| Year |
Citation |
Score |
| 2024 |
Norn C, Oliveira F, André I. Improved prediction of site-rates from structure with averaging across homologs. Protein Science : a Publication of the Protein Society. 33: e5086. PMID 38923241 DOI: 10.1002/pro.5086 |
0.369 |
|
| 2023 |
Jeppesen M, André I. Accurate prediction of protein assembly structure by combining AlphaFold and symmetrical docking. Nature Communications. 14: 8283. PMID 38092742 DOI: 10.1038/s41467-023-43681-6 |
0.486 |
|
| 2022 |
Varela D, Karlin V, André I. A memetic algorithm enables efficient local and global all-atom protein-protein docking with backbone and side-chain flexibility. Structure (London, England : 1993). 30: 1550-1558.e3. PMID 36265485 DOI: 10.1016/j.str.2022.09.005 |
0.357 |
|
| 2021 |
Møller MS, Olesen SV, André I. An ultra-high affinity protein-protein interface displaying sequence-robustness. Protein Science : a Publication of the Protein Society. 30: 1144-1156. PMID 33837990 DOI: 10.1002/pro.4080 |
0.305 |
|
| 2021 |
Leonardo DA, Cavini IA, Sala FA, Mendonça DC, V D Rosa H, Kumagai PS, Crusca E, Valadares NF, Marques IA, Brandão-Neto J, Munte CE, Kalbitzer HR, Soler N, Usón I, André I, et al. Orientational Ambiguity in Septin Coiled Coils and its Structural Basis. Journal of Molecular Biology. 166889. PMID 33639214 DOI: 10.1016/j.jmb.2021.166889 |
0.374 |
|
| 2020 |
Oliver RC, Potrzebowski W, Najibi SM, Nors Pedersen M, Arleth L, Mahmoudi N, André I. Assembly of Capsids from Hepatitis B Virus Core Protein Progresses through Highly Populated Intermediates in Presence and Absence of RNA. Acs Nano. PMID 32672447 DOI: 10.1021/Acsnano.0C03569 |
0.393 |
|
| 2018 |
Potrzebowski W, Trewhella J, Andre I. Bayesian inference of protein conformational ensembles from limited structural data. Plos Computational Biology. 14: e1006641. PMID 30557358 DOI: 10.1371/Journal.Pcbi.1006641 |
0.493 |
|
| 2018 |
Lizatović R, Assent M, Barendregt A, Dahlin J, Bille A, Satzinger K, Tupina D, Heck AJ, Wennmalm S, André I. A protein encapsulation system with Ca2+-controlled cargo loading and detachment. Angewandte Chemie (International Ed. in English). PMID 29975817 DOI: 10.1002/Anie.201806466 |
0.358 |
|
| 2018 |
André I, Bjelic S. Computational assessment of folding energy landscapes in heterodimeric coiled coils. Proteins. PMID 29675909 DOI: 10.1002/Prot.25516 |
0.458 |
|
| 2018 |
André I. Modeling the Structure of Helical Assemblies with Experimental Constraints in Rosetta. Methods in Molecular Biology (Clifton, N.J.). 1764: 475-489. PMID 29605934 DOI: 10.1007/978-1-4939-7759-8_30 |
0.524 |
|
| 2016 |
Boelt SG, Norn C, Rasmussen MI, Andre I, Čiplys E, Slibinskas R, Houen G, Højrup P. Mapping the Ca(2+) induced structural change in calreticulin. Journal of Proteomics. PMID 27195812 DOI: 10.1016/J.Jprot.2016.05.015 |
0.384 |
|
| 2016 |
Lizatović R, Aurelius O, Stenström O, Drakenberg T, Akke M, Logan DT, André I. A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch. Structure (London, England : 1993). PMID 27161978 DOI: 10.1016/J.Str.2016.03.027 |
0.354 |
|
| 2016 |
Norn CH, André I. Computational design of protein self-assembly. Current Opinion in Structural Biology. 39: 39-45. PMID 27127996 DOI: 10.1016/J.Sbi.2016.04.002 |
0.368 |
|
| 2015 |
Potrzebowski W, André I. Automated determination of fibrillar structures by simultaneous model building and fiber diffraction refinement. Nature Methods. PMID 25961412 DOI: 10.1038/Nmeth.3399 |
0.338 |
|
| 2015 |
Rämisch S, Lizatovi? R, André I. Automated de novo phasing and model building of coiled-coil proteins. Acta Crystallographica. Section D, Biological Crystallography. 71: 606-14. PMID 25760609 DOI: 10.1107/S1399004714028247 |
0.519 |
|
| 2015 |
Kaltofen S, Li C, Huang PS, Serpell LC, Barth A, André I. Computational de novo design of a self-assembling peptide with predefined structure. Journal of Molecular Biology. 427: 550-62. PMID 25498388 DOI: 10.1016/J.Jmb.2014.12.002 |
0.552 |
|
| 2015 |
Rämisch S, Lizatovi? R, André I. Exploring alternate states and oligomerization preferences of coiled-coils by de novo structure modeling. Proteins. 83: 235-47. PMID 25402423 DOI: 10.1002/Prot.24729 |
0.503 |
|
| 2015 |
Rämisch S, Weininger U, Martnisson J, Akke M, André I. Computational Design of Repeat-Proteins with a Predefined Geometry Biophysical Journal. 108: 13a. DOI: 10.1016/J.Bpj.2014.11.097 |
0.457 |
|
| 2014 |
Rämisch S, Weininger U, Martinsson J, Akke M, André I. Computational design of a leucine-rich repeat protein with a predefined geometry. Proceedings of the National Academy of Sciences of the United States of America. 111: 17875-80. PMID 25427795 DOI: 10.1073/Pnas.1413638111 |
0.468 |
|
| 2013 |
