Peter Beerli, Ph.D. - Publications

Affiliations: 
Scientific Computing Florida State University, Tallahassee, FL, United States 
Area:
Population genetics, Evolution, Bayesian inference, Model selection
Website:
http://people.sc.fsu.edu/~beerli

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Çilingir FG, Akin Pekşen Ç, Ambarli H, Beerli P, Bilgin CC. Exceptional maternal lineage diversity in brown bears (Ursus arctos) from Turkey Zoological Journal of the Linnean Society. 176: 463-477. DOI: 10.1111/Zoj.12322  1
2015 Zhang Y, Lu Y, Yindee M, Li KY, Kuo HY, Ju YT, Ye S, Faruque MO, Li Q, Wang Y, Cuong VC, Pham LD, Bouahom B, Yang B, Liang X, ... ... Beerli P, et al. Strong and Stable Geographic Differentiation of Swamp Buffalo Maternal and Paternal Lineages Indicates Domestication in the China/Indochina Border Region. Molecular Ecology. PMID 26677084 DOI: 10.1111/Mec.13518  1
2015 Stapper AP, Beerli P, Levitan DR. Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus. Molecular Biology and Evolution. 32: 859-70. PMID 25618458 DOI: 10.1093/Molbev/Msv010  1
2015 Beerli P. How to use MIGRATE or why are Markov chain monte Carlo programs difficult to use? Population Genetics For Animal Conservation. 42-79. DOI: 10.1017/CBO9780511626920.004  1
2014 Chi H, Beerli P. Quasi-Monte Carlo method in population genetics parameter estimation Mathematics and Computers in Simulation. DOI: 10.1016/J.Matcom.2014.02.005  1
2013 Palczewski M, Beerli P. A continuous method for gene flow. Genetics. 194: 687-96. PMID 23666937 DOI: 10.1534/Genetics.113.150904  1
2013 Hotz H, Beerli P, Uzzell T, Guex GD, Pruvost NB, Schreiber R, Plötner J. Balancing a cline by influx of migrants: a genetic transition in water frogs of eastern Greece. The Journal of Heredity. 104: 57-71. PMID 23125403 DOI: 10.1093/Jhered/Ess086  1
2013 Qiu F, Kitchen A, Beerli P, Miyamoto MM. A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data. Molecular Phylogenetics and Evolution. 66: 463-8. PMID 22579759 DOI: 10.1016/J.Ympev.2012.05.002  1
2013 Bouzid W, Štefka J, Bahri-Sfar L, Beerli P, Loot G, Lek S, Haddaoui N, Hypša V, Scholz T, Dkhil-Abbes T, Meddour R, Hassine OKB. Pathways of cryptic invasion in a fish parasite traced using coalescent analysis and epidemiological survey Biological Invasions. 15: 1907-1923. DOI: 10.1007/S10530-013-0418-Y  1
2012 Roshier DA, Heinsohn R, Adcock GJ, Beerli P, Joseph L. Biogeographic models of gene flow in two waterfowl of the Australo-Papuan tropics. Ecology and Evolution. 2: 2803-14. PMID 23170215 DOI: 10.1002/Ece3.393  1
2012 Bradic M, Beerli P, García-de León FJ, Esquivel-Bobadilla S, Borowsky RL. Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus). Bmc Evolutionary Biology. 12: 9. PMID 22269119 DOI: 10.1186/1471-2148-12-9  1
2012 Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Systematic Biology. 61: 170-3. PMID 21963610 DOI: 10.1093/Sysbio/Syr100  1
2012 Plötner J, Baier F, Akin C, Mazepa G, Schreiber R, Beerli P, Litvinchuk SN, Bilgin CC, Borkin L, Uzzell T. Genetic data reveal that water frogs of Cyprus (genus Pelophylax) are an endemic species of Messinian origin Zoosystematics and Evolution. 88: 261-283. DOI: 10.1002/Zoos.201200021  1
2010 Ak?n C, Bilgin CC, Beerli P, Westaway R, Ohst T, Litvinchuk SN, Uzzell T, Bilgin M, Hotz H, Guex GD, Plötner J. Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs have been determined by geological processes and climate change in the Late Cenozoic. Journal of Biogeography. 37: 2111-2124. PMID 22473251 DOI: 10.1111/J.1365-2699.2010.02368.X  1
2010 Boykin LM, Shatters RG, Hall DG, Dean D, Beerli P. Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using microsatellite DNA markers. Journal of Economic Entomology. 103: 2214-22. PMID 21309246 DOI: 10.1603/Ec10128  1
