Jeffrey D. Palmer - Publications


116 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Garcia LE, Edera AA, Palmer JD, Sato H, Sanchez-Puerta MV. Horizontal gene transfers dominate the functional mitochondrial gene space of a holoparasitic plant. The New Phytologist. PMID 32929737 DOI: 10.1111/nph.16926  1
2018 Su HJ, Barkman TJ, Hao W, Jones SS, Naumann J, Skippington E, Wafula EK, Hu JM, Palmer JD, dePamphilis CW. Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant . Proceedings of the National Academy of Sciences of the United States of America. PMID 30598433 DOI: 10.1073/pnas.1816822116  1
2018 Cole LW, Guo W, Mower JP, Palmer JD. High and variable rates of repeat-mediated mitochondrial genome rearrangement in a genus of plants. Molecular Biology and Evolution. PMID 30202905 DOI: 10.1093/molbev/msy176  1
2017 Wu Z, Sloan DB, Brown CW, Rosenblueth M, Palmer JD, Ong HC. Mitochondrial retroprocessing promoted functional transfers of rpl5 to the nucleus in grasses. Molecular Biology and Evolution. PMID 28541477 DOI: 10.1093/molbev/msx170  1
2017 Skippington E, Barkman TJ, Rice DW, Palmer JD. Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size. Bmc Plant Biology. 17: 49. PMID 28222679 DOI: 10.1186/s12870-017-0992-8  0.48
2016 Guo W, Grewe F, Fan W, Young GJ, Knoop V, Palmer JD, Mower JP. Ginkgo and Welwitschia mitogenomes reveal extreme contrasts in gymnosperm mitochondrial evolution. Molecular Biology and Evolution. PMID 26831941 DOI: 10.1093/molbev/msw024  1
2015 Taylor ZN, Rice DW, Palmer JD. The Complete Moss Mitochondrial Genome in the Angiosperm Amborella Is a Chimera Derived from Two Moss Whole-Genome Transfers. Plos One. 10: e0137532. PMID 26618775 DOI: 10.1371/journal.pone.0137532  1
2015 Skippington E, Barkman TJ, Rice DW, Palmer JD. Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100885 DOI: 10.1073/pnas.1504491112  0.48
2015 Sanchez-Puerta MV, Zubko MK, Palmer JD. Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant. The New Phytologist. 206: 381-96. PMID 25441621 DOI: 10.1111/nph.13188  1
2014 Magee AM, Aspinall S, Rice DW, Cusack BP, Sémon M, Perry AS, Stefanović S, Milbourne D, Barth S, Palmer JD, Gray JC, Kavanagh TA, Wolfe KH. Localized hypermutation and associated gene losses in legume chloroplast genomes (Genome Research (2010) 20, (1700-1710)) Genome Research. 24: 1052.  1
2013 Rice DW, Alverson AJ, Richardson AO, Young GJ, Sanchez-Puerta MV, Munzinger J, Barry K, Boore JL, Zhang Y, dePamphilis CW, Knox EB, Palmer JD. Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science (New York, N.Y.). 342: 1468-73. PMID 24357311 DOI: 10.1126/science.1246275  1
2013 Gutu A, Nesbit AD, Alverson AJ, Palmer JD, Kehoe DM. Unique role for translation initiation factor 3 in the light color regulation of photosynthetic gene expression. Proceedings of the National Academy of Sciences of the United States of America. 110: 16253-8. PMID 24048028 DOI: 10.1073/pnas.1306332110  1
2013 Richardson AO, Rice DW, Young GJ, Alverson AJ, Palmer JD. The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. Bmc Biology. 11: 29. PMID 23587068 DOI: 10.1186/1741-7007-11-29  1
2013 DePamphilis CW, Palmer JD, Rounsley S, Sankoff D, Schuster SC, Ammiraju JSS, Barbazuk WB, Chamala S, Chanderbali AS, Determann R, Hong M, Ralph P, Talag J, Tomsho L, Walts B, et al. The Amborella genome and the evolution of flowering plants Science. 342. DOI: 10.1126/science.1241089  1
