009 House CH, Orphan VJ, Turk KA, Thomas B, Pernthaler A, Vrentas JM, Joye SB. Extensive carbon isotopic heterogeneity among methane seep microbiota Environmental Microbiology. 11: 2207-2215. PMID 19508338 DOI: 10.1111/J.1462-2920.2009.01934.X  0.369
2009 Orphan VJ, House CH. Geobiological investigations using secondary ion mass spectrometry: Microanalysis of extant and paleo-microbial processes Geobiology. 7: 360-372. PMID 19493017 DOI: 10.1111/J.1472-4669.2009.00201.X  0.345
2009 Orphan VJ. Methods for unveiling cryptic microbial partnerships in nature. Current Opinion in Microbiology. 12: 231-7. PMID 19447672 DOI: 10.1016/J.Mib.2009.04.003  0.391
2009 Orphan VJ, Turk KA, Green AM, House CH. Patterns of 15N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS. Environmental Microbiology. 11: 1777-91. PMID 19383036 DOI: 10.1111/J.1462-2920.2009.01903.X  0.395
2009 Harrison BK, Zhang H, Berelson W, Orphan VJ. Variations in archaeal and bacterial diversity associated with the sulfate-methane transition zone in continental margin sediments (Santa Barbara Basin, California). Applied and Environmental Microbiology. 75: 1487-99. PMID 19139232 DOI: 10.1128/Aem.01812-08  0.485
2009 Fike DA, Finke N, Zha J, Blake G, Hoehler TM, Orphan VJ. The effect of sulfate concentration on (sub)millimeter-scale sulfide δ34S in hypersaline cyanobacterial mats over the diurnal cycle Geochimica Et Cosmochimica Acta. 73: 6187-6204. DOI: 10.1016/J.Gca.2009.07.006  0.394
2008 Jahnke LL, Orphan VJ, Embaye T, Turk KA, Kubo MD, Summons RE, DES Marais DJ. Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment. Geobiology. 6: 394-410. PMID 18564188 DOI: 10.1111/J.1472-4669.2008.00165.X  0.348
2008 Orphan VJ, Jahnke LL, Embaye T, Turk KA, Pernthaler A, Summons RE, Des Marais DJ. Characterization and spatial distribution of methanogens and methanogenic biosignatures in hypersaline microbial mats of Baja California Geobiology. 6: 376-393. PMID 18564187 DOI: 10.1111/J.1472-4669.2008.00166.X  0.393
2008 Fike DA, Gammon CL, Ziebis W, Orphan VJ. Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. The Isme Journal. 2: 749-59. PMID 18528418 DOI: 10.1038/Ismej.2008.39  0.389
2008 Tavormina PL, Ussler W, Orphan VJ. Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin. Applied and Environmental Microbiology. 74: 3985-95. PMID 18487407 DOI: 10.1128/Aem.00069-08  0.436
2008 Pernthaler A, Dekas AE, Brown CT, Goffredi SK, Embaye T, Orphan VJ. Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Proceedings of the National Academy of Sciences of the United States of America. 105: 7052-7. PMID 18467493 DOI: 10.1073/Pnas.0711303105  0.508
2008 Goffredi SK, Wilpiszeski R, Lee R, Orphan VJ. Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California. The Isme Journal. 2: 204-20. PMID 18219285 DOI: 10.1038/Ismej.2007.103  0.435
2008 Moran JJ, Beal EJ, Vrentas JM, Orphan VJ, Freeman KH, House CH. Methyl sulfides as intermediates in the anaerobic oxidation of methane Environmental Microbiology. 10: 162-173. PMID 17903217 DOI: 10.1111/J.1462-2920.2007.01441.X  0.4
2007 Treude T, Orphan V, Knittel K, Gieseke A, House CH, Boetius A. Consumption of methane and CO2 by methanotrophic microbial mats from gas seeps of the anoxic Black Sea Applied and Environmental Microbiology. 73: 2271-2283. PMID 17277205 DOI: 10.1128/Aem.02685-06  0.413
2007 Naehr TH, Eichhubl P, Orphan VJ, Hovland M, Paull CK, Ussler W, Lorenson TD, Greene HG. Authigenic carbonate formation at hydrocarbon seeps in continental margin sediments: A comparative study Deep-Sea Research Part Ii: Topical Studies in Oceanography. 54: 1268-1291. DOI: 10.1016/J.Dsr2.2007.04.010  0.352
2005 Goffredi SK, Orphan VJ, Rouse GW, Jahnke L, Embaye T, Turk K, Lee R, Vrijenhoek RC. Evolutionary innovation: a bone-eating marine symbiosis. Environmental Microbiology. 7: 1369-78. PMID 16104860 DOI: 10.1111/J.1462-2920.2005.00824.X  0.328
2004 Goffredi SK, Warén A, Orphan VJ, Van Dover CL, Vrijenhoek RC. Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean. Applied and Environmental Microbiology. 70: 3082-90. PMID 15128570 DOI: 10.1128/Aem.70.5.3082-3090.2004  0.391
2004 Orphan VJ, Ussler W, Naehr TH, House CH, Hinrichs KU, Paull CK. Geological, geochemical, and microbiological heterogeneity of the seafloor around methane vents in the Eel River Basin, offshore California Chemical Geology. 205: 265-289. DOI: 10.1016/J.Chemgeo.2003.12.035  0.44
2003 Girguis PR, Orphan VJ, Hallam SJ, DeLong EF. Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor. Applied and Environmental Microbiology. 69: 5472-82. PMID 12957936 DOI: 10.1128/Aem.69.9.5472-5482.2003  0.774
2003 Orphan VJ, Goffredi SK, Delong EF, Boles JR. Geochemical influence on diversity and microbial processes in high temperature oil reservoirs Geomicrobiology Journal. 20: 295-311. DOI: 10.1080/01490450303898  0.598
2002 Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments Proceedings of the National Academy of Sciences of the United States of America. 99: 7663-7668. PMID 12032340 DOI: 10.1073/Pnas.072210299  0.645
2001 Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis Science. 293: 484-487. PMID 11463914 DOI: 10.1126/Science.1061338  0.628
2001 Orphan VJ, Hinrichs KU, Ussler W, Paull CK, Taylor LT, Sylva SP, Hayes JM, Delong EF. Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Applied and Environmental Microbiology. 67: 1922-34. PMID 11282650 DOI: 10.1128/Aem.67.4.1922-1934.2001  0.647
2000 Orphan VJ, Taylor LT, Hafenbradl D, Delong EF. Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology. 66: 700-11. PMID 10653739 DOI: 10.1128/Aem.66.2.700-711.2000  0.593
2000 Hinrichs KU, Summons RE, Orphan V, Sylva SP, Hayes JM. Molecular and isotopic analysis of anaerobic methaneoxidizing communities in marine sediments Organic Geochemistry. 31: 1685-1701. DOI: 10.1016/S0146-6380(00)00106-6  0.449
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