| Year |
Citation |
Score |
| 2020 |
Celebi R, Rebelo Moreira J, Hassan AA, Ayyar S, Ridder L, Kuhn T, Dumontier M. Towards FAIR protocols and workflows: the OpenPREDICT use case. Peerj. Computer Science. 6: e281. PMID 33816932 DOI: 10.7717/Peerj-Cs.281 |
0.408 |
|
| 2020 |
Vos RA, Katayama T, Mishima H, Kawano S, Kawashima S, Kim JD, Moriya Y, Tokimatsu T, Yamaguchi A, Yamamoto Y, Wu H, Amstutz P, Antezana E, Aoki NP, Arakawa K, ... ... Dumontier M, et al. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000research. 9: 136. PMID 32308977 DOI: 10.12688/F1000Research.18236.1 |
0.374 |
|
| 2020 |
Moodley K, Hernandez-Serrano PV, Zaveri AJ, Schaper MG, Dumontier M, Dijck GV. The Case for a Linked Data Research Engine for Legal Scholars European Journal of Risk Regulation. 11: 70-93. DOI: 10.1017/Err.2019.51 |
0.359 |
|
| 2019 |
Celebi R, Uyar H, Yasar E, Gumus O, Dikenelli O, Dumontier M. Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. Bmc Bioinformatics. 20: 726. PMID 31852427 DOI: 10.1186/S12859-019-3284-5 |
0.312 |
|
| 2019 |
Clarke DJB, Wang L, Jones A, Wojciechowicz ML, Torre D, Jagodnik KM, Jenkins SL, McQuilton P, Flamholz Z, Silverstein MC, Schilder BM, Robasky K, Castillo C, Idaszak R, Ahalt SC, ... ... Dumontier MJ, et al. FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Cell Systems. PMID 31677972 DOI: 10.1016/J.Cels.2019.09.011 |
0.308 |
|
| 2019 |
Wilkinson MD, Dumontier M, Sansone SA, Bonino da Silva Santos LO, Prieto M, Batista D, McQuilton P, Kuhn T, Rocca-Serra P, Crosas M, Schultes E. Evaluating FAIR maturity through a scalable, automated, community-governed framework. Scientific Data. 6: 174. PMID 31541130 DOI: 10.1038/S41597-019-0184-5 |
0.322 |
|
| 2019 |
Sun C, Ippel L, van Soest J, Wouters B, Malic A, Adekunle O, van den Berg B, Mussmann O, Koster A, van der Kallen C, van Oppen C, Townend D, Dekker A, Dumontier M. A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. Studies in Health Technology and Informatics. 264: 373-377. PMID 31437948 DOI: 10.3233/Shti190246 |
0.321 |
|
| 2019 |
Celebi R, Walk OBD, Movva R, Alpsoy S, Dumontier M. In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data Scientific Reports. 9: 8949. PMID 31222109 DOI: 10.1038/S41598-019-45236-6 |
0.313 |
|
| 2019 |
Madadevaiah G, Prasad R, Hiremath A, Dumontier M, Dekker A. Authorization Framework for Medical Data International Journal of Database Management Systems. 11: 7. DOI: 10.5121/Ijdms.2019.11302 |
0.357 |
|
| 2019 |
Katayama T, Kawashima S, Micklem G, Kawano S, Kim J, Kocbek S, Okamoto S, Wang Y, Wu H, Yamaguchi A, Yamamoto Y, Antezana E, Aoki-Kinoshita KF, Arakawa K, Banno M, ... ... Dumontier M, et al. BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services F1000research. 8: 1677. DOI: 10.12688/F1000Research.18238.1 |
0.382 |
|
| 2019 |
Sang S, Yang Z, Liu X, Wang L, Lin H, Wang J, Dumontier M. GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures Ieee Access. 7: 8404-8415. DOI: 10.1109/Access.2018.2886311 |
0.308 |
|
| 2018 |
Ta CN, Dumontier M, Hripcsak G, Tatonetti NP, Weng C. Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records. Scientific Data. 5: 180273. PMID 30480666 DOI: 10.1038/Sdata.2018.273 |
