Edward F. DeLong - Publications

Affiliations: 
1989-1991 Biology Woods Hole Oceanographic Inst. 
 1991-1998 Ecol, Evol. Marine Biology University of California, Santa Barbara, Santa Barbara, CA, United States 
 1997-2005 Science Dept. MBARI, Moss Landing, CA, United States 
 2004-2015 Depts of CEE and BE Massachusetts Institute of Technology, Cambridge, MA, United States 
 2014- C_MORE, Dept Oceanography University of Hawai‘i Manoa 
Area:
Microbiology, Ecology, Evolution, Genomics, Biogeochemistry, Oceanography
Website:
https://www.soest.hawaii.edu/oceanography/faculty/DeLong.html

229 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Li F, Burger A, Eppley JM, Poff KE, Karl DM, DeLong EF. Planktonic microbial signatures of sinking particle export in the open ocean's interior. Nature Communications. 14: 7177. PMID 37935690 DOI: 10.1038/s41467-023-42909-9  0.717
2023 Anstett J, Plominsky AM, DeLong EF, Kiesser A, Jürgens K, Morgan-Lang C, Stepanauskas R, Stewart FJ, Ulloa O, Woyke T, Malmstrom R, Hallam SJ. A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters. Scientific Data. 10: 332. PMID 37244914 DOI: 10.1038/s41597-023-02222-y  0.718
2023 Boysen AK, Carlson LT, Durham BP, Groussman RD, Aylward FO, Ribalet F, Heal KR, White AE, DeLong EF, Armbrust EV, Ingalls AE. Correction for Boysen et al., "Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean". Msystems. e0108322. PMID 36943103 DOI: 10.1128/msystems.01083-22  0.598
2023 Hackl T, Laurenceau R, Ankenbrand MJ, Bliem C, Cariani Z, Thomas E, Dooley KD, Arellano AA, Hogle SL, Berube P, Leventhal GE, Luo E, Eppley JM, Zayed AA, Beaulaurier J, ... ... DeLong EF, et al. Novel integrative elements and genomic plasticity in ocean ecosystems. Cell. 186: 47-62.e16. PMID 36608657 DOI: 10.1016/j.cell.2022.12.006  0.826
2022 Eppley JM, Biller SJ, Luo E, Burger A, DeLong EF. Marine viral particles reveal an expansive repertoire of phage-parasitizing mobile elements. Proceedings of the National Academy of Sciences of the United States of America. 119: e2212722119. PMID 36256808 DOI: 10.1073/pnas.2212722119  0.816
2022 Leu AO, Eppley JM, Burger A, DeLong EF. Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column. Mbio. e0156922. PMID 35862780 DOI: 10.1128/mbio.01569-22  0.786
2022 Linney MD, Eppley JM, Romano AE, Luo E, DeLong EF, Karl DM. Microbial Sources of Exocellular DNA in the Ocean. Applied and Environmental Microbiology. 88: e0209321. PMID 35311515 DOI: 10.1128/aem.02093-21  0.8
2022 Bongrand C, Koch E, Mende D, Romano A, Lawhorn S, McFall-Ngai M, DeLong EF, Ruby EG. Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host. Frontiers in Microbiology. 13: 854355. PMID 35300477 DOI: 10.3389/fmicb.2022.854355  0.678
2022 Luo E, Leu AO, Eppley JM, Karl DM, DeLong EF. Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean. The Isme Journal. PMID 35236926 DOI: 10.1038/s41396-022-01202-1  0.799
2022 Muratore D, Boysen AK, Harke MJ, Becker KW, Casey JR, Coesel SN, Mende DR, Wilson ST, Aylward FO, Eppley JM, Vislova A, Peng S, Rodriguez-Gonzalez RA, Beckett SJ, Virginia Armbrust E, ... DeLong EF, et al. Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature Ecology & Evolution. PMID 35058612 DOI: 10.1038/s41559-021-01606-w  0.827
2021 Li F, Leu A, Poff K, Carlson LT, Ingalls AE, DeLong EF. Planktonic Archaeal Ether Lipid Origins in Surface Waters of the North Pacific Subtropical Gyre. Frontiers in Microbiology. 12: 610675. PMID 34589060 DOI: 10.3389/fmicb.2021.610675  0.793
2021 Boeuf D, Eppley JM, Mende DR, Malmstrom RR, Woyke T, DeLong EF. Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage. Microbiome. 9: 172. PMID 34389059 DOI: 10.1186/s40168-021-01119-5  0.685
