| Year |
Citation |
Score |
| 2020 |
Corsi F, Lavery R, Laine E, Carbone A. Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. Plos Computational Biology. 16: e1007624. PMID 32012150 DOI: 10.1371/journal.pcbi.1007624 |
0.354 |
|
| 2019 |
Dans PD, Balaceanu A, Pasi M, Patelli AS, Petkevičiūtė D, Walther J, Hospital A, Bayarri G, Lavery R, Maddocks JH, Orozco M. The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules. Nucleic Acids Research. PMID 31624840 DOI: 10.1093/Nar/Gkz905 |
0.479 |
|
| 2019 |
Frezza E, Lavery R. Internal Coordinate Normal Mode Analysis: A Strategy to Predict Protein Conformational Transitions. The Journal of Physical Chemistry. B. PMID 30665293 DOI: 10.1021/Acs.Jpcb.8B11913 |
0.306 |
|
| 2018 |
Frezza E, Martin J, Lavery R. A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding. Plos One. 13: e0196207. PMID 29694437 DOI: 10.1371/Journal.Pone.0196207 |
0.305 |
|
| 2017 |
Reymer A, Zakrzewska K, Lavery R. Sequence-dependent response of DNA to torsional stress: a potential biological regulation mechanism. Nucleic Acids Research. PMID 29267977 DOI: 10.1093/Nar/Gkx1270 |
0.48 |
|
| 2017 |
Etheve L, Martin J, Lavery R. Decomposing protein-DNA binding and recognition using simplified protein models. Nucleic Acids Research. 45: 10270-10283. PMID 28973439 DOI: 10.1093/Nar/Gkx627 |
0.471 |
|
| 2017 |
Bednar J, Garcia-Saez I, Boopathi R, Cutter AR, Papai G, Reymer A, Syed SH, Lone IN, Tonchev O, Crucifix C, Menoni H, Papin C, Skoufias DA, Kurumizaka H, Lavery R, et al. Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. Molecular Cell. 66: 384-397.e8. PMID 28475873 DOI: 10.1016/J.Molcel.2017.04.012 |
0.307 |
|
| 2017 |
Pasi M, Zakrzewska K, Maddocks JH, Lavery R. Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles. Nucleic Acids Research. PMID 28180333 DOI: 10.1093/Nar/Gkx092 |
0.394 |
|
| 2016 |
Balaceanu A, Pasi M, Dans PD, Hospital A, Lavery R, Orozco M. The Role of Unconventional Hydrogen Bonds in Determining BII Propensities in B-DNA. The Journal of Physical Chemistry Letters. 21-28. PMID 27935717 DOI: 10.1021/Acs.Jpclett.6B02451 |
0.519 |
|
| 2016 |
Pasi M, Angelov D, Bednar J, Dimitrov S, Lavery R. Extra views on Structure and dynamics of DNA loops on nucleosomes studied with molecular simulations. Nucleus (Austin, Tex.). 0. PMID 27874316 DOI: 10.1080/19491034.2016.1260800 |
0.472 |
|
| 2016 |
Etheve L, Martin J, Lavery R. Protein-DNA interfaces: a molecular dynamics analysis of time-dependent recognition processes for three transcription factors. Nucleic Acids Research. PMID 27658967 DOI: 10.1093/Nar/Gkw841 |
0.481 |
|
| 2016 |
Pasi M, Mornico D, Volant S, Juchet A, Batisse J, Bouchier C, Parissi V, Ruff M, Lavery R, Lavigne M. DNA minicircles clarify the specific role of DNA structure on retroviral integration. Nucleic Acids Research. PMID 27439712 DOI: 10.1093/Nar/Gkw651 |
0.434 |
|
| 2016 |
Pasi M, Lavery R. Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics. Nucleic Acids Research. PMID 27098037 DOI: 10.1093/Nar/Gkw293 |
0.475 |
|
| 2016 |
Dans PD, Danilāne L, Ivani I, Dršata T, Lankaš F, Hospital A, Walther J, Pujagut RI, Battistini F, Gelpí JL, Lavery R, Orozco M. Long-timescale dynamics of the Drew-Dickerson dodecamer. Nucleic Acids Research. PMID 27084952 DOI: 10.1093/Nar/Gkw264 |
0.414 |
|
| 2015 |
Etheve L, Martin J, Lavery R. Dynamics and recognition within a protein-DNA complex: a molecular dynamics study of the SKN-1/DNA interaction. Nucleic Acids Research. PMID 26721385 DOI: 10.1093/Nar/Gkv1511 |
0.47 |
|
| 2015 |
Pasi M, Maddocks JH, Lavery R. Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics. Nucleic Acids Research. 43: 2412-23. PMID 25662221 DOI: 10.1093/Nar/Gkv080 |
0.392 |
|
| 2014 |
Pasi M, Maddocks JH, Beveridge D, Bishop TC, Case DA, Cheatham T, Dans PD, Jayaram B, Lankas F, Laughton C, Mitchell J, Osman R, Orozco M, Pérez A, Petkevi?i?t? D, ... ... Lavery R, et al. μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA. Nucleic Acids Research. 42: 12272-83. PMID 25260586 DOI: 10.1093/Nar/Gku855 |
0.468 |
|
| 2014 |
Dans PD, Faustino I, Battistini F, Zakrzewska K, Lavery R, Orozco M. Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA. Nucleic Acids Research. 42: 11304-20. PMID 25223784 DOI: 10.1093/Nar/Gku809 |
0.357 |
|
| 2014 |
Lavery R, Maddocks JH, Pasi M, Zakrzewska K. Analyzing ion distributions around DNA. Nucleic Acids Research. 42: 8138-49. PMID 24906882 DOI: 10.1093/Nar/Gku504 |
0.375 |
|
| 2013 |
Pasi M, Lavery R, Ceres N. PaLaCe: A Coarse-Grain Protein Model for Studying Mechanical Properties. Journal of Chemical Theory and Computation. 9: 785-93. PMID 26589071 DOI: 10.1021/Ct3007925 |
0.373 |
|
| 2013 |
Meyer S, Jost D, Theodorakopoulos N, Peyrard M, Lavery R, Everaers R. Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations. Biophysical Journal. 105: 1904-14. PMID 24138866 DOI: 10.1016/J.Bpj.2013.09.004 |
0.426 |
|
| 2012 |
Ceres N, Pasi M, Lavery R. A Protein Solvation Model Based on Residue Burial. Journal of Chemical Theory and Computation. 8: 2141-4. PMID 26593844 DOI: 10.1021/Ct3001552 |
0.339 |
|
| 2012 |
Dans PD, Pérez A, Faustino I, Lavery R, Orozco M. Exploring polymorphisms in B-DNA helical conformations. Nucleic Acids Research. 40: 10668-78. PMID 23012264 DOI: 10.1093/nar/gks884 |
0.408 |
|
| 2012 |
Martin J, Lavery R. Arbitrary protein-protein docking targets biologically relevant interfaces. Bmc Biophysics. 5: 7. PMID 22559010 DOI: 10.1186/2046-1682-5-7 |
0.311 |
|
| 2012 |
Wilhelm M, Mukherjee A, Bouvier B, Zakrzewska K, Hynes JT, Lavery R. Multistep drug intercalation: molecular dynamics and free energy studies of the binding of daunomycin to DNA. Journal of the American Chemical Society. 134: 8588-96. PMID 22548344 DOI: 10.1021/Ja301649K |
0.472 |
|
| 2012 |
Zakrzewska K, Lavery R. Towards a molecular view of transcriptional control. Current Opinion in Structural Biology. 22: 160-7. PMID 22296921 DOI: 10.1016/J.Sbi.2012.01.004 |
0.428 |
|
| 2011 |
Bouvier B, Zakrzewska K, Lavery R. Protein-DNA recognition triggered by a DNA conformational switch. Angewandte Chemie (International Ed. in English). 50: 6516-8. PMID 21626631 DOI: 10.1002/Anie.201101417 |
0.505 |
|
| 2011 |
Blanchet C, Pasi M, Zakrzewska K, Lavery R. CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures. Nucleic Acids Research. 39: W68-73. PMID 21558323 DOI: 10.1093/Nar/Gkr316 |
0.323 |
|
| 2010 |
Lavery R, Zakrzewska K, Beveridge D, Bishop TC, Case DA, Cheatham T, Dixit S, Jayaram B, Lankas F, Laughton C, Maddocks JH, Michon A, Osman R, Orozco M, Perez A, et al. A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. Nucleic Acids Research. 38: 299-313. PMID 19850719 DOI: 10.1093/Nar/Gkp834 |
0.489 |
|
| 2009 |
Zakrzewska K, Bouvier B, Michon A, Blanchet C, Lavery R. Protein-DNA binding specificity: a grid-enabled computational approach applied to single and multiple protein assemblies. Physical Chemistry Chemical Physics : Pccp. 11: 10712-21. PMID 20145815 DOI: 10.1039/B910888M |
0.496 |
|
| 2009 |
Lavery R, Moakher M, Maddocks JH, Petkeviciute D, Zakrzewska K. Conformational analysis of nucleic acids revisited: Curves+. Nucleic Acids Research. 37: 5917-29. PMID 19625494 DOI: 10.1093/Nar/Gkp608 |
0.336 |
|
| 2009 |
Bouvier B, Lavery R. A free energy pathway for the interaction of the SRY protein with its binding site on DNA from atomistic simulations. Journal of the American Chemical Society. 131: 9864-5. PMID 19580270 DOI: 10.1021/Ja901761A |
0.485 |
|
| 2009 |
Prévost C, Takahashi M, Lavery R. Deforming DNA: from physics to biology. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1399-404. PMID 19492398 DOI: 10.1002/Cphc.200900253 |
0.477 |
|
| 2009 |
Curuksu J, Zacharias M, Lavery R, Zakrzewska K. Local and global effects of strong DNA bending induced during molecular dynamics simulations. Nucleic Acids Research. 37: 3766-73. PMID 19380377 DOI: 10.1093/Nar/Gkp234 |
0.495 |
|
| 2009 |
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. Plos Computational Biology. 5: e1000267. PMID 19165315 DOI: 10.1371/Journal.Pcbi.1000267 |
0.349 |
|
| 2009 |
Corbin S, Lavery R, Pullman B. The molecular electrostatic potential of DNA: The effect of countercation screening on various allomorphic forms International Journal of Quantum Chemistry. 22: 103-110. DOI: 10.1002/Qua.560220711 |
0.626 |
|
| 2009 |
Lavery R, Cauchy D, De La Luz Rojas O, Pullman A. Molecular electrostatic potential of the b-dna helix. VII. effect of screening by monovalent cations International Journal of Quantum Chemistry. 18: 323-330. DOI: 10.1002/Qua.560180731 |