0.329 |
|
| 2018 |
Wilkinson MD, Sansone SA, Schultes E, Doorn P, Bonino da Silva Santos LO, Dumontier M. A design framework and exemplar metrics for FAIRness. Scientific Data. 5: 180118. PMID 29944145 DOI: 10.1038/Sdata.2018.118 |
0.319 |
|
| 2018 |
Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M. Biotea: semantics for Pubmed Central. Peerj. 6: e4201. PMID 29312824 DOI: 10.7717/Peerj.4201 |
0.431 |
|
| 2018 |
Verborgh R, Dumontier M. A Web API Ecosystem through Feature-Based Reuse Ieee Internet Computing. 22: 29-37. DOI: 10.1109/Mic.2018.032501515 |
0.345 |
|
| 2017 |
Zhang Y, Zheng W, Lin H, Wang J, Yang Z, Dumontier M. Drug-drug Interaction Extraction via Hierarchical RNNs on Sequence and Shortest Dependency Paths. Bioinformatics (Oxford, England). PMID 29077847 DOI: 10.1093/Bioinformatics/Btx659 |
0.328 |
|
| 2017 |
Nelson SJ, Oprea TI, Ursu O, Bologa CG, Zaveri A, Holmes J, Yang JJ, Mathias SL, Mani S, Tuttle MS, Dumontier M. Formalizing drug indications on the road to therapeutic intent. Journal of the American Medical Informatics Association : Jamia. 24: 1169-1172. PMID 29016968 DOI: 10.1093/Jamia/Ocx064 |
0.304 |
|
| 2017 |
Hu W, Zaveri A, Qiu H, Dumontier M. Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. Bmc Bioinformatics. 18: 415. PMID 28923003 DOI: 10.1186/S12859-017-1832-4 |
0.361 |
|
| 2017 |
McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, et al. Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. Plos Biology. 15: e2001414. PMID 28662064 DOI: 10.1371/Journal.Pbio.2001414 |
0.399 |
|
| 2017 |
Panahiazar M, Dumontier M, Gevaert O. Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). Journal of Biomedical Informatics. 72: 132-139. PMID 28625880 DOI: 10.1016/J.Jbi.2017.06.017 |
0.303 |
|
| 2017 |
Jagodnik KM, Koplev S, Jenkins S, Ohno-Machado L, Paten B, Schurer SC, Dumontier M, Verborgh R, Bui A, Ping P, McKenna NJ, Madduri R, Pillai A, Ma'ayan A. Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop. Journal of Biomedical Informatics. PMID 28501646 DOI: 10.1016/J.Jbi.2017.05.006 |
0.405 |
|
| 2017 |
Wilkinson MD, Verborgh R, Santos LOBdS, Clark T, Swertz MA, Kelpin FDL, Gray AJG, Schultes EA, Mulligen EMv, Ciccarese P, Kuzniar A, Gavai A, Thompson M, Kaliyaperumal R, Bolleman JT, ... Dumontier M, et al. Interoperability and FAIRness through a novel combination of Web technologies Peerj. 3: 110. DOI: 10.7717/Peerj-Cs.110 |
0.386 |
|
| 2017 |
McCusker JP, Dumontier M, Yan R, He S, Dordick JS, McGuinness DL. Finding melanoma drugs through a probabilistic knowledge graph Peerj Computer Science. 3: e106. DOI: 10.7717/Peerj-Cs.106 |
0.339 |
|
| 2017 |
Mons B, Neylon C, Velterop J, Dumontier M, Santos LOBdS, Wilkinson MD. Cloudy, increasingly FAIR; Revisiting the FAIR Data guiding principles for the European Open Science Cloud Information Services & Use. 37: 49-56. DOI: 10.3233/Isu-170824 |
0.359 |
|
| 2016 |
Posch L, Panahiazar M, Dumontier M, Gevaert O. Predicting structured metadata from unstructured metadata Database. 2016. PMID 28637268 DOI: 10.1093/Database/Baw080 |
0.376 |
|
| 2016 |
