| Year |
Citation |
Score |
| 2024 |
Sun S, Ting CT, Wu CI. Selection with two alleles of X-linkage and its application to the fitness component analysis of OdsH in Drosophila. G3 (Bethesda, Md.). PMID 39001870 DOI: 10.1093/g3journal/jkae157 |
0.671 |
|
| 2021 |
Ruan Y, Luo Z, Tang X, Li G, Wen H, He X, Lu X, Lu J, Wu CI. On the founder effect in COVID-19 outbreaks: how many infected travelers may have started them all? National Science Review. 8: nwaa246. PMID 34676089 DOI: 10.1093/nsr/nwaa246 |
0.341 |
|
| 2021 |
Wu CI, Wen H, Lu J, Su XD, Hughes AC, Zhai W, Chen C, Chen H, Li M, Song S, Qian Z, Wang Q, Chen B, Guo Z, Ruan Y, et al. On the origin of SARS-CoV-2-The blind watchmaker argument. Science China. Life Sciences. PMID 34269976 DOI: 10.1007/s11427-021-1972-1 |
0.365 |
|
| 2020 |
Wang X, He Z, Shi S, Wu C. Genes and speciation: is it time to abandon the biological species concept? National Science Review. 7: 1387-1397. DOI: 10.1093/Nsr/Nwz220 |
0.324 |
|
| 2019 |
Chen Y, Shen Y, Lin P, Tong D, Zhao Y, Allesina S, Shen X, Wu CI. Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May-Wigner theory. National Science Review. 6: 1176-1188. PMID 34691996 DOI: 10.1093/nsr/nwz076 |
0.475 |
|
| 2019 |
Chen Q, Lan A, Shen X, Wu CI. Molecular evolution in small steps under prevailing negative selection - A nearly-universal rule of codon substitution. Genome Biology and Evolution. PMID 31504473 DOI: 10.1093/gbe/evz192 |
0.343 |
|
| 2019 |
He Z, Li X, Yang M, Wang X, Zhong C, Duke NC, Wu CI, Shi S. Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa. National Science Review. 6: 275-288. PMID 31258952 DOI: 10.1093/nsr/nwy078 |
0.434 |
|
| 2019 |
Chen Q, He Z, Lan A, Shen X, Wen H, Wu CI. Molecular evolution in large steps - Codon substitutions under positive selection. Molecular Biology and Evolution. PMID 31077325 DOI: 10.1093/molbev/msz108 |
0.314 |
|
| 2019 |
Chen B, Shi Z, Chen Q, Shen X, Shibata D, Wen H, Wu CI. Tumorigenesis as the paradigm of quasi-neutral molecular evolution. Molecular Biology and Evolution. PMID 30912799 DOI: 10.1093/molbev/msz075 |
0.32 |
|
| 2019 |
Li J, Jiang L, Wu CI, Lu X, Fang S, Ting CT. Small segmental duplications in Drosophila - High rate of emergence and elimination. Genome Biology and Evolution. PMID 30689862 DOI: 10.1093/gbe/evz011 |
0.56 |
|
| 2019 |
Chen Y, Shen Y, Lin P, Tong D, Zhao Y, Allesina S, Shen X, Wu C. Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May–Wigner theory National Science Review. 6: 1176-1188. DOI: 10.1093/Nsr/Nwz076 |
0.457 |
|
| 2019 |
Wu C, Xu A. Backward, upside down and inside out — the regulatory evolution of vertebrates National Science Review. 6: 1004-1004. DOI: 10.1093/Nsr/Nwz067 |
0.321 |
|
| 2018 |
Lu GA, Zhao Y, Lan A, Shi S, Liufu Z, Tang T, Xu J, Shen X, Wu CI. Death of new microRNA genes in Drosophila via gradual loss of fitness advantages. Genome Research. PMID 30049791 DOI: 10.1101/gr.233809.117 |
0.356 |
|
| 2018 |
Lu GA, Zhao Y, Liufu Z, Wu CI. On the possibility of death of new genes - evidence from the deletion of de novo microRNAs. Bmc Genomics. 19: 388. PMID 29792159 DOI: 10.1186/s12864-018-4755-1 |
0.337 |
|
| 2018 |
Zhao Y, Lin P, Liufu Z, Yang H, Lyu Y, Shen X, Wu CI, Tang T. Regulation of large number of weak targets - New insights from twin-microRNAs. Genome Biology and Evolution. PMID 29688430 DOI: 10.1093/gbe/evy079 |
0.554 |
|
| 2018 |
Wang H, Chen Y, Tong D, Ling S, Hu Z, Tao Y, Lu X, Wu C. Is the evolution in tumors Darwinian or non-Darwinian? National Science Review. 5: 15-17. DOI: 10.1093/Nsr/Nwx076 |
0.415 |
|
| 2017 |
Xu S, He Z, Zhang Z, Guo Z, Guo W, Lyu H, Li J, Yang M, Du Z, Huang Y, Zhou R, Zhong C, Boufford DE, Lerdau M, Wu CI, et al. The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing. National Science Review. 4: 721-734. PMID 31258950 DOI: 10.1093/Nsr/Nwx065 |
0.45 |
|
| 2017 |
Xu J, Peng X, Chen Y, Zhang Y, Ma Q, Liang L, Carter AC, Lu X, Wu CI. Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity. Elife. 6. PMID 29251591 DOI: 10.7554/Elife.28070 |
0.523 |
|
| 2017 |