0.484 |
|
| 2009 |
Lavery R, Pullman B. A theoretical model study of the mechanism of action of the enzyme glyoxylase I International Journal of Quantum Chemistry. 16: 467-474. DOI: 10.1002/Qua.560160732 |
0.485 |
|
| 2009 |
Lavery R, Oliveira MD, Pullman B. A preliminary theoretical study of the acid catalyzed hydration of glyoxal, methylglyoxal, and other simple aldehydes International Journal of Quantum Chemistry. 16: 459-466. DOI: 10.1002/Qua.560160731 |
0.517 |
|
| 2009 |
Lavery R, Pullman A, Pullman B. Model quantum-chemical studies on the reaction between the candidate proximate carcinogen benzo(a)pyrene-7,8-dihydrodiol-9,10-epoxide and guanine International Journal of Quantum Chemistry. 14: 21-34. DOI: 10.1002/Qua.560140707 |
0.531 |
|
| 2008 |
Sacquin-Mora S, Carbone A, Lavery R. Identification of protein interaction partners and protein-protein interaction sites. Journal of Molecular Biology. 382: 1276-89. PMID 18708070 DOI: 10.1016/J.Jmb.2008.08.002 |
0.317 |
|
| 2008 |
Mukherjee A, Lavery R, Bagchi B, Hynes JT. On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes. Journal of the American Chemical Society. 130: 9747-55. PMID 18611009 DOI: 10.1021/Ja8001666 |
0.49 |
|
| 2008 |
Durrieu MP, Lavery R, Baaden M. Interactions between neuronal fusion proteins explored by molecular dynamics. Biophysical Journal. 94: 3436-46. PMID 18212009 DOI: 10.1529/Biophysj.107.123117 |
0.331 |
|
| 2008 |
Deremble C, Lavery R, Zakrzewska K. Protein-DNA recognition: Breaking the combinatorial barrier Computer Physics Communications. 179: 112-119. DOI: 10.1016/J.Cpc.2008.01.033 |
0.452 |
|
| 2007 |
Lavery R, Sacquin-Mora S. Protein mechanics: a route from structure to function. Journal of Biosciences. 32: 891-8. PMID 17914231 DOI: 10.1007/S12038-007-0089-X |
0.347 |
|
| 2007 |
Sacquin-Mora S, Laforet E, Lavery R. Locating the active sites of enzymes using mechanical properties. Proteins. 67: 350-9. PMID 17311346 DOI: 10.1002/Prot.21353 |
0.331 |
|
| 2006 |
Lankas F, Lavery R, Maddocks JH. Kinking occurs during molecular dynamics simulations of small DNA minicircles. Structure (London, England : 1993). 14: 1527-34. PMID 17027501 DOI: 10.1016/J.Str.2006.08.004 |
0.483 |
|
| 2006 |
Cailliez F, Lavery R. Dynamics and stability of E-cadherin dimers. Biophysical Journal. 91: 3964-71. PMID 16980367 DOI: 10.1529/Biophysj.106.087213 |
0.325 |
|
| 2006 |
Lionnet T, Joubaud S, Lavery R, Bensimon D, Croquette V. Wringing out DNA. Physical Review Letters. 96: 178102. PMID 16712339 DOI: 10.1103/Physrevlett.96.178102 |
0.468 |
|
| 2006 |
Sacquin-Mora S, Lavery R. Investigating the local flexibility of functional residues in hemoproteins. Biophysical Journal. 90: 2706-17. PMID 16428284 DOI: 10.1529/Biophysj.105.074997 |
0.352 |
|
| 2005 |
Emanuele E, Zakrzewska K, Markovitsi D, Lavery R, Millié P. Exciton states of dynamic DNA double helices: alternating dCdG sequences. The Journal of Physical Chemistry. B. 109: 16109-18. PMID 16853047 DOI: 10.1021/Jp051833K |
0.345 |
|
| 2005 |
Lavery R. Recognizing DNA. Quarterly Reviews of Biophysics. 38: 339-44. PMID 16515738 DOI: 10.1017/S0033583505004105 |
0.415 |
|
| 2005 |
Dixit SB, Beveridge DL, Case DA, Cheatham TE, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Sklenar H, Thayer KM, Varnai P. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps. Biophysical Journal. 89: 3721-40. PMID 16169978 DOI: 10.1529/Biophysj.105.067397 |
0.487 |
|
| 2005 |
O'Flanagan RA, Paillard G, Lavery R, Sengupta AM. Non-additivity in protein-DNA binding. Bioinformatics (Oxford, England). 21: 2254-63. PMID 15746285 DOI: 10.1093/bioinformatics/bti361 |
0.333 |
|
| 2005 |
Lavery R. Course 1 DNA structure, dynamics and recognition Les Houches Summer School Proceedings. 82: 1-40. DOI: 10.1016/S0924-8099(05)80028-9 |
0.313 |
|
| 2004 |
Paillard G, Deremble C, Lavery R. Looking into DNA recognition: zinc finger binding specificity. Nucleic Acids Research. 32: 6673-82. PMID 15613596 DOI: 10.1093/Nar/Gkh1003 |
0.461 |
|
| 2004 |
Navizet I, Cailliez F, Lavery R. Probing protein mechanics: residue-level properties and their use in defining domains. Biophysical Journal. 87: 1426-35. PMID 15345525 DOI: 10.1529/Biophysj.104.042085 |
0.684 |
|
| 2004 |
Beveridge DL, Barreiro G, Byun KS, Case DA, Cheatham TE, Dixit SB, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Seibert E, Sklenar H, Stoll G, Thayer KM, et al. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps. Biophysical Journal. 87: 3799-813. PMID 15326025 DOI: 10.1529/Biophysj.104.045252 |
0.446 |
|
| 2004 |
Navizet I, Lavery R, Jernigan RL. Myosin flexibility: structural domains and collective vibrations. Proteins. 54: 384-93. PMID 14747987 DOI: 10.1002/Prot.10476 |
0.664 |
|
| 2004 |
Paillard G, Lavery R. Analyzing protein-DNA recognition mechanisms. Structure (London, England : 1993). 12: 113-22. PMID 14725771 DOI: 10.1016/J.Str.2003.11.022 |
0.492 |
|
| 2003 |
Bastard K, Thureau A, Lavery R, Prévost C. Docking macromolecules with flexible segments. Journal of Computational Chemistry. 24: 1910-20. PMID 14515373 DOI: 10.1002/Jcc.10329 |
0.408 |
|
| 2003 |
Giudice E, Lavery R. Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations. Journal of the American Chemical Society. 125: 4998-9. PMID 12708848 DOI: 10.1021/Ja034095R |
0.46 |
|
| 2003 |
Giudice E, Várnai P, Lavery R. Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations. Nucleic Acids Research. 31: 1434-43. PMID 12595551 DOI: 10.1093/Nar/Gkg239 |
0.46 |
|
| 2003 |
Harvey SC, Wang C, Teletchea S, Lavery R. Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking. Journal of Computational Chemistry. 24: 1-9. PMID 12483670 DOI: 10.1002/Jcc.10173 |
0.413 |
|
| 2003 |
Bouvier B, Dognon JP, Lavery R, Markovitsi D, Millié P, Onidas D, Zakrzewska K. Influence of conformational dynamics on the exciton states of DNA oligomers Journal of Physical Chemistry B. 107: 13512-13522. DOI: 10.1021/Jp036164U |
0.397 |
|
| 2002 |
Várnai P, Djuranovic D, Lavery R, Hartmann B. Alpha/gamma transitions in the B-DNA backbone. Nucleic Acids Research. 30: 5398-406. PMID 12490708 DOI: 10.1093/Nar/Gkf680 |
0.4 |
|
| 2002 |
Várnai P, Lavery R. Base flipping in DNA: pathways and energetics studied with molecular dynamic simulations. Journal of the American Chemical Society. 124: 7272-3. PMID 12071727 DOI: 10.1021/Ja025980X |
0.47 |
|
| 2002 |
Giudice E, Lavery R. Simulations of nucleic acids and their complexes. Accounts of Chemical Research. 35: 350-7. PMID 12069619 DOI: 10.1021/Ar010023Y |
0.367 |
|
| 2002 |
Lavery R, Lebrun A, Allemand JF, Bensimon D, Croquette V. Structure and mechanics of single biomolecules: Experiment and simulation Journal of Physics Condensed Matter. 14: R383-R414. DOI: 10.1088/0953-8984/14/14/202 |
0.377 |
|
| 2001 |
Giudice E, Várnai P, Lavery R. Energetic and conformational aspects of A:T base-pair opening within the DNA double helix. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 2: 673-7. PMID 23686902 DOI: 10.1002/1439-7641(20011119)2:11<673::Aid-Cphc673>3.0.Co;2-S |
0.426 |
|
| 2001 |
Lafontaine I, Lavery R. High-speed molecular mechanics searches for optimal DNA interaction sites. Combinatorial Chemistry & High Throughput Screening. 4: 707-17. PMID 11812263 DOI: 10.2174/1386207013330698 |
0.435 |
|
| 2001 |
Lebrun A, Lavery R, Weinstein H. Modeling multi-component protein-DNA complexes: the role of bending and dimerization in the complex of p53 dimers with DNA. Protein Engineering. 14: 233-43. PMID 11391015 DOI: 10.1093/Protein/14.4.233 |
0.479 |
|
| 2000 |
Bertucat G, Lavery R, Prévost C. A Mechanism for RecA-Promoted Sequence Homology Recognition and Strand Exchange Between Single-Stranded DNA and Duplex DNA, via Triple-Helical Intermediates. Journal of Biomolecular Structure & Dynamics. 17: 147-53. PMID 22607418 DOI: 10.1080/07391102.2000.10506615 |
0.499 |
|
| 2000 |
Lafontaine I, Lavery R. ADAPT: a molecular mechanics approach for studying the structural properties of long DNA sequences. Biopolymers. 56: 292-310. PMID 11754342 DOI: 10.1002/1097-0282(2000)56:4<292::Aid-Bip10028>3.0.Co;2-9 |
0.492 |
|
| 2000 |
Lafontaine I, Lavery R. Optimization of nucleic acid sequences Biophysical Journal. 79: 680-685. PMID 10920002 DOI: 10.1016/S0006-3495(00)76326-0 |
0.431 |
|
| 2000 |
Ayadi L, Coulombeau C, Lavery R. The impact of abasic sites on DNA flexibility Journal of Biomolecular Structure and Dynamics. 17: 645-653. PMID 10698102 DOI: 10.1080/07391102.2000.10506555 |
0.466 |
|
| 2000 |