Verspoor K, Oellrich A, Collier N, Groza T, Rocca-Serra P, Soldatova L, Dumontier M, Shah N. Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. Journal of Biomedical Semantics. 7: 66. PMID 27955708 DOI: 10.1186/S13326-016-0108-7 |
0.384 |
|
| 2016 |
Dumontier M, Gray AJ, Marshall MS, Alexiev V, Ansell P, Bader G, Baran J, Bolleman JT, Callahan A, Cruz-Toledo J, Gaudet P, Gombocz EA, Gonzalez-Beltran AN, Groth P, Haendel M, et al. The health care and life sciences community profile for dataset descriptions. Peerj. 4: e2331. PMID 27602295 DOI: 10.7717/Peerj.2331 |
0.571 |
|
| 2016 |
Bolleman JT, Mungall CJ, Strozzi F, Baran J, Dumontier M, Bonnal RJ, Buels R, Hoehndorf R, Fujisawa T, Katayama T, Cock PJ. FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. Journal of Biomedical Semantics. 7: 39. PMID 27296299 DOI: 10.1186/S13326-016-0067-Z |
0.364 |
|
| 2016 |
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/Journal.Pone.0154556 |
0.417 |
|
| 2016 |
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, et al. The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data. 3: 160018. PMID 26978244 DOI: 10.1038/Sdata.2016.18 |
0.349 |
|
| 2016 |
Mortensen JM, Telis N, Hughey JJ, Fan-Minogue H, Van Auken K, Dumontier M, Musen MA. Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. Journal of Biomedical Informatics. PMID 26873781 DOI: 10.1016/J.Jbi.2016.02.005 |
0.315 |
|
| 2016 |
Kuhn T, Chichester C, Krauthammer M, Queralt-Rosinach N, Verborgh R, Giannakopoulos G, Ngomo AN, Viglianti R, Dumontier M. Decentralized provenance-aware publishing with nanopublications Peerj. 2: 1-29. DOI: 10.7717/Peerj-Cs.78 |
0.364 |
|
| 2016 |
Queralt-Rosinach N, Kuhn T, Chichester C, Dumontier M, Sanz F, Furlong LI. Publishing DisGeNET as nanopublications Social Work. 7: 519-528. DOI: 10.3233/Sw-150189 |
0.426 |
|
| 2015 |
Soldatova LN, Collier N, Oellrich A, Groza T, Verspoor K, Rocca-Serra P, Dumontier M, Shah NH. Special issue on bio-ontologies and phenotypes. Journal of Biomedical Semantics. 6: 40. PMID 26682035 DOI: 10.1186/S13326-015-0040-2 |
0.322 |
|
| 2015 |
Oellrich A, Collier N, Groza T, Rebholz-Schuhmann D, Shah N, Bodenreider O, Boland MR, Georgiev I, Liu H, Livingston K, Luna A, Mallon AM, Manda P, Robinson PN, Rustici G, ... ... Dumontier M, et al. The digital revolution in phenotyping. Briefings in Bioinformatics. PMID 26420780 DOI: 10.1093/Bib/Bbv083 |
0.389 |
|
| 2015 |
Fu G, Batchelor C, Dumontier M, Hastings J, Willighagen E, Bolton E. PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. Journal of Cheminformatics. 7: 34. PMID 26175801 DOI: 10.1186/S13321-015-0084-4 |
0.429 |
|
| 2015 |
Starr J, Castro E, Crosas M, Dumontier M, Downs RR, Duerr R, Haak LL, Haendel M, Herman I, Hodson S, Hourclé J, Kratz JE, Lin J, Nielsen LH, Nurnberger A, et al. Achieving human and machine accessibility of cited data in scholarly publications. Peerj. Computer Science. 1. PMID 26167542 DOI: 10.7717/Peerj-Cs.1 |
0.388 |
|
| 2015 |
Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/Jamia/Ocv048 |
0.394 |
|
| 2015 |
Kamdar MR, Dumontier M. An Ebola virus-centered knowledge base. Database. 2015. PMID 26055098 DOI: 10.1093/Database/Bav049 |
0.369 |
|
| 2015 |
Baran J, Durgahee BS, Eilbeck K, Antezana E, Hoehndorf R, Dumontier M. GFVO: the Genomic Feature and Variation Ontology. Peerj. 3: e933. PMID 26019997 DOI: 10.7717/Peerj.933 |
