Collin M. Stultz - Publications

Electrical Engineering and Computer Science Massachusetts Institute of Technology, Cambridge, MA, United States 
Computational Biophysics

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Gurry T, Fisher CK, Schmidt M, Stultz CM. Analyzing Ensembles of Amyloid Proteins Using Bayesian Statistics. Methods in Molecular Biology (Clifton, N.J.). 1345: 269-80. PMID 26453218 DOI: 10.1007/978-1-4939-2978-8_17  1
2014 Gurry T, Stultz CM. Mechanism of amyloid-β fibril elongation Biochemistry. 53: 6981-6991. PMID 25330398 DOI: 10.1021/bi500695g  1
2014 Zhong C, Gurry T, Cheng AA, Downey J, Deng Z, Stultz CM, Lu TK. Strong underwater adhesives made by self-assembling multi-protein nanofibres. Nature Nanotechnology. 9: 858-66. PMID 25240674 DOI: 10.1038/nnano.2014.199  1
2014 Liu Y, Syed Z, Scirica BM, Morrow DA, Guttag JV, Stultz CM. ECG morphological variability in beat space for risk stratification after acute coronary syndrome. Journal of the American Heart Association. 3: e000981. PMID 24963105 DOI: 10.1161/JAHA.114.000981  1
2014 Burger VM, Gurry T, Stultz CM. Intrinsically disordered proteins: Where computation meets experiment Polymers. 6: 2684-2719. DOI: 10.3390/polym6102684  1
2013 Gee EP, Yüksel D, Stultz CM, Ingber DE. SLLISWD sequence in the 10FNIII domain initiates fibronectin fibrillogenesis. The Journal of Biological Chemistry. 288: 21329-40. PMID 23740248 DOI: 10.1074/jbc.M113.462077  1
2013 Fisher CK, Ullman O, Stultz CM. Comparative studies of disordered proteins with similar sequences: Application to Aβ40 and Aβ42 Biophysical Journal. 104: 1546-1555. PMID 23561531 DOI: 10.1016/j.bpj.2013.02.023  1
2013 Lu KG, Stultz CM. Insight into the degradation of type-I collagen fibrils by MMP-8 Journal of Molecular Biology. 425: 1815-1825. PMID 23399546 DOI: 10.1016/j.jmb.2013.02.002  1
2013 Gurry T, Ullman O, Fisher CK, Perovic I, Pochapsky T, Stultz CM. The dynamic structure of α-synuclein multimers Journal of the American Chemical Society. 135: 3865-3872. PMID 23398399 DOI: 10.1021/ja310518p  1
2012 Liu JS, Schubert CR, Fu X, Fourniol FJ, Jaiswal JK, Houdusse A, Stultz CM, Moores CA, Walsh CA. Molecular basis for specific regulation of neuronal kinesin-3 motors by doublecortin family proteins. Molecular Cell. 47: 707-21. PMID 22857951 DOI: 10.1016/j.molcel.2012.06.025  1
2012 Walker S, Ullman O, Stultz CM. Using intramolecular disulfide bonds in tau protein to deduce structural features of aggregation-resistant conformations Journal of Biological Chemistry. 287: 9591-9600. PMID 22291015 DOI: 10.1074/jbc.M111.336107  1
2012 Fisher CK, Ullman O, Stultz CM. Efficient construction of disordered protein ensembles in a Bayesian framework with optimal selection of conformations. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 82-93. PMID 22174265  1
2011 Ullman O, Fisher CK, Stultz CM. Explaining the structural plasticity of α-synuclein Journal of the American Chemical Society. 133: 19536-19546. PMID 22029383 DOI: 10.1021/ja208657z  1
2011 Syed Z, Stultz CM, Scirica BM, Guttag JV. Computationally generated cardiac biomarkers for risk stratification after acute coronary syndrome. Science Translational Medicine. 3: 102ra95. PMID 21957173 DOI: 10.1126/scitranslmed.3002557  1
2011 Fisher CK, Stultz CM. Protein structure along the order - Disorder continuum Journal of the American Chemical Society. 133: 10022-10025. PMID 21650183 DOI: 10.1021/ja203075p  1
2011 Fisher CK, Stultz CM. Constructing ensembles for intrinsically disordered proteins Current Opinion in Structural Biology. 21: 426-431. PMID 21530234 DOI: 10.1016/  1
2011 Syed Z, Stultz CM, Scirica BM, Guttag JV. Computationally generated cardiac biomarkers for risk stratification after acute coronary syndrome (Science Translational Medicine (2011) 3 (111er8)) Science Translational Medicine. 3. DOI: 10.1126/scitranslmed.3003469  1
2010 Chen MM, Bartlett AI, Nerenberg PS, Friel CT, Hackenberger CP, Stultz CM, Radford SE, Imperiali B. Perturbing the folding energy landscape of the bacterial immunity protein Im7 by site-specific N-linked glycosylation. Proceedings of the National Academy of Sciences of the United States of America. 107: 22528-33. PMID 21148421 DOI: 10.1073/pnas.1015356107  1