Bertucat G, Lavery R, Prévost C. A mechanism for RecA-promoted sequence homology recognition and strand exchange between single-stranded DNA and duplex DNA, via triple-helical intermediates Journal of Biomolecular Structure and Dynamics. 17: 147-153. DOI: 10.1080/07391102.2000.10506615 |
0.368 |
|
| 2000 |
Rohs R, Sklenar H, Lavery R, Röder B. Methylene blue binding to DNA with alternating GC base sequence: A modeling study Journal of the American Chemical Society. 122: 2860-2866. DOI: 10.1021/ja992966k |
0.336 |
|
| 1999 |
Lavery R, Lebrun A. Modelling DNA stretching for physics and biology Genetica. 106: 75-84. PMID 10710712 DOI: 10.1023/A:1003776827836 |
0.496 |
|
| 1999 |
Ayadi L, Coulombeau C, Lavery R. Abasic sites in duplex DNA: Molecular modeling of sequence-dependent effects on conformation Biophysical Journal. 77: 3218-3226. PMID 10585943 DOI: 10.1016/S0006-3495(99)77152-3 |
0.482 |
|
| 1999 |
Ayadi L, Jourdan M, Coulombeau C, Garcia J, Lavery R. Experimental and theoretical studies of the conformational perturbations induced by an abasic site Journal of Biomolecular Structure and Dynamics. 17: 245-257. PMID 10563574 DOI: 10.1080/07391102.1999.10508357 |
0.424 |
|
| 1999 |
Bruant N, Flatters D, Lavery R, Genest D. From atomic to mesoscopic descriptions of the internal dynamics of DNA Biophysical Journal. 77: 2366-2376. PMID 10545340 DOI: 10.1016/S0006-3495(99)77074-8 |
0.44 |
|
| 1999 |
Bertucat G, Lavery R, Prévost C. A molecular model for RecA-promoted strand exchange via parallel triple- stranded helices Biophysical Journal. 77: 1562-1576. PMID 10465767 DOI: 10.1016/S0006-3495(99)77004-9 |
0.485 |
|
| 1999 |
Lafontaine I, Lavery R. Collective variable modelling of nucleic acids Current Opinion in Structural Biology. 9: 170-176. PMID 10322207 DOI: 10.1016/S0959-440X(99)80024-4 |
0.335 |
|
| 1999 |
Rohs R, Etchebest C, Lavery R. Unraveling proteins: A molecular mechanics study Biophysical Journal. 76: 2760-2768. PMID 10233091 DOI: 10.1016/S0006-3495(99)77429-1 |
0.326 |
|
| 1999 |
Lebrun A, Lavery R. Modeling DNA deformations induced by minor groove binding proteins Biopolymers. 49: 341-353. PMID 10101970 DOI: 10.1002/(Sici)1097-0282(19990415)49:5<341::Aid-Bip1>3.0.Co;2-C |
0.465 |
|
| 1999 |
Zakrzewska K, Lavery R. Chapter 12 Modelling protein-DNA interactions Theoretical and Computational Chemistry. 8: 441-483. DOI: 10.1016/S1380-7323(99)80087-9 |
0.303 |
|
| 1999 |
Strick T, Allemand JF, Bensimon D, Lavery R, Croquette V. Phase coexistence in a single DNA molecule Physica a: Statistical Mechanics and Its Applications. 263: 392-404. DOI: 10.1016/S0378-4371(98)00540-8 |
0.412 |
|
| 1998 |
Lebrun A, Lavery R. Modeling the mechanics of a DNA oligomer Journal of Biomolecular Structure and Dynamics. 16: 593-604. PMID 10052616 DOI: 10.1080/07391102.1998.10508272 |
0.475 |
|
| 1998 |
Bertucat G, Lavery R, Prévost C. A model for parallel triple helix formation by RecA: Single-strand association with a homologous duplex via the minor groove Journal of Biomolecular Structure and Dynamics. 16: 535-546. PMID 10052612 DOI: 10.1080/07391102.1998.10508268 |
0.484 |
|
| 1998 |
Allemand JF, Bensimon D, Lavery R, Croquette V. Stretched and overwound DNA forms a Pauling-like structure with exposed bases Proceedings of the National Academy of Sciences of the United States of America. 95: 14152-14157. PMID 9826669 DOI: 10.1073/Pnas.95.24.14152 |
0.48 |
|
| 1998 |
Flatters D, Lavery R. Sequence-dependent dynamics of TATA-box binding sites Biophysical Journal. 75: 372-381. PMID 9649394 DOI: 10.1016/S0006-3495(98)77521-6 |
0.42 |
|
| 1997 |
Lebrun A, Lavery R. Unusual DNA conformations Current Opinion in Structural Biology. 7: 348-354. PMID 9204276 DOI: 10.1016/S0959-440X(97)80050-4 |
0.46 |
|
| 1997 |
Flatters D, Young M, Beveridge DL, Lavery R. Conformational properties of the TATA-box binding sequence of DNA. Journal of Biomolecular Structure & Dynamics. 14: 757-65. PMID 9195344 DOI: 10.1080/07391102.1997.10508178 |
0.502 |
|
| 1997 |
Prévost C, Boudvillain M, Beudaert P, Leng M, Lavery R, Vovelle F. Distortions of the DNA double helix induced by 1,3-trans- diamminedichloroplatinum(II)-intrastrand cross-link: An internal coordinate molecular modeling study Journal of Biomolecular Structure and Dynamics. 14: 703-714. PMID 9195339 DOI: 10.1080/07391102.1997.10508173 |
0.405 |
|
| 1997 |
Lebrun A, Shakked Z, Lavery R. Local DNA stretching mimics the distortion caused by the TATA box-binding protein Proceedings of the National Academy of Sciences of the United States of America. 94: 2993-2998. PMID 9096334 DOI: 10.1073/Pnas.94.7.2993 |
0.49 |
|
| 1997 |
Bernet J, Zakrzewska K, Lavery R. Modelling base pair opening: The role of helical twist Journal of Molecular Structure: Theochem. 398: 473-482. DOI: 10.1016/S0166-1280(96)04974-3 |
0.452 |
|
| 1997 |
Gabb HA, Prévost C, Bertucat G, Robert CH, Lavery R. Collective-variable Monte Carlo simulation of DNA Journal of Computational Chemistry. 18: 2001-2011. DOI: 10.1002/(Sici)1096-987X(199712)18:16<2001::Aid-Jcc5>3.0.Co;2-P |
0.37 |
|
| 1997 |
Flatters D, Zakrzewska K, Lavery R. Internal coordinate modeling of DNA: Force field comparisons Journal of Computational Chemistry. 18: 1043-1055. DOI: 10.1002/(Sici)1096-987X(199706)18:8<1043::Aid-Jcc8>3.0.Co;2-T |
0.385 |
|
| 1996 |
Hartmann B, Lavery R. DNA structural forms Quarterly Reviews of Biophysics. 29: 309-368. PMID 9080547 DOI: 10.1017/S0033583500005874 |
0.484 |
|
| 1996 |
Lebrun A, Lavery R. Modelling extreme stretching of DNA Nucleic Acids Research. 24: 2260-2267. PMID 8710494 DOI: 10.1093/Nar/24.12.2260 |
0.471 |
|
| 1996 |
Sanghani SR, Zakrzewska K, Harvey SC, Lavery R. Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature. Nucleic Acids Research. 24: 1632-7. PMID 8649979 DOI: 10.1093/Nar/24.9.1632 |
0.376 |
|
| 1996 |
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy JL, Chatenay D, Caron F. DNA: an extensible molecule. Science (New York, N.Y.). 271: 792-4. PMID 8628993 DOI: 10.1126/Science.271.5250.792 |
0.453 |
|
| 1995 |
Lebrun A, Lavery R. Modeling a strand exchange tetraplex conformation Journal of Biomolecular Structure and Dynamics. 13: 459-464. PMID 8825725 DOI: 10.1080/07391102.1995.10508855 |
0.489 |
|
| 1995 |
Lavery R, Zakrzewska K, Sklenar H. JUMNA (junction minimisation of nucleic acids) Computer Physics Communications. 91: 135-158. DOI: 10.1016/0010-4655(95)00046-I |
0.317 |
|
| 1995 |
Gabb HA, Lavery R, Prévost C. Efficient conformational space sampling for nucleosides using internal coordinate Monte Carlo simulations and a modified furanose description Journal of Computational Chemistry. 16: 667-680. DOI: 10.1002/Jcc.540160603 |
0.32 |
|
| 1994 |
Stofer E, Lavery R. Measuring the geometry of DNA grooves Biopolymers. 34: 337-346. PMID 8161709 DOI: 10.1002/Bip.360340305 |
0.443 |
|
| 1994 |
Tuffery P, Etchebest C, Popot J-, Lavery R. Prediction of the positioning of the seven transmembrane α-helices of bacteriorhodopsin: A molecular simulation study Journal of Molecular Biology. 236: 1105-1122. PMID 8120890 DOI: 10.1016/0022-2836(94)90015-9 |
0.358 |
|
| 1994 |
Lavery R, Hartmann B. Modelling DNA conformational mechanics Biophysical Chemistry. 50: 33-45. PMID 8011939 DOI: 10.1016/0301-4622(94)85018-6 |
0.495 |
|
| 1994 |
Sanghani SR, Lavery R. Theoretical studies of DNA-RNA hybrid conformations. Nucleic Acids Research. 22: 1444-9. PMID 7514787 DOI: 10.1093/Nar/22.8.1444 |
0.357 |
|
| 1993 |
Prévost C, Louise-May S, Ravishanker G, Lavery R, Beveridge DL. Persistence analysis of the static and dynamical helix deformations of DNA oligonucleotides: application to the crystal structure and molecular dynamics simulation of d(CGCGAATTCGCG)2. Biopolymers. 33: 335-50. PMID 8461448 DOI: 10.1016/0263-7855(92)80019-A |
0.4 |
|
| 1993 |
Tufféry P, Lavery R. Packing and recognition of protein structural elements: A new approach applied to the 4‐helix bundle of myohemerythrin Proteins. 15: 413-425. PMID 8460111 DOI: 10.1002/Prot.340150408 |
0.36 |
|
| 1993 |
Ouali M, Letellier R, Adnet F, Liquier J, Sun JS, Lavery R, Taillandier E. A possible family of B-like triple helix structures: Comparison with the Arnott A-like triple helix Biochemistry. 32: 2098-2103. PMID 8448168 DOI: 10.1021/Bi00059A030 |
0.342 |
|
| 1993 |
Hartmann B, Piazzola D, Lavery R. BI - BII transitions in B-DNA Nucleic Acids Research. 21: 561-568. PMID 8441668 DOI: 10.1093/Nar/21.3.561 |
0.464 |
|
| 1993 |
El-Kettani MAE, Zakrzewska K, Durup J, Lavery R. An analysis of the conformational paths of citrate synthase. Proteins. 16: 393-407. PMID 8356034 DOI: 10.1002/Prot.340160408 |
0.319 |
|
| 1993 |