Yang Z, Jia M, Liu G, Hao H, Chen L, Li G, Liu S, Li Y, Wu CI, Lu X, Wang S. Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model. Plos One. 12: e0187551. PMID 29117265 DOI: 10.1371/journal.pone.0187551 |
0.304 |
|
| 2017 |
Guo Z, Li X, He Z, Yang Y, Wang W, Zhong C, Greenberg AJ, Wu CI, Duke NC, Shi S. Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses. Global Change Biology. PMID 29087007 DOI: 10.1111/gcb.13968 |
0.324 |
|
| 2017 |
Lyu H, He Z, Wu CI, Shi S. Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes. The New Phytologist. PMID 28960318 DOI: 10.1111/nph.14784 |
0.326 |
|
| 2017 |
Liufu Z, Zhao Y, Guo L, Miao G, Xiao J, Lyu Y, Chen Y, Shi S, Tang T, Wu CI. Redundant and incoherent regulations of multiple phenotypes suggest microRNAs' role in stability control. Genome Research. PMID 28904014 DOI: 10.1101/Gr.222505.117 |
0.639 |
|
| 2017 |
Chen Y, Tong D, Wu CI. A new formulation of random genetic drift and its application to the evolution of cell populations. Molecular Biology and Evolution. PMID 28525580 DOI: 10.1093/Molbev/Msx161 |
0.469 |
|
| 2017 |
Chen Y, Wen H, Wu CI. A mathematical theory of the transcription repression (TR) therapy of cancer - whether and how it may work. Oncotarget. PMID 28454100 DOI: 10.18632/Oncotarget.16957 |
0.425 |
|
| 2017 |
Yang M, He Z, Huang Y, Lu L, Yan Y, Hong L, Shen H, Liu Y, Guo Q, Jiang L, Zhang Y, Greenberg AJ, Zhou R, Ge X, Wu CI, et al. The emergence of the hyper-invasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics. Molecular Ecology. PMID 28370790 DOI: 10.1111/mec.14124 |
0.423 |
|
| 2017 |
Li C, Hou Y, Xu J, Zhang A, Liu Z, Qi F, Yang Z, Chen K, Liu S, Huang H, Wang Q, Dong J, Wu CI, Lu X. A direct test of selection in cell populations using the diversity in gene expression within tumors. Molecular Biology and Evolution. PMID 28369576 DOI: 10.1093/Molbev/Msx115 |
0.323 |
|
| 2017 |
Yang M, He Z, Shi S, Wu CI. Can genomic data alone tell us whether speciation happened with gene flow? Molecular Ecology. PMID 28345182 DOI: 10.1111/mec.14117 |
0.44 |
|
| 2017 |
Xu S, He Z, Guo Z, Zhang Z, Wyckoff GJ, Greenberg A, Wu CI, Shi S. Genome-wide convergence during evolution of mangroves from woody plants. Molecular Biology and Evolution. PMID 28087771 DOI: 10.1093/molbev/msw277 |
0.712 |
|
| 2017 |
Xu J, Peng X, Chen Y, Zhang Y, Ma Q, Liang L, Carter AC, Lu X, Wu C. Author response: Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity Elife. DOI: 10.7554/Elife.28070.027 |
0.461 |
|
| 2017 |
Zhang Y, Shen X, Li Y, Zhu T, Tao Y, Li T, Wang D, Li X, Ma Q, Lu X, Wang H, Wu C. Abstract 514: Genetic load in cancer cell populations Cancer Research. 77: 514-514. DOI: 10.1158/1538-7445.Am2017-514 |
0.49 |
|
| 2016 |
Wu CI, Wang HY, Ling S, Lu X. The Ecology and Evolution of Cancer: The Ultra-Microevolutionary Process. Annual Review of Genetics. PMID 27686281 DOI: 10.1146/Annurev-Genet-112414-054842 |
0.319 |
|
| 2016 |
Yu L, Wang GD, Ruan J, Chen YB, Yang CP, Cao X, Wu H, Liu YH, Du ZL, Wang XP, Yang J, Cheng SC, Zhong L, Wang L, Wang X, ... ... Wu CI, et al. Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation. Nature Genetics. PMID 27399969 DOI: 10.1038/Ng.3615 |
0.374 |
|
| 2016 |
Wang K, Ma Q, Jiang L, Lai S, Lu X, Hou Y, Wu CI, Ruan J. Ultra-precise detection of mutations by droplet-based amplification of circularized DNA. Bmc Genomics. 17: 214. PMID 26960407 DOI: 10.1186/s12864-016-2480-1 |
0.313 |
|
| 2015 |
Wang GD, Zhai W, Yang HC, Wang L, Zhong L, Liu YH, Fan RX, Yin TT, Zhu CL, Poyarkov AD, Irwin DM, Hytönen MK, Lohi H, Wu CI, Savolainen P, et al. Out of southern East Asia: the natural history of domestic dogs across the world. Cell Research. PMID 26667385 DOI: 10.1038/Cr.2015.147 |
0.312 |
|
| 2015 |
Ling S, Hu Z, Yang Z, Yang F, Li Y, Lin P, Chen K, Dong L, Cao L, Tao Y, Hao L, Chen Q, Gong Q, Wu D, Li W, ... Wu CI, et al. Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 26561581 DOI: 10.1073/Pnas.1519556112 |
0.783 |
|
| 2014 |
Wang GD, Fan RX, Zhai W, Liu F, Wang L, Zhong L, Wu H, Yang HC, Wu SF, Zhu CL, Li Y, Gao Y, Ge RL, Wu CI, Zhang YP. Genetic convergence in the adaptation of dogs and humans to the high-altitude environment of the tibetan plateau. Genome Biology and Evolution. 6: 2122-8. PMID 25091388 DOI: 10.1093/Gbe/Evu162 |
