| Year |
Citation |
Score |
| 2025 |
Khodaei M, Edwards SV, Beerli P. Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling. Systematic Biology. PMID 40324034 DOI: 10.1093/sysbio/syaf015 |
0.334 |
|
| 2024 |
Khodaei M, Edwards SV, Beerli P. Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling. Biorxiv : the Preprint Server For Biology. PMID 39605625 DOI: 10.1101/2023.12.20.572577 |
0.32 |
|
| 2023 |
Anderson CB, Ospina O, Beerli P, Lemmon AR, Banker SE, Hassinger AB, Dye M, Kortyna ML, Lemmon EM. The population genetics of speciation by cascade reinforcement. Ecology and Evolution. 13: e9773. PMID 36789346 DOI: 10.1002/ece3.9773 |
0.349 |
|
| 2022 |
De Los Santos MB, Ramírez IM, Rodríguez JE, Beerli P, Valdivia HO. Genetic diversity and population structure of Leishmania (Viannia) braziliensis in the Peruvian jungle. Plos Neglected Tropical Diseases. 16: e0010374. PMID 35605021 DOI: 10.1371/journal.pntd.0010374 |
0.326 |
|
| 2022 |
Beerli P, Ashki H, Mashayekhi S, Palczewski M. Population divergence time estimation using individual lineage label switching. G3 (Bethesda, Md.). PMID 35166790 DOI: 10.1093/g3journal/jkac040 |
0.699 |
|
| 2019 |
Beerli P, Mashayekhi S, Sadeghi M, Khodaei M, Shaw K. Population Genetic Inference With MIGRATE. Current Protocols in Bioinformatics. 68: e87. PMID 31756024 DOI: 10.1002/Cpbi.87 |
0.453 |
|
| 2019 |
Mashayekhi S, Beerli P. Fractional coalescent. Proceedings of the National Academy of Sciences of the United States of America. 116: 6244-6249. PMID 30867282 DOI: 10.1073/Pnas.1810239116 |
0.375 |
|
| 2016 |
Baco AR, Etter RJ, Ribeiro PA, von der Heyden S, Beerli P, Kinlan BP. A Synthesis Of Genetic Connectivity In Deep-Sea Fauna And Implications For Marine Reserve Design. Molecular Ecology. PMID 27146215 DOI: 10.1111/Mec.13689 |
0.424 |
|
| 2016 |
Çilingir FG, Akin Pekşen Ç, Ambarli H, Beerli P, Bilgin CC. Exceptional maternal lineage diversity in brown bears (Ursus arctos) from Turkey Zoological Journal of the Linnean Society. 176: 463-477. DOI: 10.1111/Zoj.12322 |
0.438 |
|
| 2016 |
Liu P, Elshall AS, Ye M, Beerli P, Zeng X, Lu D, Tao Y. Evaluating marginal likelihood with thermodynamic integration method and comparison with several other numerical methods Water Resources Research. DOI: 10.1002/2014Wr016718 |
0.327 |
|
| 2015 |
Zhang Y, Lu Y, Yindee M, Li KY, Kuo HY, Ju YT, Ye S, Faruque MO, Li Q, Wang Y, Cuong VC, Pham LD, Bouahom B, Yang B, Liang X, ... ... Beerli P, et al. Strong and Stable Geographic Differentiation of Swamp Buffalo Maternal and Paternal Lineages Indicates Domestication in the China/Indochina Border Region. Molecular Ecology. PMID 26677084 DOI: 10.1111/Mec.13518 |
0.419 |
|
| 2015 |
Stapper AP, Beerli P, Levitan DR. Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus. Molecular Biology and Evolution. 32: 859-70. PMID 25618458 DOI: 10.1093/Molbev/Msv010 |
0.336 |
|
| 2014 |
Jackson JA, Steel DJ, Beerli P, Congdon BC, OlavarrÃa C, Leslie MS, Pomilla C, Rosenbaum H, Baker CS. Global diversity and oceanic divergence of humpback whales (Megaptera novaeangliae). Proceedings. Biological Sciences / the Royal Society. 281. PMID 24850919 DOI: 10.1098/Rspb.2013.3222 |
0.481 |
|
| 2014 |
Chi H, Beerli P. Quasi-Monte Carlo method in population genetics parameter estimation Mathematics and Computers in Simulation. DOI: 10.1016/J.Matcom.2014.02.005 |