Poltev VI, Smirnov SL, Issarafutdinova OV, Lavery R. Conformations of DNA duplexes containing 8-oxoguanine. Journal of Biomolecular Structure & Dynamics. 11: 293-301. PMID 8286057 DOI: 10.1080/07391102.1993.10508727 |
0.335 |
|
| 1993 |
Chomilier J, Sun JS, Collier DA, Garestier T, Hélène C, Lavery R. A computational and experimental study of the bending induced at a double-triple helix junction. Biophysical Chemistry. 45: 143-52. PMID 1286149 DOI: 10.1016/0301-4622(92)87006-5 |
0.493 |
|
| 1993 |
Zakrzewska K, Poltev VI, Oguey C, Lavery R. Symmetry reduction in homopolymeric DNA: implications for DNA fine structure Journal of Molecular Structure-Theochem. 286: 219-229. DOI: 10.1016/0166-1280(93)87165-A |
0.497 |
|
| 1993 |
Kozelka J, Savinelli R, Berthier G, Flament JP, Lavery R. Force field for platinum binding to adenine Journal of Computational Chemistry. 14: 45-53. DOI: 10.1002/Jcc.540140109 |
0.6 |
|
| 1992 |
Sun JS, Lavery R, Chomilier J, Zakrzewska K, Montenay-Garestier T, Hélène C. Theoretical study of ethidium intercalation in triple-stranded DNA and at triplex-duplex junctions. Journal of Biomolecular Structure & Dynamics. 9: 425-436. PMID 1815636 DOI: 10.1080/07391102.1991.10507926 |
0.475 |
|
| 1992 |
Poncin M, Hartmann B, Lavery R. Conformational sub-states in B-DNA. Journal of Molecular Biology. 226: 775-794. PMID 1507226 DOI: 10.1016/0022-2836(92)90632-T |
0.437 |
|
| 1992 |
Poncin M, Piazzola D, Lavery R. DNA flexibility as a function of allomorphic conformation and of base sequence. Biopolymers. 32: 1077-1103. PMID 1420973 DOI: 10.1002/Bip.360320817 |
0.504 |
|
| 1992 |
Lavery R, Zakrzewska K, Sun JS, Harvey SC. A comprehensive classification of nucleic acid structural families based on strand direction and base pairing. Nucleic Acids Research. 20: 5011-6. PMID 1383936 DOI: 10.1093/Nar/20.19.5011 |
0.396 |
|
| 1992 |
Mauffret O, Hartmann B, Convert O, Lavery R, Fermandjian S. The fine structure of two DNA dodecamers containing the cAMP responsive element sequence and its inverse: Nuclear magnetic resonance and molecular simulation studies Journal of Molecular Biology. 227: 852-875. PMID 1328653 DOI: 10.1016/0022-2836(92)90227-B |
0.405 |
|
| 1992 |
Sun J, Lavery R. Strand orientation of [α]‐oligodeoxynucleotides in triple helix structures: Dependence on nucleotide sequence Journal of Molecular Recognition. 5: 93-98. PMID 1298305 DOI: 10.1002/Jmr.300050304 |
0.387 |
|
| 1991 |
Tuffery P, Etchebest C, Hazout S, Lavery R. A new approach to the rapid determination of protein side chain conformations. Journal of Biomolecular Structure & Dynamics. 8: 1267-1289. PMID 1892586 DOI: 10.1080/07391102.1991.10507882 |
0.331 |
|
| 1991 |
Sun JS, Mergny JL, Garestier TM, Lavery R, Hélène C. Triple helix structures: Sequence dependence, flexibility and mismatch effects Journal of Biomolecular Structure and Dynamics. 9: 411-424. PMID 1815635 DOI: 10.1080/07391102.1991.10507925 |
0.438 |
|
| 1991 |
Briki F, Ramstein J, Lavery R, Genest D. Evidence for the stochastic nature of base pair opening in DNA: a Brownian dynamics simulation Journal of the American Chemical Society. 113: 2490-2493. DOI: 10.1021/Ja00007A023 |
0.421 |
|
| 1990 |
Ramstein J, Lavery R. Base pair opening pathways in B-DNA. Journal of Biomolecular Structure & Dynamics. 7: 915-933. PMID 2310523 DOI: 10.1080/07391102.1990.10508532 |
0.47 |
|
| 1990 |
Swaminathan S, Ravishanker G, Beveridge DL, Lavery R, Etchebest C, Sklenar H. Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI. Proteins. 8: 179-93. PMID 2235996 DOI: 10.1002/Prot.340080208 |
0.364 |
|
| 1989 |
Hartmann B, Malfoy B, Lavery R. Theoretical prediction of base sequence effects in DNA. Experimental reactivity of Z-DNA and B-Z transition enthalpies. Journal of Molecular Biology. 207: 433-44. PMID 2754731 DOI: 10.1016/0022-2836(89)90265-9 |
0.389 |
|
| 1989 |
Ravishanker G, Swaminathan S, Beveridge DL, Lavery R, Sklenar H. Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows. Journal of Biomolecular Structure & Dynamics. 6: 669-99. PMID 2619934 DOI: 10.1080/07391102.1989.10507729 |
0.465 |
|
| 1989 |
Lavery R, Sklenar H. Defining the structure of irregular nucleic acids: conventions and principles. Journal of Biomolecular Structure & Dynamics. 6: 655-667. PMID 2619933 DOI: 10.1080/07391102.1989.10507728 |
0.374 |
|
| 1989 |
Hartmann B, Lavery R. The conformation and stability of ribonucleic acids: Modeling base sequence effects in double stranded helices Journal of Biomolecular Structure and Dynamics. 7: 363-380. PMID 2604910 DOI: 10.1080/07391102.1989.10507778 |
0.389 |
|
| 1989 |
Sun JS, François JC, Lavery R, Saison-Behmoaras T, Montenay-Garestier T, Thuong NT, Hélène C. Sequence-targeted cleavage of nucleic acids by oligo-alpha-thymidylate-phenanthroline conjugates: parallel and antiparallel double helices are formed with DNA and RNA, respectively. Biochemistry. 27: 6039-45. PMID 2461219 DOI: 10.1021/Bi00416A032 |
0.341 |
|
| 1988 |
Harvey SC, Luo J, Lavery R. DNA stem-loop structures in oligopurine-oligopyrimidine triplexes. Nucleic Acids Research. 16: 11795-809. PMID 3211749 DOI: 10.1093/Nar/16.24.11795 |
0.37 |
|
| 1988 |
Ramstein J, Lavery R. Energetic coupling between DNA bending and base pair opening. Proceedings of the National Academy of Sciences of the United States of America. 85: 7231-5. PMID 3174629 DOI: 10.1073/Pnas.85.19.7231 |
0.484 |
|
| 1988 |
Lavery R, Sklenar H. The Definition of Generalized Helicoidal Parameters and of Axis Curvature for Irregular Nucleic Acids Journal of Biomolecular Structure & Dynamics. 6: 63-91. PMID 2482765 DOI: 10.1080/07391102.1988.10506483 |
0.32 |
|
| 1987 |
Zakrzewska K, Lavery R, Pullman B. A theoretical study of the sequence specificity in binding of lexitropsins to B-DNA. Journal of Biomolecular Structure & Dynamics. 4: 833-43. PMID 2855924 DOI: 10.1080/07391102.1987.10507681 |
0.635 |
|
| 1986 |
Zakrzewska K, Lavery R, Pullman B. Theoretical studies on the interaction of proteins and nucleic acid. II. The binding of alpha-helix to B-DNA. Biophysical Chemistry. 25: 201-13. PMID 3814753 DOI: 10.1016/0301-4622(86)87011-9 |
0.611 |
|
| 1986 |
Lavery R, Zakrzewska K, Pullman B. Binding of non-intercalating antibiotics to B-DNA: a theoretical study taking into account nucleic acid flexibility. Journal of Biomolecular Structure & Dynamics. 3: 1155-70. PMID 3271428 DOI: 10.1080/07391102.1986.10508492 |
0.631 |
|
| 1986 |
Lavery R, Sklenar H, Zakrzewska K, Pullman B. The flexibility of the nucleic acids: (II). The calculation of internal energy and applications to mononucleotide repeat DNA. Journal of Biomolecular Structure & Dynamics. 3: 989-1014. PMID 3271422 DOI: 10.1080/07391102.1986.10508478 |
0.613 |
|
| 1986 |
Sklenar H, Lavery R, Pullman B. The flexibility of the nucleic acids: (I). "SIR", a novel approach to the variation of polymer geometry in constrained systems. Journal of Biomolecular Structure & Dynamics. 3: 967-87. PMID 3271421 DOI: 10.1080/07391102.1986.10508477 |
0.515 |
|
| 1986 |
Lavery R, Sklenar H, Pullman B. The flexibility of the nucleic acids: (III). The interaction of an aliphatic diamine, putrescine, with flexible B-DNA. Journal of Biomolecular Structure & Dynamics. 3: 1015-31. PMID 3271411 DOI: 10.1080/07391102.1986.10508479 |
0.642 |
|
| 1985 |
Lavery R, Pullman B. The dependence of the surface electrostatic potential of B-DNA on environmental factors. Journal of Biomolecular Structure & Dynamics. 2: 1021-32. PMID 3916934 DOI: 10.1080/07391102.1985.10507618 |
0.575 |
|
| 1984 |
Zakrzewska K, Lavery R, Pullman B. The solvation contribution to the binding energy of DNA with non-intercalating antibiotics. Nucleic Acids Research. 12: 6559-74. PMID 6089121 DOI: 10.1093/Nar/12.16.6559 |
0.589 |
|
| 1984 |
Furois‐Corbin S, Pullman B, Lavery R. Effect of nucleic acid flexibility upon ASIF (accessible surface integrated field). Possible significance for biochemical reactivity exemplified by aflatoxin B1 binding International Journal of Quantum Chemistry. 26: 273-286. DOI: 10.1002/Qua.560260729 |
0.63 |
|
| 1984 |
Lavery R, Zakrzewska K, Pullman A. Optimized monopole expansions for the representation of the electrostatic properties of the nucleic acids Journal of Computational Chemistry. 5: 363-373. DOI: 10.1002/Jcc.540050414 |
0.379 |
|
| 1983 |
Lavery R, Pullman A, Pullman B. The electrostatic field of the component units of DNA and its relationship to hydration. Biophysical Chemistry. 17: 75-86. PMID 6824764 DOI: 10.1016/0301-4622(83)87016-1 |
0.587 |
|
| 1983 |