0.367 |
|
| 2015 |
Ayvaz S, Horn J, Hassanzadeh O, Zhu Q, Stan J, Tatonetti NP, Vilar S, Brochhausen M, Samwald M, Rastegar-Mojarad M, Dumontier M, Boyce RD. Toward a complete dataset of drug-drug interaction information from publicly available sources. Journal of Biomedical Informatics. 55: 206-17. PMID 25917055 DOI: 10.1016/J.Jbi.2015.04.006 |
0.373 |
|
| 2015 |
Callahan A, Cifuentes JJ, Dumontier M. An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. Bmc Bioinformatics. 16: 40. PMID 25888240 DOI: 10.1186/S12859-015-0469-4 |
0.328 |
|
| 2015 |
Samwald M, Miñarro Giménez JA, Boyce RD, Freimuth RR, Adlassnig KP, Dumontier M. Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. Bmc Medical Informatics and Decision Making. 15: 12. PMID 25880555 DOI: 10.1186/S12911-015-0130-1 |
0.341 |
|
| 2015 |
Wimalaratne SM, Bolleman J, Juty N, Katayama T, Dumontier M, Redaschi N, Le Novère N, Hermjakob H, Laibe C. SPARQL-enabled identifier conversion with Identifiers.org. Bioinformatics (Oxford, England). 31: 1875-7. PMID 25638809 DOI: 10.1093/Bioinformatics/Btv064 |
0.38 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Dumontier M, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.384 |
|
| 2015 |
Verspoor K, Kim J, Dumontier M. Interoperability of text corpus annotations with the semantic web Bmc Proceedings. 9: 1-3. DOI: 10.1186/1753-6561-9-S5-A2 |
0.375 |
|
| 2015 |
Kuhn T, Dumontier M. Making Digital Artifacts on the Web Verifiable and Reliable Ieee Transactions On Knowledge and Data Engineering. 27: 2390-2400. DOI: 10.1109/Tkde.2015.2419657 |
0.357 |
|
| 2014 |
González AR, Callahan A, Cruz-Toledo J, Garcia A, Egaña Aranguren M, Dumontier M, Wilkinson MD. Automatically exposing OpenLifeData via SADI semantic Web Services. Journal of Biomedical Semantics. 5: 46. PMID 25937881 DOI: 10.1186/2041-1480-5-46 |
0.373 |
|
| 2014 |
Boyce RD, Ryan PB, Norén GN, Schuemie MJ, Reich C, Duke J, Tatonetti NP, Trifirò G, Harpaz R, Overhage JM, Hartzema AG, Khayter M, Voss EA, Lambert CG, Huser V, ... Dumontier M, et al. Bridging islands of information to establish an integrated knowledge base of drugs and health outcomes of interest. Drug Safety. 37: 557-67. PMID 24985530 DOI: 10.1007/S40264-014-0189-0 |
0.37 |
|
| 2014 |
Dumontier M, Baker CJ, Baran J, Callahan A, Chepelev L, Cruz-Toledo J, Del Rio NR, Duck G, Furlong LI, Keath N, Klassen D, McCusker JP, Queralt-Rosinach N, Samwald M, Villanueva-Rosales N, et al. The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. Journal of Biomedical Semantics. 5: 14. PMID 24602174 DOI: 10.1186/2041-1480-5-14 |
0.412 |
|
| 2014 |
Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, ... ... Dumontier M, et al. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5: 5. PMID 24495517 DOI: 10.1186/2041-1480-5-5 |
0.398 |
|
| 2014 |
Aranguren ME, Fernández-Breis JT, Dumontier M. Special issue on Linked Data for Health Care and the Life Sciences Social Work. 5: 99-100. DOI: 10.3233/Sw-130115 |
0.401 |
|
| 2014 |
Soldatova LN, Rocca-Serra P, Dumontier M, Shah NH. Selected papers from the 16th annual Bio-Ontologies Special Interest Group Meeting Journal of Biomedical Semantics. 5. DOI: 10.1186/2041-1480-5-S1-I1 |