0.478 |
|
| 2013 |
Palczewski M, Beerli P. A continuous method for gene flow. Genetics. 194: 687-96. PMID 23666937 DOI: 10.1534/Genetics.113.150904 |
0.774 |
|
| 2013 |
Hotz H, Beerli P, Uzzell T, Guex GD, Pruvost NB, Schreiber R, Plötner J. Balancing a cline by influx of migrants: a genetic transition in water frogs of eastern Greece. The Journal of Heredity. 104: 57-71. PMID 23125403 DOI: 10.1093/Jhered/Ess086 |
0.723 |
|
| 2013 |
Qiu F, Kitchen A, Beerli P, Miyamoto MM. A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data. Molecular Phylogenetics and Evolution. 66: 463-8. PMID 22579759 DOI: 10.1016/J.Ympev.2012.05.002 |
0.507 |
|
| 2013 |
Bouzid W, Štefka J, Bahri-Sfar L, Beerli P, Loot G, Lek S, Haddaoui N, Hypša V, Scholz T, Dkhil-Abbes T, Meddour R, Hassine OKB. Pathways of cryptic invasion in a fish parasite traced using coalescent analysis and epidemiological survey Biological Invasions. 15: 1907-1923. DOI: 10.1007/S10530-013-0418-Y |
0.429 |
|
| 2012 |
Roshier DA, Heinsohn R, Adcock GJ, Beerli P, Joseph L. Biogeographic models of gene flow in two waterfowl of the Australo-Papuan tropics. Ecology and Evolution. 2: 2803-14. PMID 23170215 DOI: 10.1002/Ece3.393 |
0.491 |
|
| 2012 |
Bradic M, Beerli P, García-de León FJ, Esquivel-Bobadilla S, Borowsky RL. Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus). Bmc Evolutionary Biology. 12: 9. PMID 22269119 DOI: 10.1186/1471-2148-12-9 |
0.474 |
|
| 2012 |
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Systematic Biology. 61: 170-3. PMID 21963610 DOI: 10.1093/Sysbio/Syr100 |
0.325 |
|
| 2012 |
Plötner J, Baier F, Akin C, Mazepa G, Schreiber R, Beerli P, Litvinchuk SN, Bilgin CC, Borkin L, Uzzell T. Genetic data reveal that water frogs of Cyprus (genus Pelophylax) are an endemic species of Messinian origin Zoosystematics and Evolution. 88: 261-283. DOI: 10.1002/Zoos.201200021 |
0.688 |
|
| 2010 |
Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, et al. In defence of model-based inference in phylogeography. Molecular Ecology. 19: 436-446. PMID 29284924 DOI: 10.1111/J.1365-294X.2009.04515.X |
0.446 |
|
| 2010 |
Ak?n C, Bilgin CC, Beerli P, Westaway R, Ohst T, Litvinchuk SN, Uzzell T, Bilgin M, Hotz H, Guex GD, Plötner J. Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs have been determined by geological processes and climate change in the Late Cenozoic. Journal of Biogeography. 37: 2111-2124. PMID 22473251 DOI: 10.1111/J.1365-2699.2010.02368.X |
0.747 |
|
| 2010 |
Boykin LM, Shatters RG, Hall DG, Dean D, Beerli P. Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using microsatellite DNA markers. Journal of Economic Entomology. 103: 2214-22. PMID 21309246 DOI: 10.1603/Ec10128 |
0.456 |
|
| 2010 |
Beerli P, Palczewski M. Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics. 185: 313-26. PMID 20176979 DOI: 10.1534/Genetics.109.112532 |
0.785 |
|
| 2010 |
Plötner J, Uzzell T, Beerli P, AkIn Ç, Bilgin CC, Haefeli C, Ohst T, Köhler F, Schreiber R, Guex GD, Litvinchuk SN, Westaway R, Reyer HU, Pruvost N, Hotz H. Genetic divergence and evolution of reproductive isolation in eastern Mediterranean water frogs Evolution in Action: Case Studies in Adaptive Radiation, Speciation and the Origin of Biodiversity. 373-403. DOI: 10.1007/978-3-642-12425-9_18 |
0.66 |
