Martin Wu - Publications

Affiliations: 
2005-2007 University of California, Davis, Davis, CA 
 2007- University of Virginia, Charlottesville, VA 

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ren T, Kahrl AF, Wu M, Cox RM. Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota of Anolis lizards. Molecular Ecology. PMID 27497270 DOI: 10.1111/Mec.13796  0.56
2015 Ren T, Grieneisen LE, Alberts SC, Archie EA, Wu M. Development, diet and dynamism: longitudinal and cross-sectional predictors of gut microbial communities in wild baboons. Environmental Microbiology. PMID 25818066 DOI: 10.1111/1462-2920.12852  0.56
2015 Weller C, Wu M. A generation-time effect on the rate of molecular evolution in bacteria Evolution. 69: 643-652. PMID 25564727 DOI: 10.1111/evo.12597  0.56
2014 Sloan DB, Triant DA, Forrester NJ, Bergner LM, Wu M, Taylor DR. A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae). Molecular Phylogenetics and Evolution. 72: 82-9. PMID 24373909 DOI: 10.1016/J.Ympev.2013.12.004  0.56
2014 Sloan DB, Triant DA, Wu M, Taylor DR. Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes. Molecular Biology and Evolution. 31: 673-82. PMID 24336923 DOI: 10.1093/Molbev/Mst259  0.56
2013 Ren T, Glatt DU, Nguyen TN, Allen EK, Early SV, Sale M, Winther B, Wu M. 16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids Environmental Microbiology. 15: 535-547. PMID 23113966 DOI: 10.1111/1462-2920.12000  0.56
2012 Kembel SW, Wu M, Eisen JA, Green JL. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. Plos Computational Biology. 8: e1002743. PMID 23133348 DOI: 10.1371/Journal.Pcbi.1002743  0.56
2012 Kolling GL, Wu M, Warren CA, Durmaz E, Klaenhammer TR, Timko MP, Guerrant RL. Lactic acid production by Streptococcus thermophilus alters Clostridium difficile infection and in vitro Toxin A production. Gut Microbes. 3: 523-9. PMID 22895082 DOI: 10.4161/gmic.21757  0.56
2012 Wu M, Chatterji S, Eisen JA. Accounting for alignment uncertainty in phylogenomics. Plos One. 7: e30288. PMID 22272325 DOI: 10.1371/Journal.Pone.0030288  0.56
2012 Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, Palmer JD, Taylor DR. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. Plos Biology. 10: e1001241. PMID 22272183 DOI: 10.1371/Journal.Pbio.1001241  0.56
2012 Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biology and Evolution. 4: 294-306. PMID 22247429 DOI: 10.1093/Gbe/Evs006  0.56
2011 Coyne RS, Hannick L, Shanmugam D, Hostetler JB, Brami D, Joardar VS, Johnson J, Radune D, Singh I, Badger JH, Kumar U, Saier M, Wang Y, Cai H, Gu J, ... ... Wu M, et al. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. Genome Biology. 12: R100. PMID 22004680 DOI: 10.1186/Gb-2011-12-10-R100  0.56
2011 Wu D, Wu M, Halpern A, Rusch DB, Yooseph S, Frazier M, Venter JC, Eisen JA. Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees. Plos One. 6: e18011. PMID 21437252 DOI: 10.1371/Journal.Pone.0018011  0.56
2009 Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656  0.56
2009 Rastogi R, Wu M, Dasgupta I, Fox GE. Visualization of ribosomal RNA operon copy number distribution. Bmc Microbiology. 9: 208. PMID 19781086 DOI: 10.1186/1471-2180-9-208  0.56
2009 Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207. PMID 19148287 DOI: 10.1371/Journal.Pone.0004207  0.56
2008 Wu M, Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biology. 9: R151. PMID 18851752 DOI: 10.1186/Gb-2008-9-10-R151  0.56
2007 Maresca JA, Graham JE, Wu M, Eisen JA, Bryant DA. Identification of a fourth family of lycopene cyclases in photosynthetic bacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 11784-9. PMID 17606904 DOI: 10.1073/Pnas.0702984104  0.56
2006 Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286  0.56
2005 Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, et al. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. Plos Genetics. 1: e65. PMID 16311624 DOI: 10.1371/Journal.Pgen.0010065  0.56
2004 Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, et al. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). Plos Biology. 2: e303. PMID 15383840 DOI: 10.1371/Journal.Pbio.0020303  0.56
2004 Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C, Ahmadinejad N, Wiegand C, Madupu R, Beanan MJ, Brinkac LM, Daugherty SC, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. Plos Biology. 2: E69. PMID 15024419 DOI: 10.1371/Journal.Pbio.0020069  0.56
2003 Ermolaeva MD, Wu M, Eisen JA, Salzberg SL. The age of the Arabidopsis thaliana genome duplication. Plant Molecular Biology. 51: 859-66. PMID 12777046 DOI: 10.1023/A:1023001130337  0.56
2003 Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR, Holtzapple EK, Okstad OA, Helgason E, Rilstone J, Wu M, et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423: 81-6. PMID 12721629 DOI: 10.1038/Nature01586  0.56
2002 Eisen JA, Wu M. Phylogenetic analysis and gene functional predictions: phylogenomics in action. Theoretical Population Biology. 61: 481-7. PMID 12167367 DOI: 10.1006/Tpbi.2002.1594  0.56
2002 Eisen JA, Nelson KE, Paulsen IT, Heidelberg JF, Wu M, Dodson RJ, Deboy R, Gwinn ML, Nelson WC, Haft DH, Hickey EK, Peterson JD, Durkin AS, Kolonay JL, Yang F, et al. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proceedings of the National Academy of Sciences of the United States of America. 99: 9509-14. PMID 12093901 DOI: 10.1073/Pnas.132181499  0.56
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