0.36 |
|
| 2014 |
Lyu Y, Shen Y, Li H, Chen Y, Guo L, Zhao Y, Hungate E, Shi S, Wu CI, Tang T. New microRNAs in Drosophila--birth, death and cycles of adaptive evolution. Plos Genetics. 10: e1004096. PMID 24465220 DOI: 10.1371/Journal.Pgen.1004096 |
0.761 |
|
| 2013 |
Zhao Y, Ren JL, Wang MY, Zhang ST, Liu Y, Li M, Cao YB, Zu HY, Chen XC, Wu CI, Nevo E, Chen XQ, Du JZ. Codon 104 variation of p53 gene provides adaptive apoptotic responses to extreme environments in mammals of the Tibet plateau. Proceedings of the National Academy of Sciences of the United States of America. 110: 20639-44. PMID 24297887 DOI: 10.1073/pnas.1320369110 |
0.32 |
|
| 2013 |
Ruan J, Jiang L, Chong Z, Gong Q, Li H, Li C, Tao Y, Zheng C, Zhai W, Turissini D, Cannon CH, Lu X, Wu CI. Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology. Bmc Genomics. 14: 711. PMID 24134808 DOI: 10.1186/1471-2164-14-711 |
0.709 |
|
| 2013 |
Chong Z, Zhai W, Li C, Gao M, Gong Q, Ruan J, Li J, Jiang L, Lv X, Hungate E, Wu CI. The evolution of small insertions and deletions in the coding genes of Drosophila melanogaster. Molecular Biology and Evolution. 30: 2699-708. PMID 24077769 DOI: 10.1093/Molbev/Mst167 |
0.782 |
|
| 2013 |
Xu J, Zhang R, Shen Y, Liu G, Lu X, Wu CI. The evolution of evolvability in microRNA target sites in vertebrates. Genome Research. 23: 1810-6. PMID 24077390 DOI: 10.1101/Gr.148916.112 |
0.43 |
|
| 2013 |
Hungate EA, Earley EJ, Boussy IA, Turissini DA, Ting CT, Moran JR, Wu ML, Wu CI, Jones CD. A locus in Drosophila sechellia affecting tolerance of a host plant toxin. Genetics. 195: 1063-75. PMID 24037270 DOI: 10.1534/Genetics.113.154773 |
0.765 |
|
| 2013 |
Zheng C, Miao X, Li Y, Huang Y, Ruan J, Ma X, Wang L, Wu CI, Cai J. Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing. Bioinformatics (Oxford, England). 29: 2813-21. PMID 23962614 DOI: 10.1093/Bioinformatics/Btt481 |
0.335 |
|
| 2013 |
He Z, Li X, Ling S, Fu YX, Hungate E, Shi S, Wu CI. Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications. Bmc Genomics. 14: 535. PMID 23919637 DOI: 10.1186/1471-2164-14-535 |
0.74 |
|
| 2013 |
Wang GD, Zhai W, Yang HC, Fan RX, Cao X, Zhong L, Wang L, Liu F, Wu H, Cheng LG, Poyarkov AD, Poyarkov NA, Tang SS, Zhao WM, Gao Y, ... Wu CI, et al. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nature Communications. 4: 1860. PMID 23673645 DOI: 10.1038/Ncomms2814 |
0.385 |
|
| 2012 |
Fang S, Yukilevich R, Chen Y, Turissini DA, Zeng K, Boussy IA, Wu CI. Incompatibility and competitive exclusion of genomic segments between sibling Drosophila species. Plos Genetics. 8: e1002795. PMID 22761593 DOI: 10.1371/Journal.Pgen.1002795 |
0.802 |
|
| 2012 |
Werren JH, Nur U, Wu CI. Selfish genetic elements. Trends in Ecology & Evolution. 3: 297-302. PMID 21227262 DOI: 10.1016/0169-5347(88)90105-X |
0.325 |
|
| 2011 |
Shen Y, Lv Y, Huang L, Liu W, Wen M, Tang T, Zhang R, Hungate E, Shi S, Wu CI. Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs. Proceedings of the National Academy of Sciences of the United States of America. 108: 15942-7. PMID 21911382 DOI: 10.1073/Pnas.1110098108 |
0.774 |
|
| 2011 |
Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, Zhai W, Cai J, Ling S, Gong Q, Chong Z, Qu Z, Li Q, Liu J, Yang J, Zheng C, ... ... Wu CI, et al. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proceedings of the National Academy of Sciences of the United States of America. 108: 12042-7. PMID 21730188 DOI: 10.1073/Pnas.1108715108 |
0.564 |
|
| 2011 |
He Z, Zhai W, Wen H, Tang T, Wang Y, Lu X, Greenberg AJ, Hudson RR, Wu CI, Shi S. Two evolutionary histories in the genome of rice: the roles of domestication genes. Plos Genetics. 7: e1002100. PMID 21695282 DOI: 10.1371/Journal.Pgen.1002100 |
0.386 |
|
| 2011 |
Lu X, Wu CI. Sex, sex chromosomes and gene expression. Bmc Biology. 9: 30. PMID 21542945 DOI: 10.1186/1741-7007-9-30 |
0.379 |
|
| 2011 |