2010 Fisher CK, Huang A, Stultz CM. Modeling intrinsically disordered proteins with Bayesian statistics Journal of the American Chemical Society. 132: 14919-14927. PMID 20925316 DOI: 10.1021/ja105832g  1
2010 Syed Z, Stultz C, Kellis M, Indyk P, Guttag J. Motif Discovery in Physiological Datasets: A Methodology for Inferring Predictive Elements. Acm Transactions On Knowledge Discovery From Data. 4: 2. PMID 20730037 DOI: 10.1145/1644873.1644875  1
2010 Phillips CM, Stultz CM, Drennan CL. Searching for the Nik operon: how a ligand-responsive transcription factor hunts for its DNA binding site. Biochemistry. 49: 7757-63. PMID 20712334 DOI: 10.1021/bi100947k  1
2010 Phillips CM, Schreiter ER, Stultz CM, Drennan CL. Structural basis of low-affinity nickel binding to the nickel-responsive transcription factor NikR from Escherichia coli. Biochemistry. 49: 7830-8. PMID 20704276 DOI: 10.1021/bi100923j  1
2010 Gurry T, Nerenberg PS, Stultz CM. The contribution of interchain salt bridges to triple-helical stability in collagen Biophysical Journal. 98: 2634-2643. PMID 20513408 DOI: 10.1016/j.bpj.2010.01.065  1
2010 Salsas-Escat R, Nerenberg PS, Stultz CM. Cleavage site specificity and conformational selection in type i collagen degradation Biochemistry. 49: 4147-4158. PMID 20394413 DOI: 10.1021/bi9021473  1
2010 Salsas-Escat R, Stultz CM. Conformational selection and collagenolysis in Type III collagen Proteins: Structure, Function and Bioinformatics. 78: 325-335. PMID 19731369 DOI: 10.1002/prot.22545  1
2009 Huang A, Stultz CM. Finding order within disorder: Elucidating the structure of proteins associated with neurodegenerative disease Future Medicinal Chemistry. 1: 467-482. PMID 21426127 DOI: 10.4155/fmc.09.40  1
2009 Phillips CM, Nerenberg PS, Drennan CL, Stultz CM. Physical basis of metal-binding specificity in Escherichia coli NikR. Journal of the American Chemical Society. 131: 10220-8. PMID 19621966 DOI: 10.1021/ja9026314  1
2009 Schubert CR, Stultz CM. The multi-copy simultaneous search methodology: A fundamental tool for structure-based drug design Journal of Computer-Aided Molecular Design. 23: 475-489. PMID 19506805 DOI: 10.1007/s10822-009-9287-y  1
2009 Syed Z, Sung P, Scirica BM, Morrow DA, Stultz CM, Guttag JV. Spectral energy of ECG morphologic differences to predict death. Cardiovascular Engineering (Dordrecht, Netherlands). 9: 18-26. PMID 19283476 DOI: 10.1007/s10558-009-9066-3  1
2009 Syed Z, Scirica BM, Mohanavelu S, Sung P, Michelson EL, Cannon CP, Stone PH, Stultz CM, Guttag JV. Relation of death within 90 days of non-ST-elevation acute coronary syndromes to variability in electrocardiographic morphology. The American Journal of Cardiology. 103: 307-11. PMID 19166680 DOI: 10.1016/j.amjcard.2008.09.099  1
2009 Yoon MK, Venkatachalam V, Huang A, Choi BS, Stultz CM, Chou JJ. Residual structure within the disordered C-terminal segment of p21(Waf1/Cip1/Sdi1) and its implications for molecular recognition. Protein Science : a Publication of the Protein Society. 18: 337-47. PMID 19165719 DOI: 10.1002/pro.34  1
2009 Salsas-Escat R, Stultz CM. The molecular mechanics of collagen degradation: Implications for human disease Experimental Mechanics. 49: 65-77. DOI: 10.1007/s11340-007-9105-1  1
2009 Syed Z, Scirica BM, Stultz CM, Guttag JV. Electrocardiographic prediction of arrhythmias Computers in Cardiology. 36: 565-567.  1
2008 Gee EP, Ingber DE, Stultz CM. Fibronectin unfolding revisited: modeling cell traction-mediated unfolding of the tenth type-III repeat. Plos One. 3: e2373. PMID 19020673 DOI: 10.1371/journal.pone.0002373  1
2008 Huang A, Stultz CM. The effect of a ΔK280 mutation on the unfolded state of a microtubule-binding repeat in tau Plos Computational Biology. 4. PMID 18725924 DOI: 10.1371/journal.pcbi.1000155  1
2008 Nerenberg PS, Stultz CM. Differential Unfolding of α1 and α2 Chains in Type I Collagen and Collagenolysis Journal of Molecular Biology. 382: 246-256. PMID 18644377 DOI: 10.1016/j.jmb.2008.07.009  1
