Rupali P. Patwardhan, Ph.D. - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 

12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B. The Rhododendron genome and chromosomal organization provide insight into shared whole genome duplications across the heath family (Ericaceae). Genome Biology and Evolution. PMID 31702783 DOI: 10.1093/Gbe/Evz245  0.8
2015 Rosenberg AB, Patwardhan RP, Shendure J, Seelig G. Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences. Cell. 163: 698-711. PMID 26496609 DOI: 10.1016/J.Cell.2015.09.054  0.8
2014 Birnbaum RY, Patwardhan RP, Kim MJ, Findlay GM, Martin B, Zhao J, Bell RJ, Smith RP, Ku AA, Shendure J, Ahituv N. Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation. Plos Genetics. 10: e1004592. PMID 25340400 DOI: 10.1371/Journal.Pgen.1004592  0.8
2013 Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions Nature Biotechnology. 31: 1119-1125. PMID 24185095 DOI: 10.1038/Nbt.2727  0.8
2013 Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nature Genetics. 45: 1021-8. PMID 23892608 DOI: 10.1038/Ng.2713  0.8
2012 Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Massively parallel functional dissection of mammalian enhancers in vivo. Nature Biotechnology. 30: 265-70. PMID 22371081 DOI: 10.1038/Nbt.2136  0.8
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Patwardhan RP, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761  0.8
2011 Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63. PMID 21170042 DOI: 10.1038/Nbt.1740  0.8
2010 Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J. Parallel, tag-directed assembly of locally derived short sequence reads Nature Methods. 7: 119-122. PMID 20081835 DOI: 10.1038/Nmeth.1416  0.8
2009 Patwardhan RP, Lee C, Litvin O, Young DL, Pe'Er D, Shendure J. High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis Nature Biotechnology. 27: 1173-1175. PMID 19915551 DOI: 10.1038/Nbt.1589  0.8
2009 Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biology. 10: R97. PMID 19758432 DOI: 10.1186/Gb-2009-10-9-R97  0.8
2006 Patwardhan R, Haixu T, Sun K, Dalkilic M. An approximate de bruijn graph approach to multiple local alignment and motif discovery in protein sequences Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4316: 158-169.  0.8
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