Zhou R, Ling S, Zhao W, Osada N, Chen S, Zhang M, He Z, Bao H, Zhong C, Zhang B, Lu X, Turissini D, Duke NC, Lu J, Shi S, ... Wu CI, et al. Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms. Molecular Biology and Evolution. 28: 2833-42. PMID 21504891 DOI: 10.1093/Molbev/Msr102 |
0.784 |
|
| 2010 |
Lu J, Shen Y, Carthew RW, Wang SM, Wu CI. Reply to evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics. 42: 9-10. PMID 25067898 DOI: 10.1038/Ng0110-9 |
0.501 |
|
| 2010 |
Tang T, Kumar S, Shen Y, Lu J, Wu ML, Shi S, Li WH, Wu CI. Adverse interactions between micro-RNAs and target genes from different species. Proceedings of the National Academy of Sciences of the United States of America. 107: 12935-40. PMID 20615957 DOI: 10.1073/Pnas.1007591107 |
0.622 |
|
| 2010 |
Lu X, Shapiro JA, Ting CT, Li Y, Li C, Xu J, Huang H, Cheng YJ, Greenberg AJ, Li SH, Wu ML, Shen Y, Wu CI. Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility. Genome Research. 20: 1097-102. PMID 20511493 DOI: 10.1101/Gr.076620.108 |
0.707 |
|
| 2009 |
Wu CI, Shen Y, Tang T. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Research. 19: 734-43. PMID 19411598 DOI: 10.1101/Gr.084640.108 |
0.446 |
|
| 2008 |
Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu CI, Shi S, Li J. Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. The Plant Cell. 20: 2946-59. PMID 19033526 DOI: 10.1105/tpc.108.060426 |
0.368 |
|
| 2008 |
Kohn MH, Shapiro J, Wu CI. Decoupled differentiation of gene expression and coding sequence among Drosophila populations. Genes & Genetic Systems. 83: 265-73. PMID 18670138 DOI: 10.1266/Ggs.83.265 |
0.615 |
|
| 2008 |
Zhou R, Gong X, Boufford D, Wu CI, Shi S. Testing a hypothesis of unidirectional hybridization in plants: observations on Sonneratia, Bruguiera and Ligularia. Bmc Evolutionary Biology. 8: 149. PMID 18485207 DOI: 10.1186/1471-2148-8-149 |
0.333 |
|
| 2008 |
Wang HY, Fu Y, McPeek MS, Lu X, Nuzhdin S, Xu A, Lu J, Wu ML, Wu CI. Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. Proceedings of the National Academy of Sciences of the United States of America. 105: 6362-7. PMID 18430800 DOI: 10.1073/Pnas.0711774105 |
0.338 |
|
| 2008 |
Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Molecular Biology and Evolution. 25: 929-38. PMID 18296702 DOI: 10.1093/Molbev/Msn040 |
0.456 |
|
| 2008 |
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nature Genetics. 40: 351-5. PMID 18278047 DOI: 10.1038/Ng.73 |
0.45 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Wu CI, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.782 |
|
| 2007 |
Zhou R, Zeng K, Wu W, Chen X, Yang Z, Shi S, Wu CI. Population genetics of speciation in nonmodel organisms: I. Ancestral polymorphism in mangroves. Molecular Biology and Evolution. 24: 2746-54. PMID 17906000 DOI: 10.1093/Molbev/Msm209 |
0.369 |
|
| 2007 |
Gojobori J, Tang H, Akey JM, Wu CI. Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 3907-12. PMID 17360451 DOI: 10.1073/pnas.0605565104 |
0.389 |
|
| 2007 |
Shapiro JA, Huang W, Zhang C, Hubisz MJ, Lu J, Turissini DA, Fang S, Wang HY, Hudson RR, Nielsen R, Chen Z, Wu CI. Adaptive genic evolution in the Drosophila genomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 2271-6. PMID 17284599 DOI: 10.1073/Pnas.0610385104 |
0.812 |
|
| 2007 |
Wang HY, Chien HC, Osada N, Hashimoto K, Sugano S, Gojobori T, Chou CK, Tsai SF, Wu CI, Shen CK. Rate of evolution in brain-expressed genes in humans and other primates. Plos Biology. 5: e13. PMID 17194215 DOI: 10.1371/journal.pbio.0050013 |
0.325 |
|
| 2006 |
Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI. Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. Plos Genetics. 2: e199. PMID 17112320 DOI: 10.1371/Journal.Pgen.0020199 |
0.517 |
|
| 2006 |
Osada N, Kohn MH, Wu CI. Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races. Molecular Biology and Evolution. 23: 1585-91. PMID 16754642 DOI: 10.1093/Molbev/Msl023 |
0.377 |
|
| 2006 |
Greenberg AJ, Moran JR, Wu CI. Proper control of genetic background with precise allele substitution: a comment on Coyne and Elwyn. Evolution; International Journal of Organic Evolution. 60: 623-5; discussion 62. PMID 16637506 DOI: 10.1111/J.0014-3820.2006.Tb01142.X |
0.626 |
|
| 2006 |