|
| 2010 |
Plötner J, Uzzell T, Beerli P, AkIn Ç, Bilgin CC, Haefeli C, Ohst T, Köhler F, Schreiber R, Guex GD, Litvinchuk SN, Westaway R, Reyer HU, Pruvost N, Hotz H. Genetic divergence and evolution of reproductive isolation in eastern Mediterranean water frogs Evolution in Action: Case Studies in Adaptive Radiation, Speciation and the Origin of Biodiversity. 373-403. DOI: 10.1007/978-3-642-12425-9_18 |
0.312 |
|
| 2009 |
Plötner J, Köhler F, Uzzell T, Beerli P, Schreiber R, Guex GD, Hotz H. Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia). Molecular Phylogenetics and Evolution. 53: 784-91. PMID 19665056 DOI: 10.1016/J.Ympev.2009.07.037 |
0.655 |
|
| 2008 |
Gonzalez EG, Beerli P, Zardoya R. Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839). Bmc Evolutionary Biology. 8: 252. PMID 18798987 DOI: 10.1186/1471-2148-8-252 |
0.486 |
|
| 2008 |
Plötner J, Uzzell T, Beerli P, Spolsky C, Ohst T, Litvinchuk SN, Guex GD, Reyer HU, Hotz H. Widespread unidirectional transfer of mitochondrial DNA: a case in western Palaearctic water frogs. Journal of Evolutionary Biology. 21: 668-81. PMID 18373588 DOI: 10.1111/J.1420-9101.2008.01527.X |
0.637 |
|
| 2008 |
Douhan GW, Smith ME, Huyrn KL, Westbrook A, Beerli P, Fisher AJ. Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea. Molecular Ecology. 17: 2276-86. PMID 18373531 DOI: 10.1111/J.1365-294X.2008.03753.X |
0.335 |
|
| 2008 |
Hotz H, Guex GD, Beerli P, Semlitsch RD, Pruvost NBM. Hemiclone diversity in the hybridogenetic frog Rana esculenta outside the area of clone formation: The view from protein electrophoresis Journal of Zoological Systematics and Evolutionary Research. 46: 56-62. DOI: 10.1111/J.1439-0469.2007.00430.X |
0.354 |
|
| 2008 |
Guex G, Hotz H, Uzzell T, Semlitsch RD, Beerli P, Pascolini R. Developmental disturbances in Rana esculenta tadpoles and metamorphs Zoosystematics and Evolution. 77: 79-86. DOI: 10.1002/Mmnz.20010770113 |
0.672 |
|
| 2008 |
Hotz H, Uzzell T, Guex G, Alpers D, Semlitsch RD, Beerli P. Microsatellites: A tool for evolutionary genetic studies of western Palearctic water frogs Zoosystematics and Evolution. 77: 43-50. DOI: 10.1002/Mmnz.20010770108 |
0.705 |
|
| 2007 |
Beerli P. Estimation of the population scaled mutation rate from microsatellite data. Genetics. 177: 1967-8. PMID 17947420 DOI: 10.1534/Genetics.107.078931 |
0.39 |
|
| 2006 |
Beerli P. Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics (Oxford, England). 22: 341-5. PMID 16317072 DOI: 10.1093/Bioinformatics/Bti803 |
0.497 |
|
| 2006 |
Beerli P. STATISTICAL METHODS IN (MOLECULAR) EVOLUTION1 Evolution. 60: 421. DOI: 10.1554/Br06-6.1 |
0.407 |
|
| 2005 |
Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ. Host switch leads to emergence of Plasmodium vivax malaria in humans. Molecular Biology and Evolution. 22: 1686-93. PMID 15858201 DOI: 10.1093/Molbev/Msi160 |
0.322 |
|
| 2004 |
Beerli P. Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations. Molecular Ecology. 13: 827-36. PMID 15012758 DOI: 10.1111/J.1365-294X.2004.02101.X |
0.485 |
|
| 2003 |
Joy DA, Feng X, Mu J, Furuya T, Chotivanich K, Krettli AU, Ho M, Wang A, White NJ, Suh E, Beerli P, Su XZ. Early origin and recent expansion of Plasmodium falciparum. Science (New York, N.Y.). 300: 318-21. PMID 12690197 DOI: 10.1126/Science.1081449 |
0.376 |
|