2021 Zhang Y, Ryan JP, Hobson BW, Kieft B, Romano A, Barone B, Preston CM, Roman B, Raanan BY, Pargett D, Dugenne M, White AE, Freitas FH, Poulos S, Wilson ST, ... DeLong EF, et al. A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum. Science Robotics. 6. PMID 34043577 DOI: 10.1126/scirobotics.abb9138  0.707
2021 Boysen AK, Carlson LT, Durham BP, Groussman RD, Aylward FO, Ribalet F, Heal KR, White AE, DeLong EF, Armbrust EV, Ingalls AE. Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean. Msystems. 6. PMID 33947808 DOI: 10.1128/mSystems.00896-20  0.679
2021 Poff KE, Leu AO, Eppley JM, Karl DM, DeLong EF. Microbial dynamics of elevated carbon flux in the open ocean's abyss. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33479184 DOI: 10.1073/pnas.2018269118  0.813
2021 DeLong EF. Genome-enabled exploration of microbial ecology and evolution in the sea: A rising tide lifts all boats. Environmental Microbiology. PMID 33459471 DOI: 10.1111/1462-2920.15403  0.312
2020 DeLong EF. Exploring Marine Planktonic Archaea: Then and Now. Frontiers in Microbiology. 11: 616086. PMID 33519774 DOI: 10.3389/fmicb.2020.616086  0.328
2020 Becker KW, Harke MJ, Mende DR, Muratore D, Weitz JS, DeLong EF, Dyhrman ST, Van Mooy BAS. Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean. The Isme Journal. PMID 33033374 DOI: 10.1038/s41396-020-00793-x  0.675
2020 Ponsero AJ, Bomhoff M, Blumberg K, Youens-Clark K, Herz NM, Wood-Charlson EM, Delong EF, Hurwitz BL. Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. Nucleic Acids Research. PMID 32735679 DOI: 10.1093/Nar/Gkaa637  0.409
2020 Qin W, Zheng Y, Zhao F, Wang Y, Urakawa H, Martens-Habbena W, Liu H, Huang X, Zhang X, Nakagawa T, Mende DR, Bollmann A, Wang B, Zhang Y, Amin SA, ... ... DeLong EF, et al. Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea. The Isme Journal. PMID 32636492 DOI: 10.1038/S41396-020-0710-7  0.78
2020 Beaulaurier J, Luo E, Eppley JM, Den Uyl P, Dai X, Burger A, Turner DJ, Pendleton M, Juul S, Harrington E, DeLong EF. Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities. Genome Research. PMID 32075851 DOI: 10.1101/Gr.251686.119  0.814
2020 Luo E, Eppley JM, Romano AE, Mende DR, DeLong EF. Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column. The Isme Journal. PMID 32060418 DOI: 10.1038/S41396-020-0604-8  0.823
2020 Martinez-Hernandez F, Luo E, Tominaga K, Ogata H, Yoshida T, DeLong EF, Martinez-Garcia M. Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses in Earth. Environmental Microbiology Reports. PMID 31997562 DOI: 10.1111/1758-2229.12825  0.782
2020 Zhang Y, Kieft B, Hobson BW, Ryan JP, Barone B, Preston CM, Roman B, Raanan B, Marin R, O’Reilly TC, Rueda CA, Pargett D, Yamahara KM, Poulos S, Romano A, ... ... DeLong EF, et al. Autonomous Tracking and Sampling of the Deep Chlorophyll Maximum Layer in an Open-Ocean Eddy by a Long-Range Autonomous Underwater Vehicle Ieee Journal of Oceanic Engineering. 1-14. DOI: 10.1109/Joe.2019.2920217  0.741
2019 Mende DR, Boeuf D, DeLong EF. Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre. Frontiers in Microbiology. 10: 2273. PMID 31632377 DOI: 10.3389/Fmicb.2019.02273  0.814
2019 Vislova A, Sosa OA, Eppley JM, Romano AE, DeLong EF. Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters. Frontiers in Microbiology. 10: 2191. PMID 31608031 DOI: 10.3389/Fmicb.2019.02191  0.823
2019 Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S, Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, ... ... DeLong EF, et al. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548428 DOI: 10.1073/Pnas.1907517116  0.824