Liu X, Fu Y, Liu Z, Lin B, Xie Y, Liu Y, Xu Y, Lin J, Fan X, Dong M, Zeng K, Wu CI, Xu A. An ancient balanced polymorphism in a regulatory region of human major histocompatibility complex is retained in Chinese minorities but lost worldwide. American Journal of Human Genetics. 78: 393-400. PMID 16465617 DOI: 10.1086/500593 |
0.316 |
|
| 2006 |
Lu J, Tang T, Tang H, Huang J, Shi S, Wu CI. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends in Genetics : Tig. 22: 126-31. PMID 16443304 DOI: 10.1016/J.Tig.2006.01.004 |
0.564 |
|
| 2006 |
Greenberg AJ, Wu CI. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Molecular genetics of natural populations. Molecular Biology and Evolution. 23: 883-6. PMID 16361304 DOI: 10.1093/molbev/msj077 |
0.421 |
|
| 2006 |
Greenberg AJ, Moran JR, Fang S, Wu CI. Adaptive loss of an old duplicated gene during incipient speciation. Molecular Biology and Evolution. 23: 401-10. PMID 16251509 DOI: 10.1093/Molbev/Msj045 |
0.677 |
|
| 2006 |
Tang H, Wu CI. A new method for estimating nonsynonymous substitutions and its applications to detecting positive selection. Molecular Biology and Evolution. 23: 372-9. PMID 16237204 DOI: 10.1093/Molbev/Msj043 |
0.442 |
|
| 2005 |
Osada N, Hirata M, Tanuma R, Kusuda J, Hida M, Suzuki Y, Sugano S, Gojobori T, Shen CK, Wu CI, Hashimoto K. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Molecular Biology and Evolution. 22: 1976-82. PMID 15944441 DOI: 10.1093/molbev/msi187 |
0.315 |
|
| 2005 |
Lee S, Bao J, Zhou G, Shapiro J, Xu J, Shi RZ, Lu X, Clark T, Johnson D, Kim YC, Wing C, Tseng C, Sun M, Lin W, Wang J, ... ... Wu CI, et al. Detecting novel low-abundant transcripts in Drosophila. Rna (New York, N.Y.). 11: 939-46. PMID 15923377 DOI: 10.1261/Rna.7239605 |
0.557 |
|
| 2005 |
Zhou R, Shi S, Wu CI. Molecular criteria for determining new hybrid species--an application to the Sonneratia hybrids. Molecular Phylogenetics and Evolution. 35: 595-601. PMID 15878128 DOI: 10.1016/j.ympev.2005.03.012 |
0.33 |
|
| 2005 |
Alipaz JA, Karr TL, Wu CI. Evolution of sexual isolation in laboratory populations: fitness differences between mating types and the associated hybrid incompatibilities. The American Naturalist. 165: 429-38. PMID 15791535 DOI: 10.1086/428407 |
0.78 |
|
| 2005 |
Alipaz JA, Fang S, Osada N, Wu CI. Evolution of sexual isolation during secondary contact: genotypic versus phenotypic changes in laboratory populations. The American Naturalist. 165: 420-8. PMID 15791534 DOI: 10.1086/428388 |
0.791 |
|
| 2005 |
Lu J, Wu CI. Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee. Proceedings of the National Academy of Sciences of the United States of America. 102: 4063-7. PMID 15728731 DOI: 10.1073/Pnas.0500436102 |
0.488 |
|
| 2005 |
Song HD, Tu CC, Zhang GW, Wang SY, Zheng K, Lei LC, Chen QX, Gao YW, Zhou HQ, Xiang H, Zheng HJ, Chern SW, Cheng F, Pan CM, Xuan H, ... ... Wu CI, et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proceedings of the National Academy of Sciences of the United States of America. 102: 2430-5. PMID 15695582 DOI: 10.1073/pnas.0409608102 |
0.471 |
|
| 2005 |
Osada N, Wu CI. Inferring the mode of speciation from genomic data: a study of the great apes. Genetics. 169: 259-64. PMID 15677748 DOI: 10.1534/genetics.104.029231 |
0.356 |
|
| 2004 |
Ting CT, Tsaur SC, Sun S, Browne WE, Chen YC, Patel NH, Wu CI. Gene duplication and speciation in Drosophila: evidence from the Odysseus locus. Proceedings of the National Academy of Sciences of the United States of America. 101: 12232-5. PMID 15304653 DOI: 10.1073/Pnas.0401975101 |
0.652 |
|
| 2004 |
Sun S, Ting CT, Wu CI. The normal function of a speciation gene, Odysseus, and its hybrid sterility effect. Science (New York, N.Y.). 305: 81-3. PMID 15232104 DOI: 10.1126/science.1093904 |
0.678 |
|
| 2004 |
Tang H, Wyckoff GJ, Lu J, Wu CI. A universal evolutionary index for amino acid changes. Molecular Biology and Evolution. 21: 1548-56. PMID 15140949 DOI: 10.1093/Molbev/Msh158 |
0.737 |
|
| 2004 |
Sawamura K, Roote J, Wu CI, Yamamoto MT. Genetic complexity underlying hybrid male sterility in Drosophila. Genetics. 166: 789-96. PMID 15020468 DOI: 10.1534/genetics.166.2.789 |