Zakrzewska K, Lavery R, Pullman B. Theoretical studies of the selective binding to DNA of two non-intercalating ligands: netropsin and SN 18071. Nucleic Acids Research. 11: 8825-39. PMID 6324104 DOI: 10.1093/Nar/11.24.8825 |
0.62 |
|
| 1983 |
Pullman A, Pullman B, Lavery R. Molecular electrostatic potential versus field. Significance for DNA and its constituents Journal of Molecular Structure-Theochem. 93: 85-91. DOI: 10.1016/0022-2860(83)90389-7 |
0.439 |
|
| 1983 |
Corbin S, Lavery R, Pullman B. Molecular electrotatic potential of a triple stranded helix: Poly(dT)·poly(dA)·poly(dT) International Journal of Quantum Chemistry. 23: 1451-1461. DOI: 10.1002/Qua.560230427 |
0.42 |
|
| 1982 |
Lavery R, Pullman B. The electrostatic field of DNA: the role of the nucleic acid conformation. Nucleic Acids Research. 10: 4383-95. PMID 7122241 DOI: 10.1093/Nar/10.14.4383 |
0.639 |
|
| 1982 |
Lavery R, Pullman B, Zakrzewska K. Intrinsic electrostatic properties and base sequence effects in the structure of oligonucleotides. Biophysical Chemistry. 15: 343-51. PMID 7115887 DOI: 10.1016/0301-4622(82)80017-3 |
0.547 |
|
| 1982 |
Lavery R, Pullman B. The effects of countercation screening on the electrostatic potential of DNA. The rôle of the nucleic acid conformation. Febs Letters. 142: 271-4. PMID 7106290 DOI: 10.1016/0014-5793(82)80150-6 |
0.572 |
|
| 1982 |
Pullman B, Lavery R, Pullman A. Two aspects of DNA polymorphism and microheterogeneity: molecular electrostatic potential and steric accessibility. European Journal of Biochemistry / Febs. 124: 229-38. PMID 7094914 DOI: 10.1111/J.1432-1033.1982.Tb06582.X |
0.649 |
|
| 1982 |
Corbin S, Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of double-helical A-RNA. Biochimica Et Biophysica Acta. 698: 86-92. PMID 6180767 DOI: 10.1016/0167-4781(82)90188-9 |
0.57 |
|
| 1982 |
Lavery R, Etchebest C, Pullman A. Calculation of the molecular electrostatic potential from a multipole expansion based on localized orbitals Chemical Physics Letters. 85: 266-270. DOI: 10.1016/0009-2614(82)80290-X |
0.314 |
|
| 1982 |
Lavery R, Pullman A, Pullman B. The electrostatic field of B-DNA Theoretica Chimica Acta. 62: 93-106. DOI: 10.1007/Bf00581476 |
0.591 |
|
| 1982 |
Etchebest C, Lavery R, Pullman A. The calculation of molecular electrostatic potential from a multipole expansion based on localized orbitals and developed at their centroids: Accuracy and applicability for macromolecular computations Theoretica Chimica Acta. 62: 17-28. DOI: 10.1007/Bf00551050 |
0.352 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of poly (dI.dC). Comparison with poly (dG.dC). Nucleic Acids Research. 9: 7041-51. PMID 7335499 DOI: 10.1093/Nar/9.24.7041 |
0.588 |
|
| 1981 |
Lavery R, Pullman B, Corbin S. The molecular electrostatic potential and steric accessibility of poly (dA-dT). poly (dA-dT) in various conformations: B-DNA, D-DNA and 'alternating-B' DNA. Nucleic Acids Research. 9: 6539-52. PMID 7322922 DOI: 10.1093/Nar/9.23.6539 |
0.641 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of A-DNA. Nucleic Acids Research. 9: 4677-88. PMID 7301586 DOI: 10.1007/Bf00549607 |
0.65 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential, steric accessibility and hydration of Dickerson's B-DNA dodecamer d(CpGpCpGpApApTpTpCpGpCpG). Nucleic Acids Research. 9: 3765-77. PMID 7279672 DOI: 10.1093/Nar/9.15.3765 |
0.643 |
|
| 1981 |
Lavery R, Corbin S, Pullman A. The electrostatic molecular potential of tRNAPhe. V. The influence of counterion binding on the potential and the steric accessibility International Journal of Quantum Chemistry. 20: 171-183. DOI: 10.1002/Qua.560200715 |
0.308 |
|
| 1981 |
Zakrzewska K, Lavery R, Pullman B. The electrostatic potential of a model phospholipid monolayer International Journal of Quantum Chemistry. 20: 161-170. DOI: 10.1002/Qua.560200714 |
0.54 |
|
| 1981 |
Lavery R, Pullman B. Molecular electrostatic potential on the surface envelopes of macromolecules: B-DNA International Journal of Quantum Chemistry. 20: 259-272. DOI: 10.1002/Qua.560200123 |
0.464 |
|
| 1981 |
Lavery R, Pullman A, Pullman B. Steric accessibility of reactive centers in B-DNA International Journal of Quantum Chemistry. 20: 49-62. DOI: 10.1002/Qua.560200106 |
0.464 |
|
| 1980 |
Zakrzewska K, Lavery R, Pullman A, Pullman B. The electrostatic potential and steric accessibility of reactive sites within Z-DNA. Nucleic Acids Research. 8: 3917-32. PMID 7443517 DOI: 10.1093/Nar/8.17.3917 |
0.64 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNAPhe. (I). The potential due to the phosphate backbone. Nucleic Acids Research. 8: 1061-79. PMID 7003554 DOI: 10.1093/Nar/8.5.1061 |
0.553 |
|
| 1980 |
Lavery R, Pullman A, Pullman B, de Oliveira M. The electrostatic molecular potential of tRNAPhe. IV. The potentials and steric accessibilities of sites associated with the bases. Nucleic Acids Research. 8: 5095-111. PMID 7003548 DOI: 10.1093/Nar/8.21.5095 |
0.557 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNA. (I). The potential due to the phosphate backbone Nucleic Acids Research. 8: 1061-1079. DOI: 10.1093/nar/8.5.1061 |
0.487 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNAPhe. III. The molecular potential and the steric acessibility associated with the phosphate groups Theoretica Chimica Acta. 57: 233-243. DOI: 10.1007/Bf00554104 |
0.552 |
|
| 1980 |
Cauchy D, Lavery R, Pullman B. The effect of screening the electrostatic potentials of reactive sites within B-DNA by metal cations Theoretica Chimica Acta. 57: 323-327. DOI: 10.1007/Bf00552744 |
0.596 |
|
| 1980 |
Lavery R, Oliveira MD, Pullman B. The electrostatic potential of yeast tRNAPhe. II. The potentials of the phosphate groups in their various conformational states Journal of Computational Chemistry. 1: 301-306. DOI: 10.1002/Jcc.540010314 |
0.547 |
|
| 1979 |
Lavery R, Pullman B. The molecular electrostatic potential of the B-DNA helix - IV. C8 and amino sites of purines and the binding of carcinogenic acetylaminofluorene to DNA Theoretica Chimica Acta. 53: 175-181. DOI: 10.1007/Bf00548830 |
0.647 |
|
| 1979 |
Lavery R, Pullman B. Theoretical model study of the reactivity of benzo(a)pyrene diol epoxide with the amino groups of the nucleic acid bases International Journal of Quantum Chemistry. 16: 175-188. DOI: 10.1002/Qua.560160119 |
0.615 |
|
| 1979 |
Lavery R, Pullman B. Model quantum chemical studies of the electronic structure and aspects of reactivity of diol epoxides of aromatic hydrocarbons International Journal of Quantum Chemistry. 15: 271-280. DOI: 10.1002/Qua.560150303 |
0.525 |
|
| 1978 |
Lavery R, Pullman A, Pullman B. On the relative acidity and basicity of the amino groups of the nucleic acid bases Theoretica Chimica Acta. 50: 67-73. DOI: 10.1007/Bf00552495 |
0.538 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2009 |
Durrieu MP, Bond PJ, Sansom MS, Lavery R, Baaden M. Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1548-52. PMID 19479895 DOI: 10.1002/Cphc.200900216 |
0.297 |
|
| 2000 |
Lavery R. Perspective on “Stereochemistry of polypeptide chain conformations” Theoretical Chemistry Accounts. 103: 257-258. DOI: 10.1007/978-3-662-10421-7_27 |
0.297 |
|
| 2006 |
Várnai P, Lavery R. Modeling DNA deformation Computational Studies of Rna and Dna. 169-210. DOI: 10.1007/978-1-4020-4851-3_7 |
0.293 |
|
| 2007 |
Sacquin-Mora S, Sebban P, Derrien V, Frick B, Lavery R, Alba-Simionesco C. Probing the flexibility of the bacterial reaction center: the wild-type protein is more rigid than two site-specific mutants. Biochemistry. 46: 14960-8. PMID 18052234 DOI: 10.1021/Bi7004416 |
0.285 |
|
| 2014 |
Karplus M, Lavery R. Significance of Molecular Dynamics Simulations for Life Sciences Israel Journal of Chemistry. 54: 1042-1051. DOI: 10.1002/Ijch.201400074 |
0.279 |
|
| 2005 |
Cailliez F, Lavery R. Cadherin mechanics and complexation: the importance of calcium binding. Biophysical Journal. 89: 3895-903. PMID 16183887 DOI: 10.1529/Biophysj.105.067322 |
0.277 |
|
| 1992 |
Tuffery P, Etchebest C, Hazout S, Lavery R. A new approach to the rapid determination of protein side-chain conformations. implications for the analysis of side-chain connectivity Journal of Molecular Graphics. 10: 35-36. DOI: 10.1016/0263-7855(92)80009-3 |
0.277 |
|
| 2015 |
Frezza E, Lavery R. Internal Normal Mode Analysis (iNMA) Applied to Protein Conformational Flexibility. Journal of Chemical Theory and Computation. 11: 5503-12. PMID 26574338 DOI: 10.1021/Acs.Jctc.5B00724 |
0.276 |
|
| 1989 |
Sklenar H, Etchebest C, Lavery R. Describing Protein Structure: A General Algorithm Yielding Complete Helicoidal Parameters and a Unique Overall Axis Proteins. 6: 46-60. PMID 2608659 DOI: 10.1002/Prot.340060105 |