2019 Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, et al. Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean. Science (New York, N.Y.). 365: 1040-1044. PMID 31488692 DOI: 10.1126/Science.Aax4767  0.551
2019 Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The Isme Journal. PMID 31320727 DOI: 10.1038/S41396-019-0472-2  0.809
2019 Boeuf D, Edwards BR, Eppley JM, Hu SK, Poff KE, Romano AE, Caron DA, Karl DM, DeLong EF. Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127042 DOI: 10.1073/Pnas.1903080116  0.818
2019 Sosa OA, Repeta DJ, DeLong EF, Ashkezari MD, Karl DM. Phosphate-limited ocean regions select for bacterial populations enriched in the carbon-phosphorus lyase pathway for phosphonate degradation. Environmental Microbiology. PMID 30972938 DOI: 10.1111/1462-2920.14628  0.808
2018 Olson DK, Yoshizawa S, Boeuf D, Iwasaki W, DeLong EF. Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre. The Isme Journal. PMID 29476140 DOI: 10.1038/S41396-018-0074-4  0.825
2018 Kumagai Y, Yoshizawa S, Nakajima Y, Watanabe M, Fukunaga T, Ogura Y, Hayashi T, Oshima K, Hattori M, Ikeuchi M, Kogure K, DeLong EF, Iwasaki W. Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia. The Isme Journal. PMID 29410487 DOI: 10.1038/S41396-018-0058-4  0.688
2017 Pelve EA, Fontanez KM, DeLong EF. Bacterial Succession on Sinking Particles in the Ocean's Interior. Frontiers in Microbiology. 8: 2269. PMID 29225592 DOI: 10.3389/Fmicb.2017.02269  0.817
2017 Luo E, Aylward FO, Mende DR, DeLong EF. Bacteriophage Distributions and Temporal Variability in the Ocean's Interior. Mbio. 8. PMID 29184020 DOI: 10.1128/Mbio.01903-17  0.833
2017 Sosa OA, Repeta DJ, Ferrón S, Bryant JA, Mende DR, Karl DM, DeLong EF. Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter. Frontiers in Microbiology. 8: 1786. PMID 29085339 DOI: 10.3389/Fmicb.2017.01786  0.82
2017 Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF. Diel cycling and long-term persistence of viruses in the ocean's euphotic zone. Proceedings of the National Academy of Sciences of the United States of America. 114: 11446-11451. PMID 29073070 DOI: 10.1073/Pnas.1714821114  0.812
2017 Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF. Environmental drivers of a microbial genomic transition zone in the ocean's interior. Nature Microbiology. PMID 28808230 DOI: 10.1038/S41564-017-0008-3  0.818
2017 Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, ... ... DeLong EF, et al. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera. Nature Microbiology. 2: 17118. PMID 28758990 DOI: 10.1038/Nmicrobiol.2017.118  0.751
2016 Boiteau RM, Mende DR, Hawco NJ, McIlvin MR, Fitzsimmons JN, Saito MA, Sedwick PN, DeLong EF, Repeta DJ. Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911777 DOI: 10.1073/Pnas.1608594113  0.749
2016 Gifford SM, Becker JW, Sosa OA, Repeta DJ, DeLong EF. Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter. Mbio. 7. PMID 27879330 DOI: 10.1128/Mbio.01279-16  0.815
2016 Bryant JA, Clemente TM, Viviani DA, Fong AA, Thomas KA, Kemp P, Karl DM, White AE, DeLong EF. Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre. Msystems. 1. PMID 27822538 DOI: 10.1128/mSystems.00024-16  0.758
2016 Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C. Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology. Microbiology and Molecular Biology Reviews : Mmbr. 80: 929-954. PMID 27630250 DOI: 10.1128/Mmbr.00003-16  0.69