2010 Bedford T, Cobey S, Beerli P, Pascual M. Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). Plos Pathogens. 6: e1000918. PMID 20523898 DOI: 10.1371/Journal.Ppat.1000918  1
2010 Beerli P, Palczewski M. Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics. 185: 313-26. PMID 20176979 DOI: 10.1534/Genetics.109.112532  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x  1
2010 Plötner J, Uzzell T, Beerli P, AkIn Ç, Bilgin CC, Haefeli C, Ohst T, Köhler F, Schreiber R, Guex GD, Litvinchuk SN, Westaway R, Reyer HU, Pruvost N, Hotz H. Genetic divergence and evolution of reproductive isolation in eastern Mediterranean water frogs Evolution in Action: Case Studies in Adaptive Radiation, Speciation and the Origin of Biodiversity. 373-403. DOI: 10.1007/978-3-642-12425-9_18  1
2010 Plötner J, Uzzell T, Beerli P, AkIn Ç, Bilgin CC, Haefeli C, Ohst T, Köhler F, Schreiber R, Guex GD, Litvinchuk SN, Westaway R, Reyer HU, Pruvost N, Hotz H. Genetic divergence and evolution of reproductive isolation in eastern Mediterranean water frogs Evolution in Action: Case Studies in Adaptive Radiation, Speciation and the Origin of Biodiversity. 373-403. DOI: 10.1007/978-3-642-12425-9_18  0.64
2009 Plötner J, Köhler F, Uzzell T, Beerli P, Schreiber R, Guex GD, Hotz H. Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia). Molecular Phylogenetics and Evolution. 53: 784-91. PMID 19665056 DOI: 10.1016/J.Ympev.2009.07.037  1
2008 Gonzalez EG, Beerli P, Zardoya R. Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839). Bmc Evolutionary Biology. 8: 252. PMID 18798987 DOI: 10.1186/1471-2148-8-252  1
2008 Plötner J, Uzzell T, Beerli P, Spolsky C, Ohst T, Litvinchuk SN, Guex GD, Reyer HU, Hotz H. Widespread unidirectional transfer of mitochondrial DNA: a case in western Palaearctic water frogs. Journal of Evolutionary Biology. 21: 668-81. PMID 18373588 DOI: 10.1111/J.1420-9101.2008.01527.X  1
2008 Douhan GW, Smith ME, Huyrn KL, Westbrook A, Beerli P, Fisher AJ. Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea. Molecular Ecology. 17: 2276-86. PMID 18373531 DOI: 10.1111/J.1365-294X.2008.03753.X  1
2008 Hotz H, Guex GD, Beerli P, Semlitsch RD, Pruvost NBM. Hemiclone diversity in the hybridogenetic frog Rana esculenta outside the area of clone formation: The view from protein electrophoresis Journal of Zoological Systematics and Evolutionary Research. 46: 56-62. DOI: 10.1111/j.1439-0469.2007.00430.x  0.64
2008 Hotz H, Guex GD, Beerli P, Semlitsch RD, Pruvost NBM. Hemiclone diversity in the hybridogenetic frog Rana esculenta outside the area of clone formation: The view from protein electrophoresis Journal of Zoological Systematics and Evolutionary Research. 46: 56-62. DOI: 10.1111/J.1439-0469.2007.00430.X  1
2007 Beerli P. Estimation of the population scaled mutation rate from microsatellite data. Genetics. 177: 1967-8. PMID 17947420 DOI: 10.1534/Genetics.107.078931  1
2006 Beerli P. Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics (Oxford, England). 22: 341-5. PMID 16317072 DOI: 10.1093/Bioinformatics/Bti803  1
2005 Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ. Host switch leads to emergence of Plasmodium vivax malaria in humans. Molecular Biology and Evolution. 22: 1686-93. PMID 15858201 DOI: 10.1093/Molbev/Msi160  1
2005 Chi H, Beerli P, Evans DW, Mascagni M. On the scrambled Soboĺ sequence Lecture Notes in Computer Science. 3516: 775-782.  1
2004 Beerli P. Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations. Molecular Ecology. 13: 827-36. PMID 15012758 DOI: 10.1111/J.1365-294X.2004.02101.X  1
2003 Joy DA, Feng X, Mu J, Furuya T, Chotivanich K, Krettli AU, Ho M, Wang A, White NJ, Suh E, Beerli P, Su XZ. Early origin and recent expansion of Plasmodium falciparum. Science (New York, N.Y.). 300: 318-21. PMID 12690197 DOI: 10.1126/Science.1081449  1