0.275 |
|
| 1984 |
Lavery R, Pullman A. A new theoretical index of biochemical reactivity combining steric and electrostatic factors. An application to yeast tRNAPhe. Biophysical Chemistry. 19: 171-81. PMID 6372881 DOI: 10.1016/0301-4622(84)85017-6 |
0.273 |
|
| 1993 |
Tufféry P, Etchebest C, Hazout S, Lavery R. A critical comparison of search algorithms applied to the optimization of protein side-chain conformations Journal of Computational Chemistry. 14: 790-798. DOI: 10.1002/Jcc.540140705 |
0.268 |
|
| 2005 |
Deremble C, Lavery R. Macromolecular recognition. Current Opinion in Structural Biology. 15: 171-5. PMID 15837175 DOI: 10.1016/j.sbi.2005.01.018 |
0.261 |
|
| 2017 |
Bednar J, Garcia-Saez I, Boopathi R, Cutter AR, Papai G, Reymer A, Syed SH, Lone IN, Tonchev O, Crucifix C, Menoni H, Papin C, Skoufias DA, Kurumizaka H, Lavery R, et al. Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. Molecular Cell. 66: 729. PMID 28575663 DOI: 10.1016/J.Molcel.2017.05.018 |
0.254 |
|
| 2009 |
Sacquin-Mora S, Lavery R. Modeling the mechanical response of proteins to anisotropic deformation. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 115-8. PMID 19006155 DOI: 10.1002/Cphc.200800480 |
0.251 |
|
| 1995 |
Tufféry P, Etchebest C, Lavery R. Modelling of transmembrane α-helix bundles Molecular Engineering. 5: 1-9. DOI: 10.1007/Bf00999574 |
0.244 |
|
| 1993 |
Tufféry P, Popot J-, Lavery R. Modeling bundles of transmembrane α-helices: A test study on bacteriorhodopsin Journal of Molecular Graphics. 11: 67. DOI: 10.1016/0263-7855(93)85037-Q |
0.213 |
|
| 2007 |
Lavery R, Sharp KA. Theory and simulation Current Opinion in Structural Biology. 17: 147-148. DOI: 10.1016/J.Sbi.2007.03.007 |
0.211 |
|
| 1999 |
Manoj N, Srinivas VR, Surolia A, Vijayan M, Suguna K, Ravishankar R, Schwarzenbacher R, Zeth K, Diederichs, Kostner GM, Gries A, Laggner P, Prassl R, Madhusudan, Akamine P, ... ... Lavery R, ... ... Lavery R, et al. Contributory presentations/posters Journal of Biosciences. 24: 33-198. DOI: 10.1007/Bf02989373 |
0.209 |
|
| 2006 |
Yun MR, Lavery R, Mousseau N, Zakrzewska K, Derreumaux P. ARTIST: an activated method in internal coordinate space for sampling protein energy landscapes. Proteins. 63: 967-75. PMID 16523485 DOI: 10.1002/Prot.20938 |
0.189 |
|
| 2012 |
Ceres N, Pasi M, Lavery R. A protein solvation model based on residue burial Journal of Chemical Theory and Computation. 8: 2141-2144. DOI: 10.1021/ct3001552 |
0.163 |
|
| 1996 |
Zakrzewska K, Madami A, Lavery R. Poisson-Boltzmann calculations for nucleic acids and nucleic acids complexes Chemical Physics. 204: 263-269. DOI: 10.1016/0301-0104(95)00345-2 |
0.153 |
|
| 1999 |
Stofer E, Chipot C, Lavery R. Free energy calculations of watson-crick base pairing in aqueous solution Journal of the American Chemical Society. 121: 9503-9508. DOI: 10.1021/ja991092z |
0.146 |
|
| 2000 |
Lavery R. Perspective on "stereochemistry of polypeptide chain conformations" Theoretical Chemistry Accounts. 103: 257-258. |
0.129 |
|
| 2013 |
Pasi M, Lavery R, Ceres N. PaLaCe: A coarse-grain protein model for studying mechanical properties Journal of Chemical Theory and Computation. 9: 785-793. DOI: 10.1021/ct3007925 |
0.123 |
|
| 1999 |
Allemand JF, Bensimon D, Croquette V, Lavery R, Maier B, Strick T. The 'molecular hocus-pocus' | Le jokari moleculaire Biofutur. 26-27. |
0.11 |
|
| 2012 |
Ceres N, Lavery R. Coarse-grain protein models Rsc Biomolecular Sciences. 1: 219-248. |
0.088 |
|
| 2014 |
Kunac A, Sifri ZC, Mohr AM, Horng H, Lavery RF, Livingston DH. Bacteremia and ventilator-associated pneumonia: a marker for contemporaneous extra-pulmonic infection. Surgical Infections. 15: 77-83. PMID 24192306 DOI: 10.1089/sur.2012.030 |
0.061 |
|
| 2004 |
Lavery RJ, Remijan A, Charmandaris V, Hayes RD, Ring AA. Probing the evolution of the galaxy interaction/merger rate using collisional ring galaxies Astrophysical Journal. 612: 679-689. DOI: 10.1086/422420 |
0.056 |
|
| 2000 |
Lavery RF, Addis MD, Doran JV, Corrice MA, Tortella BJ, Livingston DH. Taking care of the 'good guys:' A trauma center-based model of medical support for tactical law enforcement Journal of Trauma - Injury, Infection and Critical Care. 48: 125-129. PMID 10647577 |
0.053 |
|
| 2006 |
Salo D, Tuel M, Lavery RF, Reischel U, Lebowitz J, Moore T. A randomized, clinical trial comparing the efficacy of continuous nebulized albuterol (15 mg) versus continuous nebulized albuterol (15 mg) plus ipratropium bromide (2 mg) for the treatment of acute asthma. The Journal of Emergency Medicine. 31: 371-6. PMID 17046476 DOI: 10.1016/j.jemermed.2006.05.025 |
0.049 |
|
| 2001 |
Crain J, Meeker SP, Hossack WJ, Lavery RJ, Poon WCK. Mechanical properties of thermo-reversible colloid liquid crystal composites Molecular Crystals and Liquid Crystals Science and Technology Section a: Molecular Crystals and Liquid Crystals. 364: 951-956. |
0.049 |
|
| 2014 |
Anjaria DJ, Ullmann TM, Lavery R, Livingston DH. Management of colonic injuries in the setting of damage-control laparotomy: one shot to get it right. The Journal of Trauma and Acute Care Surgery. 76: 594-8; discussion 59. PMID 24553524 DOI: 10.1097/TA.0000000000000132 |
0.047 |
|
| 2005 |
Lavery R, Houghton JA, Nolan A, Glennon M, Egan D, Maher M. CAG repeat length in an infertile male population of Irish origin. Genetica. 123: 295-302. PMID 15954500 DOI: 10.1007/s10709-004-5091-8 |
0.046 |
|
| 2015 |
Gore A, Madbak F, Ho V, Rohani P, Lavery R, Livingston D, Mohr A, Sifri Z. 1130: PROSPECTIVE EVALUATION OF TIME TO LIBERATION FROM MECHANICAL VENTILATION FOLLOWING TRACHEOSTOMY. Critical Care Medicine. 43: 284. PMID 26570791 DOI: 10.1097/01.Ccm.0000474961.49340.B5 |
0.045 |
|
| 2008 |
Krieger E, Leger L, Durrieu MP, Taib N, Bond P, Laguerre M, Lavery R, Sansom MSP, Baaden M. Atomistic modeling of the membrane-embedded synaptic fusion complex: A grand challenge project on the DEISA HPC infrastructure Advances in Parallel Computing. 15: 729-736. |
0.044 |
|
| 2015 |
Ceres N, Lavery R. Improving the treatment of coarse-grain electrostatics: CVCEL Journal of Chemical Physics. 143. DOI: 10.1063/1.4933434 |
0.042 |
|
| 2007 |
Homnick A, Lavery R, Nicastro O, Livingston DH, Hauser CJ. Isolated thoracolumbar transverse process fractures: call physical therapy, not spine. The Journal of Trauma. 63: 1292-5. PMID 18212652 DOI: 10.1097/TA.0b013e31812eed3c |
0.04 |
|
| 1995 |
Lavery RJ, Laveryl RJ. Past reproductive effort affects parental behaviour in a cichlid fish, Cichlasoma nigrofasciatum: a comparison of inexperienced and experienced breeders with normal and experimentally reduced broods Behavioral Ecology and Sociobiology. 36: 193-199. DOI: 10.1007/BF00177796 |
0.04 |
|
| 1998 |
Livingston DH, Lavery RF, Passannante MR, Skurnick JH, Fabian TC, Fry DE, Malangoni MA. Admission or observation is not necessary after a negative abdominal computed tomographic scan in patients with suspected blunt abdominal trauma: Results of a prospective, multi-institutional trial Journal of Trauma - Injury, Infection and Critical Care. 44: 273-282. PMID 9498497 DOI: 10.1097/00005373-199802000-00005 |
0.039 |
|
| 2006 |
Sifri ZC, Homnick AT, Vaynman A, Lavery R, Liao W, Mohr A, Hauser CJ, Manniker A, Livingston D. A prospective evaluation of the value of repeat cranial computed tomography in patients with minimal head injury and an intracranial bleed. The Journal of Trauma. 61: 862-7. PMID 17033552 DOI: 10.1097/01.Ta.0000224225.54982.90 |
0.039 |
|
| 2010 |
Mohr AM, Lavery RF, Sifri ZC, Anjaria DJ, Koernig R, Deitch EA, Livingston DH. Gender differences in glucose variability after severe trauma. The American Surgeon. 76: 896-902. PMID 20726425 |
0.038 |
|
| 1996 |
Lavery RJ, Seitzer P, Suntzeff NB, Walker AR, Costa GSDA. Distant ring galaxies as evidence for a steeply increasing galaxy interaction rate with redshift Astrophysical Journal. 467: L1-L4. |
0.036 |
|
| 2003 |
Hauser CJ, Visvikis G, Hinrichs C, Eber CD, Cho K, Lavery RF, Livingston DH. Prospective validation of computed tomographic screening of the thoracolumbar spine in trauma. The Journal of Trauma. 55: 228-34; discussion 2. PMID 12913630 DOI: 10.1097/01.TA.0000076622.19246.CF |
0.036 |
|
| 2000 |
Livingston DH, Lavery RF, Passannante MR, Skurnick JH, Baker S, Fabian TC, Fry DE, Malangoni MA. Emergency department discharge of patients with a negative cranial computed tomography scan after minimal head injury Annals of Surgery. 232: 126-132. PMID 10862205 DOI: 10.1097/00000658-200007000-00018 |
0.033 |
|
| 2012 |