2013 Zheng YH, Alverson AJ, Wang QF, Palmer JD. Chloroplast phylogeny of Cucurbita: Evolution of the domesticated and wild species Journal of Systematics and Evolution. 51: 326-334. DOI: 10.1111/jse.12006  1
2012 Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, Palmer JD, Taylor DR. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. Plos Biology. 10: e1001241. PMID 22272183 DOI: 10.1371/journal.pbio.1001241  1
2012 Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biology and Evolution. 4: 294-306. PMID 22247429 DOI: 10.1093/gbe/evs006  1
2011 Hao W, Palmer JD. HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion. Mobile Genetic Elements. 1: 256-261. PMID 22545235 DOI: 10.4161/mge.19030  1
2011 Sanchez-Puerta MV, Abbona CC, Zhuo S, Tepe EJ, Bohs L, Olmstead RG, Palmer JD. Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons. Bmc Evolutionary Biology. 11: 277. PMID 21943226 DOI: 10.1186/1471-2148-11-277  1
2011 Alverson AJ, Rice DW, Dickinson S, Barry K, Palmer JD. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber. The Plant Cell. 23: 2499-513. PMID 21742987 DOI: 10.1105/tpc.111.087189  1
2011 Alverson AJ, Zhuo S, Rice DW, Sloan DB, Palmer JD. The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats. Plos One. 6: e16404. PMID 21283772 DOI: 10.1371/journal.pone.0016404  1
2010 Mower JP, Stefanović S, Hao W, Gummow JS, Jain K, Ahmed D, Palmer JD. Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. Bmc Biology. 8: 150. PMID 21176201 DOI: 10.1186/1741-7007-8-150  1
2010 Hao W, Richardson AO, Zheng Y, Palmer JD. Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proceedings of the National Academy of Sciences of the United States of America. 107: 21576-81. PMID 21115831 DOI: 10.1073/pnas.1016295107  1
2010 Magee AM, Aspinall S, Rice DW, Cusack BP, Sémon M, Perry AS, Stefanović S, Milbourne D, Barth S, Palmer JD, Gray JC, Kavanagh TA, Wolfe KH. Localized hypermutation and associated gene losses in legume chloroplast genomes. Genome Research. 20: 1700-10. PMID 20978141 DOI: 10.1101/gr.111955.110  1
2010 Sloan DB, Alverson AJ, Storchová H, Palmer JD, Taylor DR. Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia. Bmc Evolutionary Biology. 10: 274. PMID 20831793 DOI: 10.1186/1471-2148-10-274  1
2010 Sloan DB, MacQueen AH, Alverson AJ, Palmer JD, Taylor DR. Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics. 185: 1369-80. PMID 20479143 DOI: 10.1534/genetics.110.118000  1
2010 Alverson AJ, Wei X, Rice DW, Stern DB, Barry K, Palmer JD. Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae). Molecular Biology and Evolution. 27: 1436-48. PMID 20118192 DOI: 10.1093/molbev/msq029  1
2009 Hao W, Palmer JD. Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes. Proceedings of the National Academy of Sciences of the United States of America. 106: 16728-33. PMID 19805364 DOI: 10.1073/pnas.0908766106  1
2009 Stefanović S, Pfeil BE, Palmer JD, Doyle JJ. Relationships among phaseoloid legumes based on sequences from eight chloroplast regions Systematic Botany. 34: 115-128.  1
2008 Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nature Reviews. Genetics. 9: 605-18. PMID 18591983 DOI: 10.1038/nrg2386  1
2008 Sanchez-Puerta MV, Cho Y, Mower JP, Alverson AJ, Palmer JD. Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria. Molecular Biology and Evolution. 25: 1762-77. PMID 18524785 DOI: 10.1093/molbev/msn129  1
2008 Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Palmer JD, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/nature06856  1
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/gb-2008-9-3-402  1
2007 Haugen P, Bhattacharya D, Palmer JD, Turner S, Lewis LA, Pryer KM. Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns. Bmc Evolutionary Biology. 7: 159. PMID 17825109 DOI: 10.1186/1471-2148-7-159  1
2007 Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. Bmc Evolutionary Biology. 7: 135. PMID 17688696 DOI: 10.1186/1471-2148-7-135  1
2007 Richardson AO, Palmer JD. Horizontal gene transfer in plants. Journal of Experimental Botany. 58: 1-9. PMID 17030541 DOI: 10.1093/jxb/erl148  1
2006 Rice DW, Palmer JD. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. Bmc Biology. 4: 31. PMID 16956407 DOI: 10.1186/1741-7007-4-31  1
2006 Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK. The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Molecular Biology and Evolution. 23: 2175-90. PMID 16916942 DOI: 10.1093/molbev/msl089  1
2006 Mower JP, Palmer JD. Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris. Molecular Genetics and Genomics : Mgg. 276: 285-93. PMID 16862402 DOI: 10.1007/s00438-006-0139-3  1
2006 Ong HC, Palmer JD. Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus. Bmc Evolutionary Biology. 6: 55. PMID 16842621 DOI: 10.1186/1471-2148-6-55  1
2005 Parkinson CL, Mower JP, Qiu YL, Shirk AJ, Song K, Young ND, DePamphilis CW, Palmer JD. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. Bmc Evolutionary Biology. 5: 73. PMID 16368004 DOI: 10.1186/1471-2148-5-73  1
2005 Fischer WM, Palmer JD. Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia. Molecular Phylogenetics and Evolution. 36: 606-22. PMID 15923129 DOI: 10.1016/j.ympev.2005.03.031  1
2004 Palmer JD, Soltis DE, Chase MW. The plant tree of life: an overview and some points of view. American Journal of Botany. 91: 1437-45. PMID 21652302 DOI: 10.3732/ajb.91.10.1437  1
2004 Keeling PJ, Archibald JM, Fast NM, Palmer JD. Comment on "The evolution of modern eukaryotic phytoplankton". Science (New York, N.Y.). 306: 2191; author reply 2. PMID 15618503 DOI: 10.1126/science.1103879  1
2004 Cho Y, Mower JP, Qiu YL, Palmer JD. Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. Proceedings of the National Academy of Sciences of the United States of America. 101: 17741-6. PMID 15598738 DOI: 10.1073/pnas.0408302101  1
2004 Bergthorsson U, Richardson AO, Young GJ, Goertzen LR, Palmer JD. Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella. Proceedings of the National Academy of Sciences of the United States of America. 101: 17747-52. PMID 15598737 DOI: 10.1073/pnas.0408336102  1
2004 Mower JP, Stefanović S, Young GJ, Palmer JD. Plant genetics: gene transfer from parasitic to host plants. Nature. 432: 165-6. PMID 15538356 DOI: 10.1038/432165b  1
2004 Soltis DE, Albert VA, Savolainen V, Hilu K, Qiu YL, Chase MW, Farris JS, Stefanović S, Rice DW, Palmer JD, Soltis PS. Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics. Trends in Plant Science. 9: 477-83. PMID 15465682 DOI: 10.1016/j.tplants.2004.08.008  1
2004 Stefanović S, Rice DW, Palmer JD. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? Bmc Evolutionary Biology. 4: 35. PMID 15453916 DOI: 10.1186/1471-2148-4-35  1
2004 Qiu YL, Palmer JD. Many independent origins of trans splicing of a plant mitochondrial group II intron. Journal of Molecular Evolution. 59: 80-9. PMID 15383910 DOI: 10.1007/s00239-004-2606-y  1
2004 Gerbod D, Sanders E, Moriya S, Noël C, Takasu H, Fast NM, Delgado-Viscogliosi P, Ohkuma M, Kudo T, Capron M, Palmer JD, Keeling PJ, Viscogliosi E. Molecular phylogenies of Parabasalia inferred from four protein genes and comparison with rRNA trees. Molecular Phylogenetics and Evolution. 31: 572-80. PMID 15062795 DOI: 10.1016/j.ympev.2003.09.013  1
2003 Adams KL, Palmer JD. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Molecular Phylogenetics and Evolution. 29: 380-95. PMID 14615181 DOI: 10.1016/S1055-7903(03)00194-5  1
2003 Bergthorsson U, Adams KL, Thomason B, Palmer JD. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature. 424: 197-201. PMID 12853958 DOI: 10.1038/nature01743  1
2003 Cummings MP, Nugent JM, Olmstead RG, Palmer JD. Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms. Current Genetics. 43: 131-8. PMID 12695853 DOI: 10.1007/s00294-003-0378-3  1
2003 Palmer JD. The symbiotic birth and spread of plastids: How many times and whodunit? Journal of Phycology. 39: 4-11. DOI: 10.1046/j.1529-8817.2003.02185.x  1
2002 Adams KL, Qiu YL, Stoutemyer M, Palmer JD. Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution. Proceedings of the National Academy of Sciences of the United States of America. 99: 9905-12. PMID 12119382 DOI: 10.1073/pnas.042694899  1
2002 Adams KL, Daley DO, Whelan J, Palmer JD. Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. The Plant Cell. 14: 931-43. PMID 11971146 DOI: 10.1105/tpc.010483  1
2002 Daley DO, Adams KL, Clifton R, Qualmann S, Millar AH, Palmer JD, Pratje E, Whelan J. Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2. The Plant Journal : For Cell and Molecular Biology. 30: 11-21. PMID 11967089 DOI: 10.1046/j.1365-313X.2002.01263.x  1
2001 Adams KL, Ong HC, Palmer JD. Mitochondrial gene transfer in pieces: fission of the ribosomal protein gene rpl2 and partial or complete gene transfer to the nucleus. Molecular Biology and Evolution. 18: 2289-97. PMID 11719578  1
2001 Gugerli F, Sperisen C, Büchler U, Brunner I, Brodbeck S, Palmer JD, Qiu YL. The evolutionary split of Pinaceae from other conifers: Evidence from an intron loss and a multigene phylogeny Molecular Phylogenetics and Evolution. 21: 167-175. PMID 11697913 DOI: 10.1006/mpev.2001.1004  1
2001 Keeling PJ, Palmer JD. Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proceedings of the National Academy of Sciences of the United States of America. 98: 10745-50. PMID 11526220 DOI: 10.1073/pnas.191337098  1
2001 Adams KL, Rosenblueth M, Qiu YL, Palmer JD. Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution. Genetics. 158: 1289-300. PMID 11454775  1
2001 Millen RS, Olmstead RG, Adams KL, Palmer JD, Lao NT, Heggie L, Kavanagh TA, Hibberd JM, Gray JC, Morden CW, Calie PJ, Jermiin LS, Wolfe KH. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. The Plant Cell. 13: 645-58. PMID 11251102 DOI: 10.1105/tpc.13.3.645  1
2000 Nickrent DL, Parkinson CL, Palmer JD, Duff RJ. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Molecular Biology and Evolution. 17: 1885-95. PMID 11110905  1
2000 Adams KL, Daley DO, Qiu YL, Whelan J, Palmer JD. Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants. Nature. 408: 354-7. PMID 11099041 DOI: 10.1038/35042567  1
2000 Keeling PJ, Palmer JD. Parabasalian flagellates are ancient eukaryotes. Nature. 405: 635-7. PMID 10864312 DOI: 10.1038/35015167  1
2000 Palmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, Song K. Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. Proceedings of the National Academy of Sciences of the United States of America. 97: 6960-6. PMID 10860957 DOI: 10.1073/pnas.97.13.6960  1
2000 Palmer JD. Molecular evolution: A single birth of all plastids? Nature. 405: 32-33. PMID 10811205 DOI: 10.1038/35011184  1
2000 Chaw SM, Parkinson CL, Cheng Y, Vincent TM, Palmer JD. Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proceedings of the National Academy of Sciences of the United States of America. 97: 4086-91. PMID 10760277 DOI: 10.1073/pnas.97.8.4086  1
2000 Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D. The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron Current Genetics. 37: 12-23. PMID 10672439 DOI: 10.1007/s002940050002  1
2000 Keeling PJ, Luker MA, Palmer JD. Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Molecular Biology and Evolution. 17: 23-31. PMID 10666703  1
2000 Schisler NJ, Palmer JD. The IDB and IEDB: Intron sequence and evolution databases Nucleic Acids Research. 28: 181-184. PMID 10592220  1
1999 Parkinson CL, Adams KL, Palmer JD. Multigene analyses identify the three earliest lineages of extant flowering plants. Current Biology : Cb. 9: 1485-8. PMID 10607592 DOI: 10.1016/S0960-9822(00)80119-0  1
1999 Adams KL, Song K, Roessler PG, Nugent JM, Doyle JL, Doyle JJ, Palmer JD. Intracellular gene transfer in action: dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes. Proceedings of the National Academy of Sciences of the United States of America. 96: 13863-8. PMID 10570164 DOI: 10.1073/pnas.96.24.13863  1
1999 Cho Y, Palmer JD. Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family Molecular Biology and Evolution. 16: 1155-1165. PMID 10486971  1
1999 Turner S, Pryer KM, Miao VPW, Palmer JD. Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis Journal of Eukaryotic Microbiology. 46: 327-338. PMID 10461381  1
1999 Keeling PJ, Palmer JD, Donald RG, Roos DS, Waller RF, McFadden GI. Shikimate pathway in apicomplexan parasites. Nature. 397: 219-20. PMID 9930696 DOI: 10.1038/16615  1
1999 Qiu YL, Palmer JD. Phylogeny of early land plants: Insights from genes and genomes Trends in Plant Science. 4: 26-30. DOI: 10.1016/S1360-1385(98)01361-2  1
1999 Knox EB, Palmer JD. The chloroplast genome arrangement of Lobelia thuliniana (Lobeliaceae): Expansion of the inverted repeat in an ancestor of the Campanulales Plant Systematics and Evolution. 214: 49-64.  1
1998 Cho Y, Qiu YL, Kuhlman P, Palmer JD. Explosive invasion of plant mitochondria by a group I intron Proceedings of the National Academy of Sciences of the United States of America. 95: 14244-14249. PMID 9826685 DOI: 10.1073/pnas.95.24.14244  1
1998 Qiu YL, Cho Y, Cox JC, Palmer JD. The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature. 394: 671-4. PMID 9716129 DOI: 10.1038/29286  1
1998 Knox EB, Palmer JD. Chloroplast DNA evidence on the origin and radiation of the giant lobelias in eastern Africa Systematic Botany. 23: 109-149.  1
1997 Stoltzfus A, Logsdon JM, Palmer JD, Doolittle WF. Intron "sliding" and the diversity of intron positions. Proceedings of the National Academy of Sciences of the United States of America. 94: 10739-44. PMID 9380704 DOI: 10.1073/pnas.94.20.10739  1
1997 Palmer JD. Genome evolution: The mitochondrion that time forgot Nature. 387: 454-455. PMID 9168103  1
1997 Cosner ME, Jansen RK, Palmer JD, Downie SR. The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): Multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families Current Genetics. 31: 419-429. PMID 9162114 DOI: 10.1007/s002940050225  1
1997 Köhler S, Delwiche CF, Denny PW, Tilney LG, Webster P, Wilson RJ, Palmer JD, Roos DS. A plastid of probable green algal origin in Apicomplexan parasites. Science (New York, N.Y.). 275: 1485-9. PMID 9045615 DOI: 10.1126/science.275.5305.1485  1
1997 Palmer JD. Organelle genomes: Going, going, gone! Science. 275: 790-791. PMID 9036544 DOI: 10.1126/science.275.5301.790  1
1997 Stassen NY, Logsdon JM, Vora GJ, Offenberg HH, Palmer JD, Zolan ME. Isolation and characterization of rad51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs. Current Genetics. 31: 144-57. PMID 9021132 DOI: 10.1007/s002940050189  1
1997 Rieseberg LH, Gastony GJ, Palmer JD, Adams J, Cipollini D. Mergers of botany and biology departments [2] Science. 276: 181-182. DOI: 10.1126/science.276.5310.181  1
1997 Olmstead RG, Palmer JD. Implications for the phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation Systematic Botany. 22: 19-29.  1
1996 Barns SM, Delwiche CF, Palmer JD, Dawson SC, Hershberger KL, Pace NR. Phylogenetic perspective on microbial life in hydrothermal ecosystems, past and present. Ciba Foundation Symposium. 202: 24-32; discussion 32. PMID 9243008  1
1996 Barns SM, Delwiche CF, Palmer JD, Pace NR. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 93: 9188-93. PMID 8799176 DOI: 10.1073/pnas.93.17.9188  1
1996 Baldauf SL, Palmer JD, Doolittle WF. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny Proceedings of the National Academy of Sciences of the United States of America. 93: 7749-7754. PMID 8755547 DOI: 10.1073/pnas.93.15.7749  1
1996 Palmer JD, Delwiche CF. Second-hand chloroplasts and the case of the disappearing nucleus. Proceedings of the National Academy of Sciences of the United States of America. 93: 7432-5. PMID 8755491  1
1996 Delwiche CF, Palmer JD. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Molecular Biology and Evolution. 13: 873-82. PMID 8754222  1
1996 Doyle JJ, Doyle JL, Ballenger JA, Palmer JD. The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae. Molecular Phylogenetics and Evolution. 5: 429-38. PMID 8728401 DOI: 10.1006/mpev.1996.0038  1
1996 Palmer JD. Rubisco surprises in dinoflagellates The Plant Cell. 8: 343-345. PMID 8721744  1
1995 Palmer JD. Rubisco rules fall; Gene transfer triumphs Bioessays. 17: 1005-1008. PMID 8634059  1
1995 Kuhlman P, Palmer JD. Isolation, expression, and evolution of the gene encoding mitochondrial elongation factor Tu in Arabidopsis thaliana Plant Molecular Biology. 29: 1057-1070. PMID 8555448 DOI: 10.1007/BF00014977  1
1995 Ems SC, Morden CW, Dixon CK, Wolfe KH, dePamphilis CW, Palmer JD. Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana. Plant Molecular Biology. 29: 721-33. PMID 8541499 DOI: 10.1007/BF00041163  1
1995 Logsdon JM, Tyshenko MG, Dixon C, D-Jafari J, Walker VK, Palmer JD. Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory. Proceedings of the National Academy of Sciences of the United States of America. 92: 8507-11. PMID 7667320 DOI: 10.1073/pnas.92.18.8507  1
1995 Delwiche CF, Kuhsel M, Palmer JD. Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Molecular Phylogenetics and Evolution. 4: 110-28. PMID 7663757 DOI: 10.1006/mpev.1995.1012  1
1995 Knox EB, Palmer JD. Chloroplast DNA variation and the recent radiation of the giant senecios (Asteraceae) on the tall mountains of eastern Africa Proceedings of the National Academy of Sciences of the United States of America. 92: 10349-10353. PMID 7479782 DOI: 10.1073/pnas.92.22.10349  1
1995 Knox EB, Palmer JD. The origin of Dendrosenecio within the Senecioneae (Asteraceae) based on chloroplast DNA evidence American Journal of Botany. 82: 1567-1573.  1
1993 Baldauf SL, Palmer JD. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proceedings of the National Academy of Sciences of the United States of America. 90: 11558-62. PMID 8265589 DOI: 10.1073/pnas.90.24.11558  1
1992 Morden CW, Delwiche CF, Kuhsel M, Palmer JD. Gene phylogenies and the endosymbiotic origin of plastids. Bio Systems. 28: 75-90. PMID 1292669 DOI: 10.1016/0303-2647(92)90010-V  1
1991 Downie SR, Olmstead RG, Zurawski G, Soltis DE, Soltis PS, Watson JC, Palmer JD. SIX INDEPENDENT LOSSES OF THE CHLOROPLAST DNA rpl2 INTRON IN DICOTYLEDONS: MOLECULAR AND PHYLOGENETIC IMPLICATIONS. Evolution; International Journal of Organic Evolution. 45: 1245-1259. PMID 28564183 DOI: 10.1111/j.1558-5646.1991.tb04390.x  1
1991 Gantt JS, Baldauf SL, Calie PJ, Weeden NF, Palmer JD. Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron. The Embo Journal. 10: 3073-8. PMID 1915281 DOI: 10.1002/j.1460-2075.1991.tb07859.x  1
1990 Jansen RK, Holsinger KE, Michaels HJ, Palmer JD. PHYLOGENETIC ANALYSIS OF CHLOROPLAST DNA RESTRICTION SITE DATA AT HIGHER TAXONOMIC LEVELS: AN EXAMPLE FROM THE ASTERACEAE. Evolution; International Journal of Organic Evolution. 44: 2089-2105. PMID 28564424 DOI: 10.1111/j.1558-5646.1990.tb04314.x  1
1990 Baldauf SL, Manhart JR, Palmer JD. Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae. Proceedings of the National Academy of Sciences of the United States of America. 87: 5317-21. PMID 2371274 DOI: 10.1073/pnas.87.14.5317  1
1990 Baldauf SL, Palmer JD. Evolutionary transfer of the chloroplast tufA gene to the nucleus. Nature. 344: 262-5. PMID 2314461 DOI: 10.1038/344262a0  1
1989 Bruns TD, Fogel R, White TJ, Palmer JD. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature. 339: 140-2. PMID 2716834 DOI: 10.1038/339140a0  1
1989 Bruns TD, Palmer JD. Evolution of mushroom mitochondrial DNA: Suillus and related genera. Journal of Molecular Evolution. 28: 349-62. PMID 2499689 DOI: 10.1007/BF02103431  1
1988 Jansen RK, Palmer JD. PHYLOGENETIC IMPLICATIONS OF CHLOROPLAST DNA RESTRICTION SITE VARIATION IN THE MUTISIEAE (ASTERACEAE). American Journal of Botany. 75: 753-766. PMID 30139093 DOI: 10.1002/j.1537-2197.1988.tb13496.x  1
1988 Rieseberg LH, Soltis DE, Palmer JD. A MOLECULAR REEXAMINATION OF INTROGRESSION BETWEEN HELIANTHUS ANNUUS AND H. BOLANDERI (COMPOSITAE). Evolution; International Journal of Organic Evolution. 42: 227-238. PMID 28567846 DOI: 10.1111/j.1558-5646.1988.tb04127.x  0.56
1988 Bruns TD, Palmer JD, Shumard DS, Grossman LI, Hudspeth ME. Mitochondrial DNAs of Suillus: three fold size change in molecules that share a common gene order. Current Genetics. 13: 49-56. PMID 2834103 DOI: 10.1007/BF00365756  1
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