0.394 |
|
| 2013 |
Callahan A, Cruz-Toledo J, Dumontier M. Ontology-Based Querying with Bio2RDF's Linked Open Data. Journal of Biomedical Semantics. 4: S1. PMID 23735196 DOI: 10.1186/2041-1480-4-S1-S1 |
0.432 |
|
| 2013 |
Soldatova LN, Sansone SA, Dumontier M, Shah NH. Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting. Journal of Biomedical Semantics. 4: I1. PMID 23735191 DOI: 10.1186/2041-1480-4-S1-I1 |
0.405 |
|
| 2013 |
Vandervalk B, McCarthy EL, Cruz-Toledo J, Klein A, Baker CJ, Dumontier M, Wilkinson MD. The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions. Jmir Research Protocols. 2: e14. PMID 23612187 DOI: 10.2196/Resprot.2315 |
0.369 |
|
| 2013 |
Hoehndorf R, Dumontier M, Gkoutos GV. Evaluation of research in biomedical ontologies Briefings in Bioinformatics. 14: 696-712. PMID 22962340 DOI: 10.1093/Bib/Bbs053 |
0.371 |
|
| 2013 |
Duque-Ramos A, FernáNdez-Breis JT, Iniesta M, Dumontier M, Aranguren ME, Schulz S, Aussenac-Gilles N, Stevens R. Evaluation of the OQuaRE framework for ontology quality Expert Systems With Applications. 40: 2696-2703. DOI: 10.1016/J.Eswa.2012.11.004 |
0.332 |
|
| 2012 |
Hoehndorf R, Dumontier M, Gkoutos GV. Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics Bioinformatics. 28: 2169-2175. PMID 22711793 DOI: 10.1093/Bioinformatics/Bts350 |
0.348 |
|
| 2012 |
Soldatova LN, Sansone SA, Dumontier M, Shah NH. Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting. Journal of Biomedical Semantics. 3: I1. PMID 22541591 DOI: 10.1186/2041-1480-3-S1-I1 |
0.425 |
|
| 2012 |
Cruz-Toledo J, McKeague M, Zhang X, Giamberardino A, McConnell E, Francis T, DeRosa MC, Dumontier M. Aptamer Base: a collaborative knowledge base to describe aptamers and SELEX experiments. Database : the Journal of Biological Databases and Curation. 2012: bas006. PMID 22434840 DOI: 10.1093/Database/Bas006 |
0.382 |
|
| 2012 |
Samwald M, Coulet A, Huerga I, Powers RL, Luciano JS, Freimuth RR, Whipple F, Pichler E, Prud'hommeaux E, Dumontier M, Marshall MS. Semantically enabling pharmacogenomic data for the realization of personalized medicine. Pharmacogenomics. 13: 201-12. PMID 22256869 DOI: 10.2217/Pgs.11.179 |
0.367 |
|
| 2012 |
Nolin MA, Dumontier M, Belleau F, Corbeil J. Building an HIV data mashup using Bio2RDF Briefings in Bioinformatics. 13: 98-106. PMID 22223742 DOI: 10.1093/Bib/Bbr003 |
0.312 |
|
| 2012 |
Chepelev LL, Hastings J, Ennis M, Steinbeck C, Dumontier M. Self-organizing ontology of biochemically relevant small molecules. Bmc Bioinformatics. 13: 3. PMID 22221313 DOI: 10.1186/1471-2105-13-3 |
0.392 |
|
| 2012 |
Dumontier M, Wild DJ. Linked Data in Drug Discovery Ieee Internet Computing. 16: 68-71. DOI: 10.1109/Mic.2012.122 |
0.346 |
|
| 2011 |
Courtot M, Juty N, Knüpfer C, Waltemath D, Zhukova A, Dräger A, Dumontier M, Finney A, Golebiewski M, Hastings J, Hoops S, Keating S, Kell DB, Kerrien S, Lawson J, et al. Controlled vocabularies and semantics in systems biology. Molecular Systems Biology. 7: 543. PMID 22027554 DOI: 10.1038/Msb.2011.77 |
0.311 |
|
| 2011 |