2003 Brumfield RT, Beerli P, Nickerson DA, Edwards SV. The utility of single nucleotide polymorphisms in inferences of population history Trends in Ecology and Evolution. 18: 249-256. DOI: 10.1016/S0169-5347(03)00018-1  1
2002 Arbogast BS, Edwards SV, Wakeley J, Beerli P, Slowinski JB. Estimating divergence times from molecular data on phylogenetic and population genetic timescales Annual Review of Ecology and Systematics. 33: 707-740. DOI: 10.1146/Annurev.Ecolsys.33.010802.150500  1
2002 Beerli P, Edwards SV. When Did Neanderthals and Modern Humans Diverge? Evolutionary Anthropology. 11: 60-63. DOI: 10.1002/Evan.10058  1
2001 Kingsolver JG, Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hill CE, Hoang A, Gibert P, Beerli P. The strength of phenotypic selection in natural populations. The American Naturalist. 157: 245-61. PMID 18707288 DOI: 10.1086/319193  1
2001 Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hoang A, Hill CE, Beerli P, Kingsolver JG. Strength and tempo of directional selection in the wild. Proceedings of the National Academy of Sciences of the United States of America. 98: 9157-60. PMID 11470913 DOI: 10.1073/Pnas.161281098  1
2001 Beerli P, Felsenstein J. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the United States of America. 98: 4563-8. PMID 11287657 DOI: 10.1073/Pnas.081068098  1
2000 Edwards SV, Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution; International Journal of Organic Evolution. 54: 1839-54. PMID 11209764 DOI: 10.1111/J.0014-3820.2000.Tb01231.X  1
2000 Kuhner MK, Beerli P, Yamato J, Felsenstein J. Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics. 156: 439-47. PMID 10978306  1
1999 Beerli P, Felsenstein J. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics. 152: 763-73. PMID 10353916  1
1999 Hotz H, Semlitsch RD, Gutmann E, Guex GD, Beerli P. Spontaneous heterosis in larval life-history traits of hemiclonal frog hybrids. Proceedings of the National Academy of Sciences of the United States of America. 96: 2171-6. PMID 10051613 DOI: 10.1073/Pnas.96.5.2171  1
1996 Beerli P, Hotz H, Uzzell T. GEOLOGICALLY DATED SEA BARRIERS CALIBRATE A PROTEIN CLOCK FOR AEGEAN WATER FROGS. Evolution; International Journal of Organic Evolution. 50: 1676-1687. PMID 28565728 DOI: 10.1111/J.1558-5646.1996.Tb03939.X  0.64
1996 Hotz H, Uzzell T, Beerli P, Guex GD. Are hybrid clonals species? A case for enlightened anarchy Amphibia Reptilia. 17: 315-320. DOI: 10.1163/156853896X00036  1
1996 Semlitsch RD, Schmiedehausen S, Hotz H, Beerli P. Genetic compatibility between sexual and clonal genomes in local populations of the hybridogenetic Rana esculenta complex Evolutionary Ecology. 10: 531-543. DOI: 10.1007/Bf01237883  1
1996 Semlitsch RD, Schmiedehausen S, Hotz H, Beerli P. Genetic compatibility between sexual and clonal genomes in local populations of the hybridogenetic Rana esculenta complex Evolutionary Ecology. 10: 531-543.  0.64
1996 Hotz H, Uzzell T, Beerli P, Guex GD. Are hybrid clonals species? A case for enlightened anarchy Amphibia Reptilia. 17: 315-320.  0.64
1996 Beerli P, Hotz H, Uzzell T. Geologically dated sea barriers calibrate a protein clock for Aegean water frogs Evolution. 50: 1676-1687.  1
1996 Beerli P, Hotz H, Uzzell T. Geologically dated sea barriers calibrate a protein clock for Aegean water frogs Evolution. 50: 1676-1687.  0.64
1992 Hotz H, Beerli P, Spolsky C. Mitochondrial DNA reveals formation of nonhybrid frogs by natural matings between hemiclonal hybrids. Molecular Biology and Evolution. 9: 610-20. PMID 1352842 DOI: 10.1093/Oxfordjournals.Molbev.A040744  1
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