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Daan Noordermeer, Ph.D. - Publications

Affiliations: 
Centre de Génétique Moleculaire CNRS, Paris, Île-de-France, France 
Area:
chromatin organization
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Monteagudo-Sánchez A, Richard Albert J, Scarpa M, Noordermeer D, Greenberg MVC. The impact of the embryonic DNA methylation program on CTCF-mediated genome regulation. Nucleic Acids Research. PMID 39180406 DOI: 10.1093/nar/gkae724  0.35
2024 Farhadova S, Ghousein A, Charon F, Surcis C, Gomez-Velazques M, Roidor C, Di Michele F, Borensztein M, De Sario A, Esnault C, Noordermeer D, Moindrot B, Feil R. The long non-coding RNA Meg3 mediates imprinted gene expression during stem cell differentiation. Nucleic Acids Research. PMID 38613389 DOI: 10.1093/nar/gkae247  0.412
2023 da Costa-Nunes JA, Noordermeer D. TADs: Dynamic structures to create stable regulatory functions. Current Opinion in Structural Biology. 81: 102622. PMID 37302180 DOI: 10.1016/j.sbi.2023.102622  0.401
2023 Moniot-Perron L, Moindrot B, Manceau L, Edouard J, Jaszczyszyn Y, Gilardi-Hebenstreit P, Hernandez C, Bloyer S, Noordermeer D. The Drosophila Fab-7 boundary modulates Abd-B gene activity by guiding an inversion of collinear chromatin organization and alternate promoter use. Cell Reports. 42: 111967. PMID 36640345 DOI: 10.1016/j.celrep.2022.111967  0.568
2022 Miranda M, Noordermeer D, Moindrot B. Detection of Allele-Specific 3D Chromatin Interactions Using High-Resolution In-Nucleus 4C-seq. Methods in Molecular Biology (Clifton, N.J.). 2532: 15-33. PMID 35867243 DOI: 10.1007/978-1-0716-2497-5_2  0.301
2022 Segueni J, Noordermeer D. CTCF: A misguided jack-of-all-trades in cancer cells. Computational and Structural Biotechnology Journal. 20: 2685-2698. PMID 35685367 DOI: 10.1016/j.csbj.2022.05.044  0.338
2022 Dos Santos M, Backer S, Auradé F, Wong MM, Wurmser M, Pierre R, Langa F, Do Cruzeiro M, Schmitt A, Concordet JP, Sotiropoulos A, Jeffrey Dilworth F, Noordermeer D, Relaix F, Sakakibara I, et al. A fast Myosin super enhancer dictates muscle fiber phenotype through competitive interactions with Myosin genes. Nature Communications. 13: 1039. PMID 35210422 DOI: 10.1038/s41467-022-28666-1  0.412
2020 Chang LH, Noordermeer D. Of Dots and Stripes: The Morse Code of Micro-C Reveals the Ultrastructure of Transcriptional and Architectural Mammalian 3D Genome Organization. Molecular Cell. 78: 376-378. PMID 32386540 DOI: 10.1016/J.Molcel.2020.04.021  0.464
2020 Noordermeer D, Feil R. Differential 3D chromatin organization and gene activity in genomic imprinting. Current Opinion in Genetics & Development. 61: 17-24. PMID 32299027 DOI: 10.1016/J.Gde.2020.03.004  0.535
2020 Noordermeer D. 3D genome organization: setting the stage and introducing its players. Briefings in Functional Genomics. 19: 69-70. PMID 32239212 DOI: 10.1093/Bfgp/Elaa006  0.315
2019 Chang LH, Ghosh S, Noordermeer D. TADs and their borders: free movement or building a wall? Journal of Molecular Biology. PMID 31887284 DOI: 10.1016/J.Jmb.2019.11.025  0.474
2019 Llères D, Moindrot B, Pathak R, Piras V, Matelot M, Pignard B, Marchand A, Poncelet M, Perrin A, Tellier V, Feil R, Noordermeer D. CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains. Genome Biology. 20: 272. PMID 31831055 DOI: 10.1186/S13059-019-1896-8  0.532
2019 Shukron O, Piras V, Noordermeer D, Holcman D. Statistics of chromatin organization during cell differentiation revealed by heterogeneous cross-linked polymers. Nature Communications. 10: 2626. PMID 31201308 DOI: 10.1038/S41467-019-10402-X  0.459
2019 Greenberg MVC, Teissandier A, Walter M, Noordermeer D, Bourc'his D. Dynamic enhancer partitioning instructs activation of a growth-related gene during exit from naïve pluripotency. Elife. 8. PMID 30990414 DOI: 10.7554/Elife.44057  0.446
2018 Sobecki M, Souaid C, Boulay J, Guerineau V, Noordermeer D, Crabbe L. MadID, a Versatile Approach to Map Protein-DNA Interactions, Highlights Telomere-Nuclear Envelope Contact Sites in Human Cells. Cell Reports. 25: 2891-2903.e5. PMID 30517874 DOI: 10.1016/J.Celrep.2018.11.027  0.322
2017 Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D. Large scale genomic reorganization of topological domains at the HoxD locus. Genome Biology. 18: 149. PMID 28784160 DOI: 10.1186/S13059-017-1278-Z  0.787