Hastings J, Chepelev L, Willighagen E, Adams N, Steinbeck C, Dumontier M. The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. Plos One. 6: e25513. PMID 21991315 DOI: 10.1371/Journal.Pone.0025513 |
0.409 |
|
| 2011 |
Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV. Integrating systems biology models and biomedical ontologies. Bmc Systems Biology. 5: 124. PMID 21835028 DOI: 10.1186/1752-0509-5-124 |
0.35 |
|
| 2011 |
Chepelev LL, Riazanov A, Kouznetsov A, Low HS, Dumontier M, Baker CJ. Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics. Bmc Bioinformatics. 12: 303. PMID 21791100 DOI: 10.1186/1471-2105-12-303 |
0.366 |
|
| 2011 |
Hoehndorf R, Dumontier M, Oellrich A, Rebholz-Schuhmann D, Schofield PN, Gkoutos GV. Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. Plos One. 6: e22006. PMID 21789201 DOI: 10.1371/Journal.Pone.0022006 |
0.407 |
|
| 2011 |
Callahan A, Dumontier M, Shah NH. HyQue: evaluating hypotheses using Semantic Web technologies. Journal of Biomedical Semantics. 2: S3. PMID 21624158 DOI: 10.1186/2041-1480-2-S2-S3 |
0.371 |
|
| 2011 |
Coulet A, Garten Y, Dumontier M, Altman RB, Musen MA, Shah NH. Integration and publication of heterogeneous text-mined relationships on the Semantic Web. Journal of Biomedical Semantics. 2: S10. PMID 21624156 DOI: 10.1186/2041-1480-2-S2-S10 |
0.329 |
|
| 2011 |
Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denney CK, Domarew C, Gambet T, Harland L, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Lebo T, Marshall SM, ... ... Dumontier M, et al. The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. Journal of Biomedical Semantics. 2: S1. PMID 21624155 DOI: 10.1186/2041-1480-2-S2-S1 |
0.354 |
|
| 2011 |
Chepelev LL, Dumontier M. Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration Journal of Cheminformatics. 3: 20-20. PMID 21595881 DOI: 10.1186/1758-2946-3-20 |
0.395 |
|
| 2011 |
Chepelev LL, Dumontier M. Semantic Web integration of Cheminformatics resources with the SADI framework Journal of Cheminformatics. 3: 16-16. PMID 21575200 DOI: 10.1186/1758-2946-3-16 |
0.389 |
|
| 2011 |
Hoehndorf R, Dumontier M, Oellrich A, Wimalaratne S, Rebholz-Schuhmann D, Schofield P, Gkoutos GV. A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinformatics (Oxford, England). 27: 1001-8. PMID 21343142 DOI: 10.1093/Bioinformatics/Btr058 |
0.413 |
|
| 2011 |
Dumontier M. Taking flight with OWL2 Social Work. 2: 67-70. DOI: 10.3233/Sw-2011-0048 |
0.379 |
|
| 2011 |
Gawronski A, Dumontier M. Semantic 3D Media and Content: MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets Computers & Graphics. 35: 823-830. DOI: 10.1016/J.Cag.2011.03.039 |
0.342 |
|
| 2010 |
Samwald M, Dumontier M, Zhao J, Luciano JS, Marshall MS, Cheung K. Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data. Chinese Medicine. 5: 43. PMID 21167050 DOI: 10.1186/1749-8546-5-43 |
0.357 |
|
| 2010 |
Hoehndorf R, Oellrich A, Dumontier M, Kelso J, Rebholz-Schuhmann D, Herre H. Relations as patterns: bridging the gap between OBO and OWL. Bmc Bioinformatics. 11: 441. PMID 20807438 DOI: 10.1186/1471-2105-11-441 |
0.37 |
|
| 2010 |
Cruz-Toledo J, Dumontier M, Parisien M, Major F. RKB: a Semantic Web knowledge base for RNA. Journal of Biomedical Semantics. 1: S2. PMID 20626922 DOI: 10.1186/2041-1480-1-S1-S2 |
