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Julia Y. Cui, Ph.D. - Publications

Affiliations: 
2010 Pharmacology, Toxicology & Therapeutics University of Kansas, Lawrence, KS, United States 
Area:
Toxicology, Pharmacology, Molecular Biology
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lopez VA, Lim JL, Seguin RP, Dempsey JL, Kunzman G, Cui JY, Xu L. Oral Exposure to Benzalkonium Chlorides in Male and Female Mice Reveals Sex-Dependent Alteration of the Gut Microbiome and Bile Acid Profile. Biorxiv : the Preprint Server For Biology. PMID 38798482 DOI: 10.1101/2024.05.13.593991  0.35
2024 Lim JJ, Goedken M, Jin Y, Gu H, Cui JY. Single cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a pro-inflammatory metabolic signature in male mice at late adulthood. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 38648751 DOI: 10.1093/toxsci/kfae047  0.381
2024 Li X, Wang H, Wang H, Bullert AJ, Cui JY, Wang K, Lehmler HJ. Germ-free Status but Not Subacute Polychlorinated Biphenyl (PCB) Exposure Altered Hepatic Phosphatidylcholine and Ether-Phosphatidylcholine Levels in Mice. Toxicology. 153790. PMID 38552894 DOI: 10.1016/j.tox.2024.153790  0.328
2022 Wang H, Zhang L, Xia Z, Cui JY. Effects of chronic cadmium exposure on brain and liver transporters and drug-metabolizing enzymes in male and female mice genetically predisposed to Alzheimer's disease. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 35878927 DOI: 10.1124/dmd.121.000453  0.325
2021 Zhang A, Matsushita M, Zhang L, Wang H, Shi X, Gu H, Xia Z, Cui JY. Cadmium exposure modulates the gut-liver axis in an Alzheimer's disease mouse model. Communications Biology. 4: 1398. PMID 34912029 DOI: 10.1038/s42003-021-02898-1  0.343
2021 Dutta M, Lim JJ, Cui JY. . Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 34862253 DOI: 10.1124/dmd.121.000415  0.308
2021 Lim JJ, Suh Y, Faustman EM, Cui JY. Regulation of transporters by perfluorinated carboxylic acids in HepaRG cells. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 34857530 DOI: 10.1124/dmd.121.000477  0.362
2021 Ioannou GN, Lee SP, Linsley PS, Gersuk V, Yeh MM, Chen YY, Peng YJ, Dutta M, Mascarinas G, Molla B, Cui JY, Savard C. Pcsk9 Deletion Promotes Murine Nonalcoholic Steatohepatitis and Hepatic Carcinogenesis: Role of Cholesterol. Hepatology Communications. PMID 34816633 DOI: 10.1002/hep4.1858  0.343
2021 Fu ZD, Selwyn FP, Cui JY, Klaassen CD. RNA-Seq unveiled section-specific host response to lack of gut microbiota in mouse intestine. Toxicology and Applied Pharmacology. 115775. PMID 34715074 DOI: 10.1016/j.taap.2021.115775  0.546
2021 Kim S, Choi S, Dutta M, Asubonteng JO, Polunas M, Goedken M, Gonzalez FJ, Cui JY, Gyamfi MA. Pregnane X receptor exacerbates nonalcoholic fatty liver disease accompanied by obesity- and inflammation-prone gut microbiome signature. Biochemical Pharmacology. 114698. PMID 34303710 DOI: 10.1016/j.bcp.2021.114698  0.343
2021 Li N, Koester ST, Lachance DM, Dutta M, Cui JY, Dey N. Microbiome-encoded bile acid metabolism modulates colonic transit times. Iscience. 24: 102508. PMID 34142026 DOI: 10.1016/j.isci.2021.102508  0.303
2020 Liu J, Cui JY, Lu YF, Corton JC, Klaassen CD. Sex-, age-, and race/ethnicity-dependent variations in drug-processing and NRF2-regulated genes in human livers. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 33162398 DOI: 10.1124/dmd.120.000181  0.547
2020 Lim JJ, Li X, Lehmler HJ, Wang D, Gu H, Cui JY. Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Transcriptome in Mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 32544245 DOI: 10.1093/Toxsci/Kfaa090  0.381
2020 Han LW, Wang L, Shi Y, Dempsey JL, Pershutkina OV, Dutta M, Bammler TK, Cui JY, Mao Q. . Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 32499338 DOI: 10.1124/dmd.120.000039  0.356