Topham CM, Rouquier M, Tarrat N, André I. Adaptive Smith-Waterman residue match seeding for protein structural alignment. Proteins. 81: 1823-39. PMID 23720362 DOI: 10.1002/prot.24327 |
0.348 |
|
| 2012 |
Guérin F, Barbe S, Pizzut-Serin S, Potocki-Véronèse G, Guieysse D, Guillet V, Monsan P, Mourey L, Remaud-Siméon M, André I, Tranier S. Structural investigation of the thermostability and product specificity of amylosucrase from the bacterium Deinococcus geothermalis. The Journal of Biological Chemistry. 287: 6642-54. PMID 22210773 DOI: 10.1074/Jbc.M111.322917 |
0.316 |
|
| 2012 |
Elkin M, Andre I, Lukatsky DB. Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions Journal of Statistical Physics. 146: 870-877. DOI: 10.1007/S10955-012-0421-1 |
0.428 |
|
| 2011 |
Huang PS, Ban YE, Richter F, Andre I, Vernon R, Schief WR, Baker D. RosettaRemodel: a generalized framework for flexible backbone protein design. Plos One. 6: e24109. PMID 21909381 DOI: 10.1371/Journal.Pone.0024109 |
0.731 |
|
| 2011 |
DiMaio F, Leaver-Fay A, Bradley P, Baker D, André I. Modeling symmetric macromolecular structures in Rosetta3. Plos One. 6: e20450. PMID 21731614 DOI: 10.1371/Journal.Pone.0020450 |
0.771 |
|
| 2011 |
Sgourakis NG, Lange OF, DiMaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D. Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings. Journal of the American Chemical Society. 133: 6288-98. PMID 21466200 DOI: 10.1021/Ja111318M |
0.723 |
|
| 2010 |
Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Rosetta in CAPRI rounds 13-19. Proteins. 78: 3212-8. PMID 20597089 DOI: 10.1002/Prot.22784 |
0.742 |
|
| 2009 |
Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D. Simultaneous prediction of protein folding and docking at high resolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 18978-83. PMID 19864631 DOI: 10.1073/Pnas.0904407106 |
0.688 |
|
| 2009 |
Spreter T, Yip CK, Sanowar S, André I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC. A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. Nature Structural & Molecular Biology. 16: 468-76. PMID 19396170 DOI: 10.1038/Nsmb.1603 |
0.412 |
|
| 2008 |
André I, Strauss CE, Kaplan DB, Bradley P, Baker D. Emergence of symmetry in homooligomeric biological assemblies. Proceedings of the National Academy of Sciences of the United States of America. 105: 16148-52. PMID 18849473 DOI: 10.1073/Pnas.0807576105 |
0.604 |
|
| 2008 |
Sawaya MR, Wojtowicz WM, Andre I, Qian B, Wu W, Baker D, Eisenberg D, Zipursky SL. A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms. Cell. 134: 1007-18. PMID 18805093 DOI: 10.1016/J.Cell.2008.07.042 |
0.458 |
|
| 2007 |
André I, Linse S, Mulder FA. Residue-specific pKa determination of lysine and arginine side chains by indirect 15N and 13C NMR spectroscopy: application to apo calmodulin. Journal of the American Chemical Society. 129: 15805-13. PMID 18044888 DOI: 10.1021/Ja0721824 |
0.376 |
|
| 2007 |
André I, Bradley P, Wang C, Baker D. Prediction of the structure of symmetrical protein assemblies. Proceedings of the National Academy of Sciences of the United States of America. 104: 17656-61. PMID 17978193 DOI: 10.1073/Pnas.0702626104 |
0.724 |
|
| 2007 |
Das R, Qian B, Raman S, Vernon R, Thompson J, Bradley P, Khare S, Tyka MD, Bhat D, Chivian D, Kim DE, Sheffler WH, Malmström L, Wollacott AM, Wang C, ... Andre I, et al. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins. 69: 118-28. PMID 17894356 DOI: 10.1002/Prot.21636 |
0.588 |
|
| 2007 |
Wojtowicz WM, Wu W, Andre I, Qian B, Baker D, Zipursky SL. A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains. Cell. 130: 1134-45. PMID 17889655 DOI: 10.1016/J.Cell.2007.08.026 |
0.427 |
|
| 2007 |
Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D. RosettaDock in CAPRI rounds 6-12. Proteins. 69: 758-63. PMID 17671979 DOI: 10.1002/Prot.21684 |
0.78 |
|
| 2007 |
Lindman S, Linse S, Mulder FA, André I. pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability. Biophysical Journal. 92: 257-66. PMID 17040982 DOI: 10.1529/Biophysj.106.088682 |
0.358 |
|
| 2006 |
Lindman S, Linse S, Mulder FA, André I. Electrostatic contributions to residue-specific protonation equilibria and proton binding capacitance for a small protein. Biochemistry. 45: 13993-4002. PMID 17115694 DOI: 10.1021/Bi061555V |
0.315 |
|
| 2006 |
André I, Kesvatera T, Jönsson B, Linse S. Salt enhances calmodulin-target interaction. Biophysical Journal. 90: 2903-10. PMID 16428276 DOI: 10.1529/Biophysj.105.068718 |
0.342 |
|
| 2004 |
André I, Kesvatera T, Jönsson B, Akerfeldt KS, Linse S. The role of electrostatic interactions in calmodulin-peptide complex formation. Biophysical Journal. 87: 1929-38. PMID 15345569 DOI: 10.1529/Biophysj.104.040998 |
0.31 |
|
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