Lavery R, Chassot AA, Pauper E, Gregoire EP, Klopfenstein M, de Rooij DG, Mark M, Schedl A, Ghyselinck NB, Chaboissier MC. Testicular differentiation occurs in absence of R-spondin1 and Sox9 in mouse sex reversals. Plos Genetics. 8: e1003170. PMID 23300469 DOI: 10.1371/Journal.Pgen.1003170 |
0.032 |
|
| 2005 |
Murano T, Mohr AM, Lavery RF, Lynch C, Homnick AT, Livingston DH. Civilian craniocerebral gunshot wounds: an update in predicting outcomes. The American Surgeon. 71: 1009-14. PMID 16447469 |
0.032 |
|
| 2004 |
Sheperd RS, Ziccardi VB, Livingston D, Lavery R. Trauma from tire and rim explosions: A retrospective analysis. Journal of Oral and Maxillofacial Surgery : Official Journal of the American Association of Oral and Maxillofacial Surgeons. 62: 36-8. PMID 14699546 DOI: 10.1016/J.Joms.2003.08.007 |
0.032 |
|
| 2004 |
Sifri ZC, Livingston DH, Lavery RF, Homnick AT, Mosenthal AC, Mohr AM, Hauser CJ. Value of repeat cranial computed axial tomography scanning in patients with minimal head injury. American Journal of Surgery. 187: 338-42. PMID 15006561 DOI: 10.1016/j.amjsurg.2003.12.015 |
0.032 |
|
| 2008 |
Chan YF, Lavery R, Fox N, Kwon R, Zinzuwadia S, Massone R, Livingston D. Effect of an educational video on emergency department patient stroke knowledge. The Journal of Emergency Medicine. 34: 215-20. PMID 17976815 DOI: 10.1016/J.Jemermed.2007.04.003 |
0.032 |
|
| 2011 |
Lavery R, Lardenois A, Ranc-Jianmotamedi F, Pauper E, Gregoire EP, Vigier C, Moreilhon C, Primig M, Chaboissier MC. XY Sox9 embryonic loss-of-function mouse mutants show complete sex reversal and produce partially fertile XY oocytes. Developmental Biology. 354: 111-22. PMID 21466799 DOI: 10.1016/J.Ydbio.2011.03.029 |
0.031 |
|
| 2011 |
Livingston DH, Suber I, Snyder D, Clancy SF, Passannante MR, Lavery RF. Annual pediatric pedestrian education does not improve pedestrian behavior. The Journal of Trauma. 71: 1120-4; discussion 1. PMID 21857255 DOI: 10.1097/Ta.0B013E31822Dd03C |
0.031 |
|
| 1995 |
Doran JV, Tortella BJ, Drivet WJ, Lavery RF. Factors influencing successful intubation in the prehospital setting Prehospital and Disaster Medicine : the Official Journal of the National Association of Ems Physicians and the World Association For Emergency and Disaster Medicine in Association With the Acute Care Foundation. 10: 259-264. PMID 10155438 |
0.03 |
|
| 2008 |
Livingston DH, Shogan B, John P, Lavery RF. CT diagnosis of Rib fractures and the prediction of acute respiratory failure. The Journal of Trauma. 64: 905-11. PMID 18404055 DOI: 10.1097/TA.0b013e3181668ad7 |
0.029 |
|
| 2008 |
Mosenthal AC, Murphy PA, Barker LK, Lavery R, Retano A, Livingston DH. Changing the culture around end-of-life care in the trauma intensive care unit. The Journal of Trauma. 64: 1587-93. PMID 18545128 DOI: 10.1097/TA.0b013e318174f112 |
0.027 |
|
| 1995 |
Tortella BJ, Lavery RF, Cody RP, Doran J. Physician medical direction and advanced life support in the United States Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 2: 274-279. PMID 11727688 |
0.025 |
|
| 2011 |
Gregoire EP, Lavery R, Chassot AA, Akiyama H, Treier M, Behringer RR, Chaboissier MC. Transient development of ovotestes in XX Sox9 transgenic mice. Developmental Biology. 349: 65-77. PMID 20965161 DOI: 10.1016/J.Ydbio.2010.10.006 |
0.025 |
|
| 2001 |
Livingston DH, Lavery RF, Passannante MR, Skurnick JH, Baker S, Fabian TC, Fry DE, Malangoni MA. Free fluid on abdominal computed tomography without solid organ injury after blunt abdominal injury does not mandate celiotomy. American Journal of Surgery. 182: 6-9. PMID 11532406 DOI: 10.1016/S0002-9610(01)00665-1 |
0.025 |
|
| 1996 |
Tortella BJ, Lavery RF, Kamat M, Ramani M. Requiring on-line medical command for helicopter request prolongs computer-modeled transport time to the nearest trauma center Prehospital and Disaster Medicine. 11: 261-264. PMID 10163605 DOI: 10.1017/S1049023X00043090 |
0.025 |
|
| 1998 |
Slomovitz BM, Lavery RF, Tortella BJ, Siegel JH, Bachl BL, Ciccone A. Validation of a hand-held lactate device in determination of blood lactate in critically injured patients Critical Care Medicine. 26: 1523-1528. PMID 9751588 DOI: 10.1097/00003246-199809000-00019 |
0.025 |
|
| 2005 |
Shapiro T, Dalton M, Hammock J, Lavery R, Matjucha J, Salo DF. The prevalence of urinary tract infections and sexually transmitted disease in women with symptoms of a simple urinary tract infection stratified by low colony count criteria. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 12: 38-44. PMID 15635136 DOI: 10.1197/j.aem.2004.08.051 |
0.024 |
|
| 2014 |
Livingston DH, Lavery RF, Lopreiato MC, Lavery DF, Passannante MR. Unrelenting violence: an analysis of 6,322 gunshot wound patients at a Level I trauma center. The Journal of Trauma and Acute Care Surgery. 76: 2-9; discussion 9-11. PMID 24368351 DOI: 10.1097/Ta.0B013E3182Ab19E7 |
0.024 |
|
| 2011 |
Chassot AA, Gregoire EP, Lavery R, Taketo MM, de Rooij DG, Adams IR, Chaboissier MC. RSPO1/β-catenin signaling pathway regulates oogonia differentiation and entry into meiosis in the mouse fetal ovary. Plos One. 6: e25641. PMID 21991325 DOI: 10.1371/journal.pone.0025641 |
0.024 |
|
| 2013 |
Livingston DH, Lavery RF, N'kanza A, Anjaria D, Sifri ZC, Mohr AM, Mosenthal AC. Obesity does not increase morbidity and mortality after laparotomy for trauma. The American Surgeon. 79: 247-52. PMID 23461948 |
0.023 |
|
| 2000 |
Lavery RF, Livingston DH, Tortella BJ, Sambol JT, Slomovitz BM, Siegel JH. The utility of venous lactate to triage injured patients in the trauma center Journal of the American College of Surgeons. 190: 656-664. PMID 10873000 DOI: 10.1016/S1072-7515(00)00271-4 |
0.022 |
|
| 1998 |
Goodman ER, Kleinstein E, Fusco AM, Quinlan DP, Lavery R, Livingston DH, Deitch EA, Hauser CJ. Role of interleukin 8 in the genesis of acute respiratory distress syndrome through an effect on neutrophil apoptosis Archives of Surgery. 133: 1234-1239. PMID 9820356 |
0.022 |
|
| 1995 |
Tortella BJ, Lavery RF, Rekant M. Utility of routine admission serum chemistry panels in adult trauma patients Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 2: 190-194. PMID 7497032 |
0.021 |
|
| 2004 |
Salo D, Perez C, Lavery R, Malankar A, Borenstein M, Bernstein S. Patient education and the Internet: do patients want us to provide them with medical web sites to learn more about their medical problems? The Journal of Emergency Medicine. 26: 293-300. PMID 15028326 DOI: 10.1016/j.jemermed.2003.09.008 |
0.021 |
|
| 2007 |
Deitch EA, Livingston DH, Lavery RF, Monaghan SF, Bongu A, Machiedo GW. Hormonally active women tolerate shock-trauma better than do men: a prospective study of over 4000 trauma patients. Annals of Surgery. 246: 447-53; discussion 4. PMID 17717448 DOI: 10.1097/SLA.0b013e318148566 |
0.021 |
|
| 1999 |
Goodman ER, Stricker P, Velavicius M, Fonseca R, Kleinstein E, Lavery R, Deitch EA, Hauser CJ, Simms HH. Role of granulocyte-macrophage colony-stimulating factor and its receptor in the genesis of acute respiratory distress syndrome through an effect on neutrophil apoptosis Archives of Surgery. 134: 1049-1054. PMID 10522844 DOI: 10.1001/archsurg.134.10.1049 |
0.021 |
|
| 1996 |
Tortella BJ, Lavery RF, Doran JV, Siegel JH. Precision, accuracy, and managed care implications of a hand-held whole blood analyzer in the prehospital setting American Journal of Clinical Pathology. 106: 124-127. PMID 8701922 |
0.02 |
|
| 1998 |
Bisciglia JM, Binder C, Tortella BJ, Lavery RF. Think before you act: A national survey of interhospital transfer policies and practices Air Medical Journal. 17: 157-159. PMID 10185096 |
0.02 |
|
| 2007 |
Lavery R, Glennon M, Houghton J, Nolan A, Egan D, Maher M. Investigation of DAZ and RBMY1 gene expression in human testis by quantitative real-time PCR. Archives of Andrology. 53: 71-3. PMID 17453684 DOI: 10.1080/01485010600915228 |
0.02 |
|
| 2008 |
Sifri ZC, Kim H, Lavery R, Mohr A, Livingston DH. The impact of obesity on the outcome of emergency intubation in trauma patients. The Journal of Trauma. 65: 396-400. PMID 18695478 DOI: 10.1097/TA.0b013e31817f97fd |
0.019 |
|
| 1996 |
Lavery RJ. An extremely thin gravitational Arc formed by the distant cluster CL 0016+1609: Lensing of a compact HDF-type object? Astronomical Journal. 112: 1812-1815. DOI: 10.1086/118143 |
0.018 |
|
| 2003 |
Mohr AM, Pham AM, Lavery RF, Sifri Z, Bargman V, Livingston DH. Management of trauma to the male external genitalia: the usefulness of American Association for the Surgery of Trauma organ injury scales. The Journal of Urology. 170: 2311-5. PMID 14634403 DOI: 10.1097/01.ju.0000089241.71369.fa |