0.439 |
|
| 2004 |
Wu CI, Ting CT. Genes and speciation. Nature Reviews. Genetics. 5: 114-22. PMID 14735122 DOI: 10.1038/nrg1269 |
0.587 |
|
| 2004 |
Kohn MH, Fang S, Wu CI. Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes. Molecular Biology and Evolution. 21: 374-83. PMID 14660692 DOI: 10.1093/Molbev/Msh026 |
0.358 |
|
| 2003 |
Greenberg AJ, Moran JR, Coyne JA, Wu CI. Ecological adaptation during incipient speciation revealed by precise gene replacement. Science (New York, N.Y.). 302: 1754-7. PMID 14657496 DOI: 10.1126/Science.1090432 |
0.681 |
|
| 2003 |
Lu J, Li WH, Wu CI. Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes". Science (New York, N.Y.). 302: 988; author reply 98. PMID 14605352 DOI: 10.1126/Science.1088277 |
0.604 |
|
| 2003 |
Fay JC, Wu CI. Sequence divergence, functional constraint, and selection in protein evolution. Annual Review of Genomics and Human Genetics. 4: 213-35. PMID 14527302 DOI: 10.1146/annurev.genom.4.020303.162528 |
0.595 |
|
| 2003 |
Wang HY, Tang H, Shen CK, Wu CI. Rapidly evolving genes in human. I. The glycophorins and their possible role in evading malaria parasites. Molecular Biology and Evolution. 20: 1795-804. PMID 12949139 DOI: 10.1093/Molbev/Msg185 |
0.498 |
|
| 2002 |
Fang S, Takahashi A, Wu CI. A mutation in the promoter of desaturase 2 is correlated with sexual isolation between Drosophila behavioral races. Genetics. 162: 781-4. PMID 12399388 |
0.461 |
|
| 2002 |
Wyckoff GJ, Li J, Wu CI. Molecular evolution of functional genes on the mammalian Y chromosome. Molecular Biology and Evolution. 19: 1633-6. PMID 12200491 DOI: 10.1093/Oxfordjournals.Molbev.A004226 |
0.71 |
|
| 2002 |
Fay JC, Wyckoff GJ, Wu CI. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature. 415: 1024-6. PMID 11875569 DOI: 10.1038/4151024a |
0.782 |
|
| 2001 |
Fay JC, Wu CI. The neutral theory in the genomic era Current Opinion in Genetics and Development. 11: 642-646. PMID 11682307 DOI: 10.1016/S0959-437X(00)00247-1 |
0.592 |
|
| 2001 |
Liu W, Wang H, Zhao S, Zhao W, Bai S, Zhao Y, Xu S, Wu C, Huang W, Chen Z, Feng G, He L. The novel gene locus for agenesis of permanent teeth (He-Zhao deficiency) maps to chromosome 10q11.2. Journal of Dental Research. 80: 1716-20. PMID 11669481 DOI: 10.1177/00220345010800080701 |
0.357 |
|
| 2001 |
Fay JC, Wyckoff GJ, Wu CI. Positive and negative selection on the human genome. Genetics. 158: 1227-34. PMID 11454770 |
0.686 |
|
| 2001 |
Ting CT, Takahashi A, Wu CI. Incipient speciation by sexual isolation in Drosophila: concurrent evolution at multiple loci. Proceedings of the National Academy of Sciences of the United States of America. 98: 6709-13. PMID 11390997 DOI: 10.1073/pnas.121418898 |
0.699 |
|
| 2001 |
Alipaz JA, Wu CI, Karr TL. Gametic incompatibilities between races of Drosophila melanogaster. Proceedings. Biological Sciences / the Royal Society. 268: 789-95. PMID 11345322 DOI: 10.1098/rspb.2000.1420 |
0.783 |
|
| 2001 |
Takahashi A, Tsaur SC, Coyne JA, Wu CI. The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 98: 3920-5. PMID 11259658 DOI: 10.1073/pnas.061465098 |
0.525 |
|
| 2001 |
Tsaur SC, Ting CT, Wu CI. Sex in Drosophila mauritiana: a very high level of amino acid polymorphism in a male reproductive protein gene, Acp26Aa. Molecular Biology and Evolution. 18: 22-6. PMID 11141189 DOI: 10.1093/Oxfordjournals.Molbev.A003716 |
0.617 |
|
| 2001 |
Wu CI. The genic view of the process of speciation Journal of Evolutionary Biology. 14: 851-865. DOI: 10.1046/j.1420-9101.2001.00335.x |
0.419 |
|
| 2000 |
Ting CT, Tsaur SC, Wu CI. The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus. Proceedings of the National Academy of Sciences of the United States of America. 97: 5313-6. PMID 10779562 DOI: 10.1073/pnas.090541597 |
0.601 |
|
| 2000 |
Sawamura K, Davis AW, Wu CI. Genetic analysis of speciation by means of introgression into Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 97: 2652-5. PMID 10706624 DOI: 10.1073/pnas.050558597 |
0.57 |
|
| 2000 |
Wyckoff GJ, Wang W, Wu CI. Rapid evolution of male reproductive genes in the descent of man. Nature. 403: 304-9. PMID 10659848 DOI: 10.1038/35002070 |