| 2003 |
Brumfield RT, Beerli P, Nickerson DA, Edwards SV. The utility of single nucleotide polymorphisms in inferences of population history Trends in Ecology and Evolution. 18: 249-256. DOI: 10.1016/S0169-5347(03)00018-1 |
0.532 |
|
| 2002 |
Arbogast BS, Edwards SV, Wakeley J, Beerli P, Slowinski JB. Estimating divergence times from molecular data on phylogenetic and population genetic timescales Annual Review of Ecology and Systematics. 33: 707-740. DOI: 10.1146/Annurev.Ecolsys.33.010802.150500 |
0.525 |
|
| 2002 |
Arbogast BS, Edwards SV, Wakeley J, Beerli P, Slowinski JB. Estimating divergence times from molecular data on phylogenetic and population genetic timescales Annual Review of Ecology and Systematics. 33: 707-740. DOI: 10.1146/annurev.ecolsys.33.010802.150500 |
0.435 |
|
| 2001 |
Kingsolver JG, Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hill CE, Hoang A, Gibert P, Beerli P. The strength of phenotypic selection in natural populations. The American Naturalist. 157: 245-61. PMID 18707288 DOI: 10.1086/319193 |
0.354 |
|
| 2001 |
Beerli P, Felsenstein J. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the United States of America. 98: 4563-8. PMID 11287657 DOI: 10.1073/Pnas.081068098 |
0.682 |
|
| 2000 |
Edwards SV, Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution; International Journal of Organic Evolution. 54: 1839-54. PMID 11209764 DOI: 10.1111/J.0014-3820.2000.Tb01231.X |
0.536 |
|
| 2000 |
Kuhner MK, Beerli P, Yamato J, Felsenstein J. Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics. 156: 439-47. PMID 10978306 |
0.726 |
|
| 1999 |
Beerli P, Felsenstein J. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics. 152: 763-73. PMID 10353916 |
0.655 |
|
| 1999 |
Hotz H, Semlitsch RD, Gutmann E, Guex GD, Beerli P. Spontaneous heterosis in larval life-history traits of hemiclonal frog hybrids. Proceedings of the National Academy of Sciences of the United States of America. 96: 2171-6. PMID 10051613 DOI: 10.1073/Pnas.96.5.2171 |
0.334 |
|
| 1997 |
Beerli P. Statistical analyses of population genetic data. Trends in Ecology & Evolution. 12: 488. PMID 21238166 DOI: 10.1016/S0169-5347(97)84405-9 |
0.466 |
|
| 1996 |
Beerli P, Hotz H, Uzzell T. GEOLOGICALLY DATED SEA BARRIERS CALIBRATE A PROTEIN CLOCK FOR AEGEAN WATER FROGS. Evolution; International Journal of Organic Evolution. 50: 1676-1687. PMID 28565728 DOI: 10.1111/J.1558-5646.1996.Tb03939.X |
0.736 |
|
| 1996 |
Hotz H, Uzzell T, Beerli P, Guex GD. Are hybrid clonals species? A case for enlightened anarchy Amphibia Reptilia. 17: 315-320. DOI: 10.1163/156853896X00036 |
0.622 |
|
| 1996 |
Semlitsch RD, Schmiedehausen S, Hotz H, Beerli P. Genetic compatibility between sexual and clonal genomes in local populations of the hybridogenetic Rana esculenta complex Evolutionary Ecology. 10: 531-543. DOI: 10.1007/Bf01237883 |
0.359 |
|
| 1996 |
Beerli P, Hotz H, Uzzell T. Geologically dated sea barriers calibrate a protein clock for Aegean water frogs Evolution. 50: 1676-1687. |
0.592 |
|
| 1992 |
Hotz H, Beerli P, Spolsky C. Mitochondrial DNA reveals formation of nonhybrid frogs by natural matings between hemiclonal hybrids. Molecular Biology and Evolution. 9: 610-20. PMID 1352842 DOI: 10.1093/Oxfordjournals.Molbev.A040744 |
0.333 |
|
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