2017 Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P, Gilardi-Hebenstreit P. Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements. Plos Genetics. 13: e1006903. PMID 28749941 DOI: 10.1371/Journal.Pgen.1006903  0.43
2016 Matelot M, Noordermeer D. Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq). Methods in Molecular Biology (Clifton, N.J.). 1480: 223-41. PMID 27659989 DOI: 10.1007/978-1-4939-6380-5_20  0.389
2016 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase. Nature. PMID 27409805 DOI: 10.1038/Nature18962  0.456
2015 Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D, Noordermeer D. Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain. Proceedings of the National Academy of Sciences of the United States of America. 112: 4672-7. PMID 25825760 DOI: 10.1073/Pnas.1504783112  0.739
2014 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Enhancer loops appear stable during development and are associated with paused polymerase. Nature. 512: 96-100. PMID 25043061 DOI: 10.1038/Nature13417  0.51
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci. Elife. 3: e02557. PMID 24843030 DOI: 10.7554/Elife.02557  0.837
2014 Woltering JM, Noordermeer D, Leleu M, Duboule D. Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits. Plos Biology. 12: e1001773. PMID 24465181 DOI: 10.1371/Journal.Pbio.1001773  0.722
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Author response: Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci Elife. DOI: 10.7554/Elife.02557.024  0.783
2014 Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D. Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci Elife. 2014. DOI: 10.7554/eLife.02557  0.791
2013 Noordermeer D, Duboule D. Chromatin looping and organization at developmentally regulated gene loci. Wiley Interdisciplinary Reviews. Developmental Biology. 2: 615-30. PMID 24014450 DOI: 10.1002/Wdev.103  0.727
2013 Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F, Duboule D. A switch between topological domains underlies HoxD genes collinearity in mouse limbs. Science (New York, N.Y.). 340: 1234167. PMID 23744951 DOI: 10.1126/Science.1234167  0.779
2013 Noordermeer D, Duboule D. Chromatin architectures and Hox gene collinearity. Current Topics in Developmental Biology. 104: 113-48. PMID 23587240 DOI: 10.1016/B978-0-12-416027-9.00004-8  0.73
2012 Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A. Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method Methods in Molecular Biology. 786: 211-225. PMID 21938629 DOI: 10.1007/978-1-61779-292-2_13  0.464
2011 Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W, Duboule D. The dynamic architecture of Hox gene clusters. Science (New York, N.Y.). 334: 222-5. PMID 21998387 DOI: 10.1126/Science.1207194  0.816
2011 Noordermeer D, de Wit E, Klous P, van de Werken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de Laat W. Variegated gene expression caused by cell-specific long-range DNA interactions. Nature Cell Biology. 13: 944-51. PMID 21706023 DOI: 10.1038/Ncb2278  0.816
2008 Noordermeer D, De Laat W. Joining the loops: β-globin gene regulation Iubmb Life. 60: 824-833. PMID 18767169 DOI: 10.1002/Iub.129  0.797
2008 Noordermeer D, Branco MR, Splinter E, Klous P, Van Ijcken W, Swagemakers S, Koutsourakis M, Van Der Spek P, Pombo A, De Laat W. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated β-globin locus control region Plos Genetics. 4. PMID 18369441 DOI: 10.1371/Journal.Pgen.1000016  0.809
2008 de Laat W, Klous P, Kooren J, Noordermeer D, Palstra RJ, Simonis M, Splinter E, Grosveld F. Three-dimensional organization of gene expression in erythroid cells. Current Topics in Developmental Biology. 82: 117-39. PMID 18282519 DOI: 10.1016/S0070-2153(07)00005-1  0.812
2008 Noordermeer D, Branco MR, Splinter E, Klous P, van IJcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W. Correction: Transcription and Chromatin Organization of a Housekeeping Gene Cluster Containing an Integrated β-Globin Locus Control Region Plos Genetics. 4. DOI: 10.1371/annotation/b4241c5d-5403-4797-8579-913ef9be560b  0.448
2006 Bok JW, Noordermeer D, Kale SP, Keller NP. Secondary metabolic gene cluster silencing in Aspergillus nidulans. Molecular Microbiology. 61: 1636-45. PMID 16968230 DOI: 10.1111/J.1365-2958.2006.05330.X  0.508
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