0.745 |
|
| 1999 |
Fay JC, Wu CI. A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation [1] Molecular Biology and Evolution. 16: 1003-1005. PMID 10406117 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A026175 |
0.49 |
|
| 1998 |
Ting CT, Tsaur SC, Wu ML, Wu CI. A rapidly evolving homeobox at the site of a hybrid sterility gene. Science (New York, N.Y.). 282: 1501-4. PMID 9822383 DOI: 10.1126/Science.282.5393.1501 |
0.603 |
|
| 1998 |
Tsaur SC, Ting CT, Wu CI. Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism. Molecular Biology and Evolution. 15: 1040-6. PMID 9718731 |
0.604 |
|
| 1997 |
Hollocher H, Ting CT, Pollack F, Wu CI. INCIPIENT SPECIATION BY SEXUAL ISOLATION IN DROSOPHILA MELANOGASTER: VARIATION IN MATING PREFERENCE AND CORRELATION BETWEEN SEXES. Evolution; International Journal of Organic Evolution. 51: 1175-1181. PMID 28565503 DOI: 10.1111/j.1558-5646.1997.tb03965.x |
0.758 |
|
| 1997 |
Hollocher H, Ting CT, Wu ML, Wu CI. Incipient speciation by sexual isolation in Drosophila melanogaster: extensive genetic divergence without reinforcement. Genetics. 147: 1191-201. PMID 9383062 |
0.768 |
|
| 1997 |
Tsaur SC, Wu CI. Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila Molecular Biology and Evolution. 14: 544-549. PMID 9159932 |
0.306 |
|
| 1997 |
Hollocher H, Ting CT, Pollack F, Wu CI. Incipient speciation by sexual isolation in Drosophila melanogaster: Variation in mating preference and correlation between sexes Evolution. 51: 1175-1181. |
0.731 |
|
| 1996 |
Wu CI, Johnson N, Palopoli M. Reply from C-I. Wu, N.a. Johnson and m.f. Palopoli. Trends in Ecology & Evolution. 11: 508. PMID 21237941 DOI: 10.1016/0169-5347(96)91659-6 |
0.729 |
|
| 1996 |
Wu CI, Johnson NA, Palopoli MF. Haldane's rule and its legacy: Why are there so many sterile males? Trends in Ecology & Evolution. 11: 281-4. PMID 21237844 DOI: 10.1016/0169-5347(96)10033-1 |
0.79 |
|
| 1996 |
Palopoli MF, Davis AW, Wu CI. Discord between the phylogenies inferred from molecular versus functional data: uneven rates of functional evolution or low levels of gene flow? Genetics. 144: 1321-8. PMID 8913771 |
0.783 |
|
| 1996 |
Palopoli MF, Wu CI. Rapid evolution of a coadapted gene complex: evidence from the Segregation Distorter (SD) system of meiotic drive in Drosophila melanogaster. Genetics. 143: 1675-88. PMID 8844155 |
0.76 |
|
| 1996 |
Davis AW, Wu CI. The broom of the sorcerer's apprentice: the fine structure of a chromosomal region causing reproductive isolation between two sibling species of Drosophila. Genetics. 143: 1287-98. PMID 8807300 |
0.494 |
|
| 1996 |
Hollocher H, Wu CI. The genetics of reproductive isolation in the Drosophila simulans clade: X vs. autosomal effects and male vs. female effects. Genetics. 143: 1243-55. PMID 8807297 |
0.705 |
|
| 1996 |
Wu CI, Johnson NA. Evolutionary biology. Endless forms, several powers. Nature. 382: 298-9. PMID 8684453 DOI: 10.1038/382298a0 |
0.451 |
|
| 1995 |
Wu CI, Hollocher H, Begun DJ, Aquadro CF, Xu Y, Wu ML. Sexual isolation in Drosophila melanogaster: a possible case of incipient speciation. Proceedings of the National Academy of Sciences of the United States of America. 92: 2519-23. PMID 7708677 DOI: 10.1073/pnas.92.7.2519 |
0.738 |
|
| 1995 |
Perez DE, Wu CI. Further characterization of the Odysseus locus of hybrid sterility in Drosophila: one gene is not enough. Genetics. 140: 201-6. PMID 7635285 |
0.502 |
|
| 1994 |
Palopoli MF, Doshi P, Wu CI. Characterization of two Segregation distorter revertants: evidence that the tandem duplication is necessary for Sd activity in Drosophila melanogaster. Genetics. 136: 209-15. PMID 8138158 |
0.744 |
|
| 1994 |
Davis AW, Noonburg EG, Wu CI. Evidence for complex genic interactions between conspecific chromosomes underlying hybrid female sterility in the Drosophila simulans clade. Genetics. 137: 191-9. PMID 8056310 |
0.47 |
|
| 1994 |
Cabot EL, Davis AW, Johnson NA, Wu CI. Genetics of reproductive isolation in the Drosophila simulans clade: complex epistasis underlying hybrid male sterility. Genetics. 137: 175-89. PMID 8056308 |