0.016 |
|
| 2002 |
Forsythe RM, Livingston DH, Lavery RF, Mosenthal AC, Hauser CJ. Autopsies in trauma do not add to peer review or quality assurance. The Journal of Trauma. 53: 321-5. PMID 12169941 |
0.015 |
|
| 2001 |
Allegra J, Lavery R, Cody R, Birnbaum G, Brennan J, Hartman A, Horowitz M, Nashed A, Yablonski M. Magnesium sulfate in the treatment of refractory ventricular fibrillation in the prehospital setting. Resuscitation. 49: 245-9. PMID 11719117 DOI: 10.1016/S0300-9572(00)00375-0 |
0.015 |
|
| 1999 |
Martino K, Merrit S, Boyakye K, Sernas T, Koller C, Hauser CJ, Lavery R, Livingston DH. Prospective randomized trial of thoracostomy removal algorithms Journal of Trauma - Injury, Infection and Critical Care. 46: 369-373. PMID 10088835 |
0.015 |
|
| 2009 |
Livingston DH, Tripp T, Biggs C, Lavery RF. A fate worse than death? Long-term outcome of trauma patients admitted to the surgical intensive care unit. The Journal of Trauma. 67: 341-8; discussion 34. PMID 19667888 DOI: 10.1097/TA.0b013e3181a5cc34 |
0.015 |
|
| 1998 |
Medina D, Lavery R, Ross SE, Livingston DH. Ureteral trauma: Preoperative studies neither predict injury nor prevent missed injuries Journal of the American College of Surgeons. 186: 641-644. PMID 9632150 DOI: 10.1016/S1072-7515(98)00108-2 |
0.014 |
|
| 2005 |
Livingston DH, Lavery RF, Mosenthal AC, Knudson MM, Lee S, Morabito D, Manley GT, Nathens A, Jurkovich G, Hoyt DB, Coimbra R. Recovery at one year following isolated traumatic brain injury: a Western Trauma Association prospective multicenter trial. The Journal of Trauma. 59: 1298-304; discussion. PMID 16394900 DOI: 10.1097/01.Ta.0000196002.03681.18 |
0.014 |
|
| 1996 |
Tortella BJ, Sambol J, Lavery RF, Cudihy K, Nadzam G. A comparison of pediatric and adult trauma patients transported by helicopter and ground EMS: Managed-care considerations Air Medical Journal. 15: 24-28. PMID 10154059 |
0.014 |
|
| 2004 |
Giuffrida AY, Lavery RF, Livingston DH. Pregnancy is not a useful tissue expander in patients with an open abdomen: a case report. The Journal of Trauma. 57: 881-3. PMID 15514547 DOI: 10.1097/01.TA.0000048210.94899.05 |
0.013 |
|
| 1996 |
McCluskey B, Addis M, Tortella BJ, Lavery RF. Out-of-hospital use of a pulse oximeter to determine systolic blood pressures Prehospital and Disaster Medicine. 11: 105-107. PMID 10159730 DOI: 10.1017/S1049023X00042734 |
0.013 |
|
| 2001 |
Adams JM, Hauser CJ, Livingston DH, Lavery RF, Fekete Z, Deitch EA. Early trauma polymorphonuclear neutrophil responses to chemokines are associated with development of sepsis, pneumonia, and organ failure. The Journal of Trauma. 51: 452-6; discussion 45. PMID 11535890 |
0.013 |
|
| 1995 |
Tortella BJ, Lavery RF, Chandrakantan A, Medina D. Incidence and risk factors for early small bowel obstruction after celiotomy for penetrating abdominal trauma American Surgeon. 61: 956-958. PMID 7486425 |
0.013 |
|
| 2003 |
Salo D, Eget D, Lavery RF, Garner L, Bernstein S, Tandon K. Can patients accurately read a visual analog pain scale? The American Journal of Emergency Medicine. 21: 515-9. PMID 14655227 DOI: 10.1016/j.ajem.2003.08.022 |
0.013 |
|
| 2003 |
Salo DF, Lavery R, Varma V, Goldberg J, Shapiro T, Kenwood A. A randomized, clinical trial comparing oral celecoxib 200 mg, celecoxib 400 mg, and ibuprofen 600 mg for acute pain. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 10: 22-30. PMID 12511311 DOI: 10.1197/aemj.10.1.22 |
0.012 |
|
| 2008 |
Egan CG, Lavery R, Caporali F, Fondelli C, Laghi-Pasini F, Dotta F, Sorrentino V. Generalised reduction of putative endothelial progenitors and CXCR4-positive peripheral blood cells in type 2 diabetes. Diabetologia. 51: 1296-305. PMID 18286257 DOI: 10.1007/s00125-008-0939-6 |
0.012 |
|
| 2000 |
Corriere C, Zarro C, Connelly PE, Tortella BJ, Lavery RF. A national survey of air medical infectious disease control practices. Air Medical Journal. 19: 8-12. PMID 11067238 |
0.012 |
|
| 1996 |
Tortella BJ, Lavery RF, Quadrel M, Cody RP, Heyt G. Use of on-line medical command to randomize patients in a prehospital research study Prehospital and Disaster Medicine. 11: 55-58. PMID 10160459 DOI: 10.1017/S1049023X00042357 |
0.011 |
|
| 2005 |
Dubensky JS, Lavery R. Torture: An interreligious debate The Torture Debate in America. 162-182. DOI: 10.1017/CBO9780511511110.010 |
0.011 |
|
| 2001 |
Bacon CL, Corriere C, Lavery RF, Livingston DH. The use of capnography in the air medical environment. Air Medical Journal. 20: 27-9. PMID 11552109 |
0.011 |
|
| 2012 |
Livingston DH, Lavery RF, Passannante MR. Re: Annual pediatric pedestrian education does not improve pedestrian behavior Journal of Trauma and Acute Care Surgery. 72: 1119-1120. DOI: 10.1097/TA.0b013e3182468b6f |
0.01 |
|
| 2008 |
Chassot AA, Gregoire EP, Magliano M, Lavery R, Chaboissier MC. Genetics of ovarian differentiation: Rspo1, a major player. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 2: 219-27. PMID 18987496 DOI: 10.1159/000152038 |
0.01 |
|
| 2005 |
Tarlowe MH, Duffy A, Kannan KB, Itagaki K, Lavery RF, Livingston DH, Bankey P, Hauser CJ. Prospective study of neutrophil chemokine responses in trauma patients at risk for pneumonia. American Journal of Respiratory and Critical Care Medicine. 171: 753-9. PMID 15618463 DOI: 10.1164/rccm.200307-917OC |
0.01 |
|
| 2004 |
Mosenthal AC, Livingston DH, Lavery RF, Knudson MM, Lee S, Morabito D, Manley GT, Nathens A, Jurkovich G, Hoyt DB, Coimbra R. The effect of age on functional outcome in mild traumatic brain injury: 6-month report of a prospective multicenter trial. The Journal of Trauma. 56: 1042-8. PMID 15179244 DOI: 10.1097/01.Ta.0000127767.83267.33 |
0.01 |
|
| 2003 |
Mohr AM, Lavery RF, Barone A, Bahramipour P, Magnotti LJ, Osband AJ, Sifri Z, Livingston DH. Angiographic embolization for liver injuries: low mortality, high morbidity. The Journal of Trauma. 55: 1077-81; discussion . PMID 14676654 DOI: 10.1097/01.TA.0000100219.02085.AB |
0.01 |
|
| 2002 |
Mehta SH, Doran JV, Lavery RF, Allegra JR. Improvements in prehospital medication storage practices in response to research. Prehospital Emergency Care : Official Journal of the National Association of Ems Physicians and the National Association of State Ems Directors. 6: 319-21. PMID 12109576 |
0.01 |
|
| 2002 |
Mosenthal AC, Lavery RF, Addis M, Kaul S, Ross S, Marburger R, Deitch EA, Livingston DH. Isolated traumatic brain injury: age is an independent predictor of mortality and early outcome. The Journal of Trauma. 52: 907-11. PMID 11988658 |
0.01 |
|
| 2002 |
Friel A, Houghton JA, Glennon M, Lavery R, Smith T, Nolan A, Maher M. A preliminary report on the implication of RT-PCR detection of DAZ, RBMY1, USP9Y and Protamine-2 mRNA in testicular biopsy samples from azoospermic men. International Journal of Andrology. 25: 59-64. PMID 11869379 DOI: 10.1046/j.1365-2605.2002.00326.x |
0.01 |
|
| 2000 |
Szucs P, Allegra JR, Fields LA, Grabiner FR, Lavery R, Prusik T, Tortella B. Storage temperatures of medications on an air medical helicopter. Air Medical Journal. 19: 19-21. PMID 11067232 |
0.01 |
|
| 2000 |
Allegra J, Brennan J, Fields L, Grabiner F, Kiss G, Lavery R, Prusik T. Monitoring the storage temperature of ambulance medications with time- temperature indicators Hospital Pharmacy. 35: 246-250. |
0.01 |
|
| 2000 |
Carmona R, Lavery RF, Livingston DH. Letter to the editor [2] (multiple letters) Journal of Trauma - Injury, Infection and Critical Care. 49: 789-791. |
0.01 |
|
| 1999 |
Allegra JR, Brennan J, Lanier V, Lavery R, MacKenzie B. Storage temperatures of out-of-hospital medications. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 6: 1098-103. PMID 10569380 |
0.01 |
|
| 1999 |
Lavery R. Northern Ireland Adoption and Fostering. 23: 74-75. DOI: 10.1177/030857599902300313 |
0.01 |
|
| 1997 |
Hauser CJ, Joshi P, Jones Q, Zhou X, Livingston DH, Lavery RF. Suppression of natural killer cell activity in patients with fracture/soft tissue injury Archives of Surgery. 132: 1326-1330. PMID 9403538 |
0.01 |
|
| 1997 |
Daniel Wang Q, Ulmer MP, Lavery RJ. Butcher & Oemler cluster A 2111: A head-on merger at z = 0.23 Monthly Notices of the Royal Astronomical Society. 288: 702-714. |
0.01 |
|
| 1996 |
Tortella BJ, Lavery RF, Corriere C, Bell RA, Mann KJ. The impact of multiple patient transport on patient care in helicopter emergency medical services Air Medical Journal. 15: 108-110. PMID 10159926 |
0.01 |
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| Hide low-probability matches. |
