Alexander Scherl - Publications

Affiliations: 
2005-2008 Medicinal Chemistrty University of Washington School of Pharmacy 

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Campos A, Díaz R, Martínez-Bartolomé S, Sierra J, Gallardo O, Sabidó E, López-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, et al. Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers. Journal of Proteomics. PMID 25982386 DOI: 10.1016/j.jprot.2015.05.012  0.56
2014 Sandström von Tobel J, Zoia D, Althaus J, Antinori P, Mermoud J, Pak HS, Scherl A, Monnet-Tschudi F. Immediate and delayed effects of subchronic Paraquat exposure during an early differentiation stage in 3D-rat brain cell cultures. Toxicology Letters. 230: 188-97. PMID 24521700 DOI: 10.1016/j.toxlet.2014.02.001  0.56
2014 Steiner C, Ducret A, Tille JC, Thomas M, McKee TA, Rubbia-Brandt L, Scherl A, Lescuyer P, Cutler P. Applications of mass spectrometry for quantitative protein analysis in formalin-fixed paraffin-embedded tissues. Proteomics. 14: 441-51. PMID 24339433 DOI: 10.1002/pmic.201300311  0.56
2013 Pak H, Nikitin F, Gluck F, Lisacek F, Scherl A, Muller M. Clustering and filtering tandem mass spectra acquired in data-independent mode. Journal of the American Society For Mass Spectrometry. 24: 1862-71. PMID 24006250 DOI: 10.1007/s13361-013-0720-z  0.56
2013 Bouchal P, Dvorakova M, Scherl A, Garbis SD, Nenutil R, Vojtesek B. Intact protein profiling in breast cancer biomarker discovery: protein identification issue and the solutions based on 3D protein separation, bottom-up and top-down mass spectrometry. Proteomics. 13: 1053-8. PMID 23303686 DOI: 10.1002/pmic.201200121  0.56
2011 Kistler AD, Siwy J, Breunig F, Jeevaratnam P, Scherl A, Mullen W, Warnock DG, Wanner C, Hughes DA, Mischak H, Wüthrich RP, Serra AL. A distinct urinary biomarker pattern characteristic of female Fabry patients that mirrors response to enzyme replacement therapy. Plos One. 6: e20534. PMID 21698285 DOI: 10.1371/journal.pone.0020534  0.56
2010 Dayon L, Turck N, Kienle S, Schulz-Knappe P, Hochstrasser DF, Scherl A, Sanchez JC. Isobaric tagging-based selection and quantitation of cerebrospinal fluid tryptic peptides with reporter calibration curves. Analytical Chemistry. 82: 848-58. PMID 20058875 DOI: 10.1021/ac901854k  0.56
2009 Tsai YS, Scherl A, Shaw JL, MacKay CL, Shaffer SA, Langridge-Smith PR, Goodlett DR. Precursor ion independent algorithm for top-down shotgun proteomics. Journal of the American Society For Mass Spectrometry. 20: 2154-66. PMID 19773183 DOI: 10.1016/j.jasms.2009.07.024  0.56
2009 Panchaud A, Scherl A, Shaffer SA, von Haller PD, Kulasekara HD, Miller SI, Goodlett DR. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Analytical Chemistry. 81: 6481-8. PMID 19572557 DOI: 10.1021/ac900888s  0.56
2008 Singh P, Shaffer SA, Scherl A, Holman C, Pfuetzner RA, Larson Freeman TJ, Miller SI, Hernandez P, Appel RD, Goodlett DR. Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Analytical Chemistry. 80: 8799-806. PMID 18947195 DOI: 10.1021/ac801646f  0.56
2008 Scherl A, Tsai YS, Shaffer SA, Goodlett DR. Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics. 8: 2791-7. PMID 18655048 DOI: 10.1002/pmic.200800045  0.56
2008 Scherl A, Shaffer SA, Taylor GK, Hernandez P, Appel RD, Binz PA, Goodlett DR. On the benefits of acquiring peptide fragment ions at high measured mass accuracy. Journal of the American Society For Mass Spectrometry. 19: 891-901. PMID 18417358 DOI: 10.1016/j.jasms.2008.02.005  0.56
2008 Scherl A, Shaffer SA, Taylor GK, Kulasekara HD, Miller SI, Goodlett DR. Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Analytical Chemistry. 80: 1182-91. PMID 18211032 DOI: 10.1021/ac701680f  0.56
2006 Nunn BL, Shaffer SA, Scherl A, Gallis B, Wu M, Miller SI, Goodlett DR. Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Briefings in Functional Genomics & Proteomics. 5: 154-68. PMID 16798750 DOI: 10.1093/bfgp/ell024  0.56
2005 Scherl A, François P, Bento M, Deshusses JM, Charbonnier Y, Converset V, Huyghe A, Walter N, Hoogland C, Appel RD, Sanchez JC, Zimmermann-Ivol CG, Corthals GL, Hochstrasser DF, Schrenzel J. Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth. Journal of Microbiological Methods. 60: 247-57. PMID 15590099 DOI: 10.1016/j.mimet.2004.09.017  0.56
2004 Scherl A, Francois P, Converset V, Bento M, Burgess JA, Sanchez JC, Hochstrasser DF, Schrenzel J, Corthals GL. Nonredundant mass spectrometry: a strategy to integrate mass spectrometry acquisition and analysis. Proteomics. 4: 917-27. PMID 15048974 DOI: 10.1002/pmic.200300673  0.56
2003 Deshusses JM, Burgess JA, Scherl A, Wenger Y, Walter N, Converset V, Paesano S, Corthals GL, Hochstrasser DF, Sanchez JC. Exploitation of specific properties of trifluoroethanol for extraction and separation of membrane proteins. Proteomics. 3: 1418-24. PMID 12923766 DOI: 10.1002/pmic.200300492  0.56
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