0.747 |
|
| 1994 |
Wu CI, Palopoli MF. Genetics of postmating reproductive isolation in animals. Annual Review of Genetics. 28: 283-308. PMID 7893128 DOI: 10.1146/annurev.ge.28.120194.001435 |
0.714 |
|
| 1994 |
Palopoli MF, Wu CI. Genetics of hybrid male sterility between drosophila sibling species: a complex web of epistasis is revealed in interspecific studies. Genetics. 138: 329-41. PMID 7828817 DOI: 10.1016/0168-9525(95)90591-X |
0.787 |
|
| 1993 |
Johnson NA, Wu CI. Evolution of postmating reproductive isolation: measuring the fitness effects of chromosomal regions containing hybrid male sterility factors. The American Naturalist. 142: 213-23. PMID 19425976 DOI: 10.1086/285535 |
0.557 |
|
| 1993 |
Wu CI, Davis AW. Evolution of postmating reproductive isolation: the composite nature of Haldane's rule and its genetic bases. The American Naturalist. 142: 187-212. PMID 19425975 DOI: 10.1086/285534 |
0.56 |
|
| 1993 |
Perez DE, Wu CI, Johnson NA, Wu ML. Genetics of reproductive isolation in the Drosophila simulans clade: DNA marker-assisted mapping and characterization of a hybrid-male sterility gene, Odysseus (Ods). Genetics. 134: 261-75. PMID 8514135 |
0.648 |
|
| 1993 |
Cabot EL, Doshi P, Wu ML, Wu CI. Population genetics of tandem repeats in centromeric heterochromatin: unequal crossing over and chromosomal divergence at the Responder locus of Drosophila melanogaster. Genetics. 135: 477-87. PMID 8244009 |
0.615 |
|
| 1993 |
Johnson NA, Hollocher H, Noonburg E, Wu CI. The effects of interspecific Y chromosome replacements on hybrid sterility within the Drosophila simulans clade. Genetics. 135: 443-53. PMID 8244006 |
0.735 |
|
| 1992 |
Johnson NA, Wu CI. An empirical test of the meiotic drive models of hybrid sterility: sex-ratio data from hybrids between Drosophila simulans and Drosophila sechellia. Genetics. 130: 507-11. PMID 1551573 |
0.517 |
|
| 1992 |
Johnson NA, Perez DE, Cabot EL, Hollocher H, Wu CI. A test of reciprocal X-Y interactions as a cause of hybrid sterility in Drosophila. Nature. 358: 751-3. PMID 1508270 DOI: 10.1038/358751a0 |
0.783 |
|
| 1989 |
Wu CI, True JR, Johnson N. Fitness reduction associated with the deletion of a satellite DNA array. Nature. 341: 248-51. PMID 2506453 DOI: 10.1038/341248a0 |
0.687 |
|
| 1988 |
Li WH, Wu CI, Luo CC. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Molecular Biology and Evolution. 2: 150-74. PMID 3916709 DOI: 10.1093/Oxfordjournals.Molbev.A040343 |
0.524 |
|
| 1988 |
Li WH, Wu CI. Rates of nucleotide substitution are evidently higher in rodents than in man. Molecular Biology and Evolution. 4: 74-82. PMID 3128714 DOI: 10.1093/Oxfordjournals.Molbev.A040423 |
0.474 |
|
| 1988 |
Wu CI, Lyttle TW, Wu ML, Lin GF. Association between a satellite DNA sequence and the Responder of Segregation Distorter in D. melanogaster. Cell. 54: 179-89. PMID 2839299 DOI: 10.1016/0092-8674(88)90550-8 |
0.716 |
|
| 1985 |
Wu CI. A STOCHASTIC SIMULATION STUDY ON SPECIATION BY SEXUAL SELECTION. Evolution; International Journal of Organic Evolution. 39: 66-82. PMID 28563651 DOI: 10.1111/j.1558-5646.1985.tb04080.x |
0.369 |
|
| 1985 |
Wu CI, Li WH. Evidence for higher rates of nucleotide substitution in rodents than in man. Proceedings of the National Academy of Sciences of the United States of America. 82: 1741-5. PMID 3856856 DOI: 10.1073/Pnas.82.6.1741 |
0.547 |
|
| 1984 |
Wu CI. The fate of autosomal modifiers of the sex-ratio trait in drosophila and other sex-linked meiotic drive systems. Theoretical Population Biology. 24: 107-20. PMID 6658686 DOI: 10.1016/0040-5809(83)90035-7 |
0.356 |
|
| 1984 |
Li W, Wu C, Luo C. Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications Journal of Molecular Evolution. 21: 58-71. PMID 6442359 DOI: 10.1007/Bf02100628 |
0.491 |
|
| 1983 |
Wu C, Beckenbach AT. EVIDENCE FOR EXTENSIVE GENETIC DIFFERENTIATION BETWEEN THE SEX-RATIO AND THE STANDARD ARRANGEMENT OF DROSOPHILA PSEUDOOBSCURA AND D. PERSIMILIS AND IDENTIFICATION OF HYBRID STERILITY FACTORS Genetics. 105: 71-86. DOI: 10.1093/genetics/105.1.71 |
0.323 |
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