2020 Zhang A, Li CY, Kelly EJ, Sheppard L, Cui JY. Transcriptomic profiling of PBDE-exposed HepaRG cells unveils critical lncRNA- PCG pairs involved in intermediary metabolism. Plos One. 15: e0224644. PMID 32101552 DOI: 10.1371/Journal.Pone.0224644  0.312
2020 Lim J, Dempsey J, Lehmler H, MacDonald J, Bammler T, Kavanagh T, Cui JY. P193 - Persistent regulation of hepatic non-coding RNAS following neonatal exposure to BPA, BDE-99, and PCBS Drug Metabolism and Pharmacokinetics. 35. DOI: 10.1016/J.Dmpk.2020.04.194  0.3
2020 Dempsey J, Lim J, MacDonald J, Bammler T, Kavanagh T, Cui JY. P105 - BDE-99 reprograms the liver epigenome persistnently altering the transcriptome Drug Metabolism and Pharmacokinetics. 35. DOI: 10.1016/J.Dmpk.2020.04.106  0.412
2019 Scoville DK, Li CY, Wang D, Demspey JL, Raftery D, Mani S, Gu H, Cui JY. PBDEs and Gut Microbiome Modulate Metabolic Syndrome-Related Aqueous Metabolites in Mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 31123037 DOI: 10.1124/Dmd.119.086538  0.386
2019 Wu KC, Cui JY, Liu J, Lu H, Zhong XB, Klaassen CD. RNA-Seq provides new insights on the relative mRNA abundance of antioxidant components during mouse liver development. Free Radical Biology & Medicine. PMID 30659941 DOI: 10.1016/J.Freeradbiomed.2019.01.017  0.523
2018 Dempsey JL, Cui JY. Regulation of Hepatic Long Non-coding RNAs by PXR and CAR Agonists in Mouse Liver. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 30593543 DOI: 10.1124/dmd.118.085142  0.379
2018 Cheng SL, Li X, Lehmler HJ, Phillips B, Shen D, Cui JY. Gut Microbiota Modulates Interactions Between Polychlorinated Biphenyls and Bile Acid Homeostasis. Toxicological Sciences : An Official Journal of the Society of Toxicology. 166: 269-287. PMID 30496569 DOI: 10.1093/toxsci/kfy208  0.374
2018 Dempsey J, Zhang A, Cui JY. Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice. Bmc Genomics. 19: 834. PMID 30463508 DOI: 10.1186/s12864-018-5235-3  0.305
2018 Li CY, Cui JY. Regulation of protein-coding gene and long noncoding RNA pairs in liver of conventional and germ-free mice following oral PBDE exposure. Plos One. 13: e0201387. PMID 30067809 DOI: 10.1371/journal.pone.0201387  0.442
2018 Li CY, Dempsey JL, Wang D, Lee S, Weigel KM, Fei Q, Bhatt DK, Prasad B, Raftery D, Gu H, Cui JY. PBDEs Altered Gut Microbiome and Bile Acid Homeostasis in Male C57BL/6 Mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 29769268 DOI: 10.1124/Dmd.118.081547  0.442
2018 Morgan ET, Dempsey JL, Mimche SM, Lamb TJ, Kulkarni S, Cui JY, Jeong H, Slitt AL. Physiological Regulation of Drug Metabolism and Transport: Pregnancy, Microbiome, Inflammation, Infection, and Fasting. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 29514828 DOI: 10.1124/Dmd.117.079905  0.336
2018 Cui JY. Understanding the GUT microbiome-liver axis in xenobiotic biotransformation Drug Metabolism and Pharmacokinetics. 33: S10. DOI: 10.1016/J.DMPK.2017.11.047  0.32
2017 Fu ZD, Selwyn FP, Cui JY, Klaassen CD. RNA-Seq Profiling of Intestinal Expression of Xenobiotic Processing Genes in Germ-Free Mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 28939687 DOI: 10.1124/Dmd.117.077313  0.584
2017 Li CY, Lee S, Cade S, Kuo LJ, Schultz IR, Bhatt DK, Prasad B, Bammler TK, Cui JY. Novel Interactions between Gut Microbiome and Host Drug-processing Genes Modify the Hepatic Metabolism of the Environmental Chemicals PBDEs. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 28864748 DOI: 10.1124/dmd.117.077024  0.467
2017 Cheng SL, Bammler TK, Cui JY. RNA-Seq Reveals Age- and Species Differences of CAR-targeted Drug-Processing Genes in Liver. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 28232382 DOI: 10.1124/dmd.117.075135  0.384
2016 Park S, Cheng SL, Cui JY. Characterizing drug-metabolizing enzymes and transporters that are bona fide CAR-target genes in mouse intestine. Acta Pharmaceutica Sinica. B. 6: 475-491. PMID 27709017 DOI: 10.1016/j.apsb.2016.07.004  0.523
2016 Guo Y, Cui JY, Lu H, Klaassen CD. Effect of nine diets on mRNAs of phase-II conjugation enzymes in livers of mice. Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 1-10. PMID 27686132 DOI: 10.1080/00498254.2016.1213926  0.562
2016 Li CY, Cheng SL, Bammler TK, Cui JY. Neonatal Activation of the Xenobiotic-sensors PXR and CAR Results in Acute and Persistent Down-regulation of PPARα-signaling in Mouse Liver. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 27413110 DOI: 10.1093/toxsci/kfw127  0.438
2016 Cui JY, Klaassen CD. RNA-Seq Reveals Common and Unique PXR- and CAR-target Gene Signatures in the Mouse Liver Transcriptome. Biochimica Et Biophysica Acta. PMID 27113289 DOI: 10.1016/J.Bbagrm.2016.04.010  0.578
2016 Fu ZD, Selwyn FP, Cui JY, Klaassen CD. RNA-Seq Quantification of Xenobiotic Processing Genes in Various Sections of the Intestine in Comparison to the Liver of Male Mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 27048750 DOI: 10.1124/Dmd.115.068270  0.602
2015 Selwyn FP, Cheng SL, Klaassen CD, Cui JY. Regulation of Hepatic Drug-metabolizing Enzymes in Germ-free mice by Conventionalization and Probiotics. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 26586378 DOI: 10.1124/Dmd.115.067504  0.563
2015 Li CY, Renaud HJ, Klaassen CD, Cui JY. Age-specific Regulation of Drug-processing Genes in Mouse Liver by Ligands of Xenobiotic-sensing Transcription Factors. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 26577535 DOI: 10.1124/Dmd.115.066639  0.526
2015 Gunewardena SS, Yoo B, Peng L, Lu H, Zhong X, Klaassen CD, Cui JY. Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome. Plos One. 10: e0141220. PMID 26496202 DOI: 10.1371/Journal.Pone.0141220  0.538
2015 Fu ZD, Cui JY, Klaassen CD. The Role of Sirt1 in Bile Acid Regulation during Calorie Restriction in Mice. Plos One. 10: e0138307. PMID 26372644 DOI: 10.1371/Journal.Pone.0138307  0.523
2015 Klaassen CD, Cui JY. Review: Mechanisms of How the Intestinal Microbiota Alters the Effects of Drugs and Bile Acids. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 26261286 DOI: 10.1124/Dmd.115.065698  0.49
2015 Selwyn FP, Cheng SL, Bammler TK, Prasad B, Vrana M, Klaassen C, Cui JY. Developmental Regulation of Drug-processing Genes in Livers of Germ-free Mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 26032512 DOI: 10.1093/Toxsci/Kfv110  0.652
2015 Selwyn FP, Cui JY, Klaassen CD. RNA-Seq Quantification of Hepatic Drug Processing Genes in Germ-Free mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 25956306 DOI: 10.1124/Dmd.115.063545  0.652
2015 Guo Y, Cui JY, Lu H, Klaassen CD. Effect of various diets on the expression of phase-I drug-metabolizing enzymes in livers of mice. Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 45: 586-97. PMID 25733028 DOI: 10.3109/00498254.2015.1006300  0.569
2015 Song P, Rockwell CE, Cui JY, Klaassen CD. Individual bile acids have differential effects on bile acid signaling in mice. Toxicology and Applied Pharmacology. 283: 57-64. PMID 25582706 DOI: 10.1016/J.Taap.2014.12.005  0.643
2015 Guo Y, Cui JY, Lu H, Klaassen CD. Effect of nine diets on xenobiotic transporters in livers of mice. Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 45: 634-41. PMID 25566878 DOI: 10.3109/00498254.2014.1001009  0.573
2014 Fu ZD, Cui JY, Klaassen CD. Atorvastatin induces bile acid-synthetic enzyme Cyp7a1 by suppressing FXR signaling in both liver and intestine in mice. Journal of Lipid Research. 55: 2576-86. PMID 25278499 DOI: 10.1194/Jlr.M053124  0.671
2014 Liu J, Lu H, Lu YF, Lei X, Cui JY, Ellis E, Strom SC, Klaassen CD. Potency of individual bile acids to regulate bile acid synthesis and transport genes in primary human hepatocyte cultures. Toxicological Sciences : An Official Journal of the Society of Toxicology. 141: 538-46. PMID 25055961 DOI: 10.1093/Toxsci/Kfu151  0.625
2014 Renaud HJ, Cui JY, Lu H, Klaassen CD. Effect of diet on expression of genes involved in lipid metabolism, oxidative stress, and inflammation in mouse liver-insights into mechanisms of hepatic steatosis. Plos One. 9: e88584. PMID 24551121 DOI: 10.1371/Journal.Pone.0088584  0.511
2013 Peng L, Cui JY, Yoo B, Gunewardena SS, Lu H, Klaassen CD, Zhong XB. RNA-sequencing quantification of hepatic ontogeny of phase-I enzymes in mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 41: 2175-86. PMID 24080161 DOI: 10.1124/Dmd.113.054635  0.621
2013 Lu H, Gunewardena S, Cui JY, Yoo B, Zhong XB, Klaassen CD. RNA-sequencing quantification of hepatic ontogeny and tissue distribution of mRNAs of phase II enzymes in mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 41: 844-57. PMID 23382457 DOI: 10.1124/Dmd.112.050211  0.581
2012 Aleksunes LM, Yeager RL, Wen X, Cui JY, Klaassen CD. Repression of hepatobiliary transporters and differential regulation of classic and alternative bile acid pathways in mice during pregnancy. Toxicological Sciences : An Official Journal of the Society of Toxicology. 130: 257-68. PMID 22903823 DOI: 10.1093/Toxsci/Kfs248  0.651
2012 Wu KC, Cui JY, Klaassen CD. Effect of graded Nrf2 activation on phase-I and -II drug metabolizing enzymes and transporters in mouse liver. Plos One. 7: e39006. PMID 22808024 DOI: 10.1371/Journal.Pone.0039006  0.639
2012 Lu H, Cui JY, Gunewardena S, Yoo B, Zhong XB, Klaassen CD. Hepatic ontogeny and tissue distribution of mRNAs of epigenetic modifiers in mice using RNA-sequencing. Epigenetics. 7: 914-29. PMID 22772165 DOI: 10.4161/Epi.21113  0.603
2012 Cui JY, Gunewardena SS, Yoo B, Liu J, Renaud HJ, Lu H, Zhong XB, Klaassen CD. RNA-Seq reveals different mRNA abundance of transporters and their alternative transcript isoforms during liver development. Toxicological Sciences : An Official Journal of the Society of Toxicology. 127: 592-608. PMID 22454430 DOI: 10.1093/Toxsci/Kfs107  0.616
2012 Cui JY, Renaud HJ, Klaassen CD. Ontogeny of novel cytochrome P450 gene isoforms during postnatal liver maturation in mice. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 40: 1226-37. PMID 22446519 DOI: 10.1124/Dmd.111.042697  0.517
2012 Cui JY, Aleksunes LM, Tanaka Y, Fu ZD, Guo Y, Guo GL, Lu H, Zhong XB, Klaassen CD. Bile acids via FXR initiate the expression of major transporters involved in the enterohepatic circulation of bile acids in newborn mice. American Journal of Physiology. Gastrointestinal and Liver Physiology. 302: G979-96. PMID 22268101 DOI: 10.1152/Ajpgi.00370.2011  0.677
2011 Renaud HJ, Cui JY, Khan M, Klaassen CD. Tissue distribution and gender-divergent expression of 78 cytochrome P450 mRNAs in mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 124: 261-77. PMID 21920951 DOI: 10.1093/Toxsci/Kfr240  0.568
2011 Wu KC, Cui JY, Klaassen CD. Beneficial role of Nrf2 in regulating NADPH generation and consumption. Toxicological Sciences : An Official Journal of the Society of Toxicology. 123: 590-600. PMID 21775727 DOI: 10.1093/Toxsci/Kfr183  0.605
2011 Klaassen CD, Lu H, Cui JY. Epigenetic regulation of drug processing genes. Toxicology Mechanisms and Methods. 21: 312-24. PMID 21495869 DOI: 10.3109/15376516.2011.562758  0.561
2010 Cui JY, Gunewardena SS, Rockwell CE, Klaassen CD. ChIPing the cistrome of PXR in mouse liver. Nucleic Acids Research. 38: 7943-63. PMID 20693526 DOI: 10.1093/Nar/Gkq654  0.546
2010 Cui JY, Choudhuri S, Knight TR, Klaassen CD. Genetic and epigenetic regulation and expression signatures of glutathione S-transferases in developing mouse liver. Toxicological Sciences : An Official Journal of the Society of Toxicology. 116: 32-43. PMID 20395309 DOI: 10.1093/Toxsci/Kfq115  0.599
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