2016 Hosaka T, Yoshizawa S, Nakajima Y, Ohsawa N, Hato M, DeLong EF, Kogure K, Yokoyama S, Kimura-Someya T, Iwasaki W, Shirouzu M. Structural mechanism for light-driven transport by a new type of chloride ion pump, Nonlabens marinus rhodopsin-3. The Journal of Biological Chemistry. PMID 27365396 DOI: 10.1074/Jbc.M116.728220  0.555
2016 Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF. Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies. Frontiers in Microbiology. 7: 143. PMID 26904016 DOI: 10.3389/Fmicb.2016.00143  0.789
2016 Shilova IN, Robidart JC, DeLong EF, Zehr JP. Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations. Plos One. 11: e0146706. PMID 26751368 DOI: 10.1371/Journal.Pone.0146706  0.435
2016 Repeta DJ, Ferrón S, Sosa OA, Johnson CG, Repeta LD, Acker M, DeLong EF, Karl DM. Marine methane paradox explained by bacterial degradation of dissolved organic matter Nature Geoscience. 9: 884-887. DOI: 10.1038/Ngeo2837  0.706
2015 Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF. Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre. The Isme Journal. PMID 26645474 DOI: 10.1038/Ismej.2015.221  0.821
2015 Fontanez KM, Eppley JM, Samo TJ, Karl DM, DeLong EF. Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre. Frontiers in Microbiology. 6: 469. PMID 26042105 DOI: 10.3389/Fmicb.2015.00469  0.828
2015 Sosa OA, Gifford SM, Repeta DJ, DeLong EF. High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures. The Isme Journal. PMID 25978545 DOI: 10.1038/Ismej.2015.68  0.816
2015 Astorga-Eló M, Ramírez-Flandes S, DeLong EF, Ulloa O. Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone. The Isme Journal. 9: 1268. PMID 25897776 DOI: 10.1038/ismej.2015.52  0.608
2015 Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences of the United States of America. 112: 5443-8. PMID 25775583 DOI: 10.1073/Pnas.1502883112  0.805
2015 Keffer JL, Sabanayagam CR, Lee ME, DeLong EF, Hahn MW, Maresca JA. Using total internal reflection fluorescence microscopy to visualize rhodopsin-containing cells. Applied and Environmental Microbiology. 81: 3442-50. PMID 25769822 DOI: 10.1128/Aem.00230-15  0.776
2015 Astorga-Eló M, Ramírez-Flandes S, DeLong EF, Ulloa O. Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone. The Isme Journal. 9: 1264-7. PMID 25700337 DOI: 10.1038/Ismej.2015.21  0.7
2014 Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ. Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile. Frontiers in Microbiology. 5: 543. PMID 25389417 DOI: 10.3389/Fmicb.2014.00543  0.755
2014 Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF. Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile. Mbio. 5: e01966. PMID 25352619 DOI: 10.1128/Mbio.01966-14  0.711
2014 DeLong EF. Alien invasions and gut "island biogeography". Cell. 159: 233-5. PMID 25303519 DOI: 10.1016/J.Cell.2014.09.043  0.603
2014 Lincoln SA, Wai B, Eppley JM, Church MJ, Summons RE, DeLong EF. Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean. Proceedings of the National Academy of Sciences of the United States of America. 111: E4286. PMID 25239231 DOI: 10.1073/Pnas.1416736111  0.763
2014 Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF. Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013). Standards in Genomic Sciences. 9: 1252-8. PMID 25197495 DOI: 10.4056/Sigs.5749944  0.588
2014 Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, ... ... DeLong EF, et al. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Standards in Genomic Sciences. 9: 632-45. PMID 25197450 DOI: 10.4056/Sigs.4998989  0.724
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  0.772
2014 Ottesen EA, Young CR, Gifford SM, Eppley JM, