Justin Andrews - Publications

Affiliations: 
Indiana University, Bloomington, Bloomington, IN, United States 

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, et al. DNA copy number evolution in Drosophila cell lines. Genome Biology. 15: R70. PMID 25262759 DOI: 10.1186/Gb-2014-15-8-R70  1
2014 Zhong C, Andrews J, Zhang S. Discovering non-coding RNA elements in Drosophila 3' untranslated regions. International Journal of Bioinformatics Research and Applications. 10: 479-97. PMID 24989864 DOI: 10.1504/Ijbra.2014.062996  1
2014 Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, et al. Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines. Genome Research. 24: 1236-50. PMID 24985917 DOI: 10.1101/Gr.161554.113  1
2014 Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, ... ... Andrews J, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 512: 393-9. PMID 24670639 DOI: 10.1038/Nature12962  1
2013 Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, Eisman RC, Andrews J, Kaufman T, Cherbas P, Celniker SE, et al. Errata to Global patterns of tissue-specific alternative polyadenylation in drosophila [Cell Reports, 1 (2012) 277-289] Cell Reports. 3: 969. DOI: 10.1016/j.celrep.2013.03.022  1
2012 Kijimoto T, Moczek AP, Andrews J. Diversification of doublesex function underlies morph-, sex-, and species-specific development of beetle horns. Proceedings of the National Academy of Sciences of the United States of America. 109: 20526-31. PMID 23184999 DOI: 10.1073/Pnas.1118589109  1
2012 Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, Eisman RC, Andrews J, Kaufman T, Cherbas P, Celniker SE, et al. Global patterns of tissue-specific alternative polyadenylation in Drosophila. Cell Reports. 1: 277-89. PMID 22685694 DOI: 10.1016/J.Celrep.2012.01.001  1
2012 Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B. Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Genome Biology. 13: r28. PMID 22531030 DOI: 10.1186/Gb-2012-13-4-R28  1
2012 Cash AC, Andrews J. Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells. Bmc Developmental Biology. 12: 4. PMID 22252300 DOI: 10.1186/1471-213X-12-4  1
2012 Eads BD, Tsuchiya D, Andrews J, Lynch M, Zolan ME. The spread of a transposon insertion in Rec8 is associated with obligate asexuality in Daphnia. Proceedings of the National Academy of Sciences of the United States of America. 109: 858-63. PMID 22215604 DOI: 10.1073/Pnas.1119667109  1
2012 Zhong C, Andrews J, Zhang S. Discovering non-coding RNA elements in drosophila 3′ untranslated regions 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182650  1
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Andrews J, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761  1
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Andrews J, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715  1
2011 Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, Eads BD, Carlson JW, Landolin JM, Kapranov P, Dumais J, Samsonova A, Choi JH, Roberts J, Davis CA, Tang H, ... ... Andrews J, et al. The transcriptional diversity of 25 Drosophila cell lines. Genome Research. 21: 301-14. PMID 21177962 DOI: 10.1101/Gr.112961.110  1
2011 Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Research. 21: 182-92. PMID 21177961 DOI: 10.1101/Gr.112466.110  1
2011 Snell-Rood EC, Cash A, Han MV, Kijimoto T, Andrews J, Moczek AP. Developmental decoupling of alternative phenotypes: insights from the transcriptomes of horn-polyphenic beetles. Evolution; International Journal of Organic Evolution. 65: 231-45. PMID 20731717 DOI: 10.1111/J.1558-5646.2010.01106.X  1
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Andrews J, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  1
2010 Choi JH, Kijimoto T, Snell-Rood E, Tae H, Yang Y, Moczek AP, Andrews J. Gene discovery in the horned beetle Onthophagus taurus. Bmc Genomics. 11: 703. PMID 21156066 DOI: 10.1186/1471-2164-11-703  1
2010 Kijimoto T, Andrews J, Moczek AP. Programed cell death shapes the expression of horns within and between species of horned beetles. Evolution & Development. 12: 449-58. PMID 20883214 DOI: 10.1111/J.1525-142X.2010.00431.X  1
2010 Przytycka TM, Andrews J. Systems-biology dissection of eukaryotic cell growth Bmc Biology. 8. PMID 20529234 DOI: 10.1186/1741-7007-8-62  1
2009 Kijimoto T, Costello J, Tang Z, Moczek AP, Andrews J. EST and microarray analysis of horn development in Onthophagus beetles. Bmc Genomics. 10: 504. PMID 19878565 DOI: 10.1186/1471-2164-10-504  1
2009 Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biology. 10: R97. PMID 19758432 DOI: 10.1186/Gb-2009-10-9-R97  1
2008 Costello J, Cash AC, Dalkilic MM, Andrews J. Data pushing: a fly-centric guide to bioinformatics tools. Fly. 2: 1-18. PMID 18849648 DOI: 10.4161/Fly.5864  1
2008 Choi JH, Kim S, Tang H, Andrews J, Gilbert DG, Colbourne JK. A machine-learning approach to combined evidence validation of genome assemblies Bioinformatics. 24: 744-750. PMID 18204064 DOI: 10.1093/Bioinformatics/Btm608  1
2008 Eads BD, Andrews J, Colbourne JK. Ecological genomics in Daphnia: Stress responses and environmental sex determination Heredity. 100: 184-190. PMID 17519967 DOI: 10.1038/Sj.Hdy.6800999  1
2007 Eads BD, Colbourne JK, Bohuski E, Andrews J. Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex Bmc Genomics. 8. PMID 18088424 DOI: 10.1186/1471-2164-8-464  1
2007 Moczek AP, Andrews J, Kijimoto T, Yerushalmi Y, Rose DJ. Emerging model systems in evo-devo: horned beetles and the origins of diversity. Evolution & Development. 9: 323-8. PMID 17651356 DOI: 10.1111/J.1525-142X.2007.00168.X  1
2007 Colbourne JK, Eads BD, Shaw J, Bohuski E, Bauer DJ, Andrews J. Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes. Bmc Genomics. 8: 217. PMID 17612412 DOI: 10.1186/1471-2164-8-217  1
2007 Costello JC, Buchanan-Carter JE, Dalkilic MM, Andrews J. Using drosophila melanogaster data to discover disease-related protein interactions in humans 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 469-475.  1
2006 Eads B, Cash A, Bogart K, Costello J, Andrews J. Troubleshooting microarray hybridizations. Methods in Enzymology. 411: 34-49. PMID 16939784 DOI: 10.1016/S0076-6879(06)11003-4  1
2006 Burr A, Bogart K, Conaty J, Andrews J. [5] Automated Liquid Handling and High-Throughput Preparation of Polymerase Chain Reaction-Amplified DNA for Microarray Fabrication Methods in Enzymology. 410: 99-120. PMID 16938548 DOI: 10.1016/S0076-6879(06)10005-1  1
2006 Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH. Microarray analysis reveals differential gene expression in hybrid sunflower species. Molecular Ecology. 15: 1213-27. PMID 16626449 DOI: 10.1111/J.1365-294X.2006.02775.X  1
2005 Lai Z, Livingstone K, Zou Y, Church SA, Knapp SJ, Andrews J, Rieseberg LH. Identification and mapping of SNPs from ESTs in sunflower. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1532-44. PMID 16205907 DOI: 10.1007/S00122-005-0082-4  1
2003 Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science (New York, N.Y.). 299: 697-700. PMID 12511656 DOI: 10.1126/Science.1079190  1
2002 Andrews J, Oliver B. Sex determination signals control ovo-B transcription in Drosophila melanogaster germ cells. Genetics. 160: 537-45. PMID 11861560  1
2000 Andrews J, Bouffard GG, Cheadle C, Lü J, Becker KG, Oliver B. Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. Genome Research. 10: 2030-43. PMID 11116097 DOI: 10.1101/Gr.10.12.2030  1
2000 Andrews J, Garcia-Estefania D, Delon I, Lü J, Mével-Ninio M, Spierer A, Payre F, Pauli D, Oliver B. OVO transcription factors function antagonistically in the Drosophila female germline. Development (Cambridge, England). 127: 881-92. PMID 10648246  1
1998 Lü J, Andrews J, Pauli D, Oliver B. Drosophila OVO zinc-finger protein regulates ovo and ovarian tumor target promoters. Development Genes and Evolution. 208: 213-22. PMID 9634487 DOI: 10.1007/S004270050175  1
1998 Andrews J, Levenson I, Oliver B. New AUG initiation codons in a long 5' UTR create four dominant negative alleles of the Drosophila C2H2 zinc-finger gene ovo. Development Genes and Evolution. 207: 482-7. PMID 9510543 DOI: 10.1007/S004270050139  1
1996 Batterham P, Crew JR, Sokac AM, Andrews JR, Pasquini GM, Davies AG, Stocker RF, Pollock JA. Genetic analysis of the lozenge gene complex in Drosophila melanogaster: adult visual system phenotypes. Journal of Neurogenetics. 10: 193-220. PMID 8923295 DOI: 10.3109/01677069609083463  1
1996 Andrews J, Smith M, Merakovsky J, Coulson M, Hannan F, Kelly LE. The stoned locus of Drosophila melanogaster produces a dicistronic transcript and encodes two distinct polypeptides. Genetics. 143: 1699-711. PMID 8844157  1
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