2008 Nerenberg PS, Salsas-Escat R, Stultz CM. Do collagenases unwind triple-helical collagen before peptide bond hydrolysis? Reinterpreting experimental observations with mathematical models Proteins: Structure, Function and Genetics. 70: 1154-1161. PMID 17932911 DOI: 10.1002/prot.21687  1
2008 Syed Z, Scirica BM, Stultz CM, Guttag JV. Comparing symbolic representations of cardiac activity to identify patient populations with similar risk profiles Computers in Cardiology. 35: 85-88. DOI: 10.1109/CIC.2008.4748983  1
2008 Syed Z, Scirica BM, Stultz CM, Guttag JV. Risk-stratification following acute coronary syndromes using a novel electrocardiographic technique to measure variability in morphology Computers in Cardiology. 35: 13-16. DOI: 10.1109/CIC.2008.4748965  1
2007 Nerenberg PS, Salsas-Escat R, Stultz CM. Collagen - A necessary accomplice in the metastatic process Cancer Genomics and Proteomics. 4: 319-328. PMID 17993716  1
2007 Thomas AH, Edelman ER, Stultz CM. Collagen fragments modulate innate immunity. Experimental Biology and Medicine (Maywood, N.J.). 232: 406-11. PMID 17327474  1
2007 Huang A, Stultz CM. Conformational sampling with implicit solvent models: Application to the PHF6 peptide in tau protein Biophysical Journal. 92: 34-45. PMID 17040986 DOI: 10.1529/biophysj.106.091207  1
2007 Syed Z, Guttag J, Stultz C. Clustering and symbolic analysis of cardiovascular signals: Discovery and visualization of medically relevant patterns in long-term data using limited prior knowledge Eurasip Journal On Advances in Signal Processing. 2007. DOI: 10.1155/2007/67938  1
2006 Stultz CM. The folding mechanism of collagen-like model peptides explored through detailed molecular simulations Protein Science. 15: 2166-2177. PMID 16943446 DOI: 10.1110/ps.062124606  1
2006 Stultz CM. Cosmology and proteins: Landscape of possibilities Nature Physics. 2: 357. DOI: 10.1038/nphys317  1
2004 Stultz CM. An assessment of potential of mean force calculations with implicit solvent models Journal of Physical Chemistry B. 108: 16525-16532. DOI: 10.1021/jp047126t  1
2003 Stultz CM, Edelman ER. A structural model that explains the effects of hyperglycemia on collagenolysis. Biophysical Journal. 85: 2198-204. PMID 14507685 DOI: 10.1016/S0006-3495(03)74645-1  1
2002 Stultz CM, Levin AD, Edelman ER. Phosphorylation-induced conformational changes in a mitogen-activated protein kinase substrate. Implications for tyrosine hydroxylase activation. The Journal of Biological Chemistry. 277: 47653-61. PMID 12361946 DOI: 10.1074/jbc.M208755200  1
2002 Stultz CM. Localized unfolding of collagen explains collagenase cleavage near imino-poor sites Journal of Molecular Biology. 319: 997-1003. PMID 12079342 DOI: 10.1016/S0022-2836(02)00421-7  1
2000 Stultz CM, Karplus M. Dynamic ligand design and combinatorial optimization: designing inhibitors to endothiapepsin. Proteins. 40: 258-89. PMID 10842341 DOI: 10.1002/(SICI)1097-0134(20000801)40:2<258::AID-PROT80>3.0.CO;2-I  1
1999 Stultz CM, Karplus M. MCSS functionality maps for a flexible protein. Proteins. 37: 512-29. PMID 10651268 DOI: 10.1002/(SICI)1097-0134(19991201)37:4<512::AID-PROT3>3.0.CO;2-O  1
1998 Stultz CM, Karplus M. On the potential surface of the locally enhanced sampling approximation Journal of Chemical Physics. 109: 8809-8815. DOI: 10.1063/1.477551  1
1997 Stultz CM, Nambudripad R, Lathrop RH, White JV. Predicting Protein Structure With Probabilistic Models Advances in Molecular and Cell Biology. 22: 447-506. DOI: 10.1016/S1569-2558(08)60483-X  1
1994 White JV, Stultz CM, Smith TF. Protein classification by stochastic modeling and optimal filtering of amino-acid sequences Mathematical Biosciences. 119: 35-75. PMID 8111135 DOI: 10.1016/0025-5564(94)90004-3  1
1993 Stultz CM, White JV, Smith TF. Structural analysis based on state-space modeling Protein Science. 2: 305-314. PMID 8453370  1
1990 Pierre-Jacques H, Morris C, Lucas P, Stultz C, Cho E, Yu J, Laurencin C. Bioerodible polymers for use in bone. Novel approaches American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 31: 247.  1
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