0.368 |
|
| 2010 |
Dumontier M. Building an effective Semantic Web for health care and the life sciences Social Work. 1: 131-135. DOI: 10.3233/Sw-2010-0018 |
0.396 |
|
| 2010 |
Nolin M, Corbeil J, Lamontagne L, Dumontier M. Bio2RDF: Convert, Provide And Reuse. Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5060.1 |
0.425 |
|
| 2010 |
Dumontier M, Ferres L, Villanueva-Rosales N. Modeling and querying graphical representations of statistical data Journal of Web Semantics. 8: 241-254. DOI: 10.1016/J.Websem.2009.12.002 |
0.336 |
|
| 2009 |
Dumontier M, Villanueva-Rosales N. Towards pharmacogenomics knowledge discovery with the semantic web Briefings in Bioinformatics. 10: 153-163. PMID 19240125 DOI: 10.1093/Bib/Bbn056 |
0.376 |
|
| 2008 |
Pitre S, North C, Alamgir M, Jessulat M, Chan A, Luo X, Green JR, Dumontier M, Dehne F, Golshani A. Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences. Nucleic Acids Research. 36: 4286-94. PMID 18586826 DOI: 10.1093/Nar/Gkn390 |
0.343 |
|
| 2008 |
Villanueva-Rosales N, Dumontier M. yOWL: An ontology-driven knowledge base for yeast biologists Journal of Biomedical Informatics. 41: 779-789. PMID 18562252 DOI: 10.1016/J.Jbi.2008.05.001 |
0.405 |
|
| 2008 |
Pitre S, Alamgir M, Green JR, Dumontier M, Dehne F, Golshani A. Computational methods for predicting protein-protein interactions. Advances in Biochemical Engineering/Biotechnology. 110: 247-67. PMID 18202838 DOI: 10.1007/10_2007_089 |
0.31 |
|
| 2006 |
Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW. Domain-based small molecule binding site annotation. Bmc Bioinformatics. 7: 152. PMID 16545112 DOI: 10.1186/1471-2105-7-152 |
0.722 |
|
| 2005 |
Feldman HJ, Dumontier M, Ling S, Haider N, Hogue CW. CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules. Febs Letters. 579: 4685-91. PMID 16098521 DOI: 10.1016/J.Febslet.2005.07.039 |
0.715 |
|
| 2005 |
Dumontier M, Yao R, Feldman HJ, Hogue CW. Armadillo: domain boundary prediction by amino acid composition. Journal of Molecular Biology. 350: 1061-73. PMID 15978619 DOI: 10.1016/J.Jmb.2005.05.037 |
0.7 |
|
| 2005 |
Alex AT, Dumontier M, Rose JS, Hogue CW. Hardware-accelerated protein identification for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 833-7. PMID 15723443 DOI: 10.1002/Rcm.1853 |
0.577 |
|
| 2005 |
Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, ... Dumontier MJ, ... ... Dumontier MR, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research. 33: D418-24. PMID 15608229 DOI: 10.1093/Nar/Gki051 |
0.728 |
|
| 2002 |
Dumontier M, Michalickova K, Hogue CW. Species-specific protein sequence and fold optimizations. Bmc Bioinformatics. 3: 39. PMID 12487631 DOI: 10.1186/1471-2105-3-39 |
0.564 |
|
| 2002 |
Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW. SeqHound: biological sequence and structure database as a platform for bioinformatics research. Bmc Bioinformatics. 3: 32. PMID 12401134 DOI: 10.1186/1471-2105-3-32 |
0.668 |
|
| 2002 |
Dumontier M, Hogue CW. NBLAST: a cluster variant of BLAST for NxN comparisons. Bmc Bioinformatics. 3: 13. PMID 12019022 DOI: 10.1186/1471-2105-3-13 |
0.558 |
|
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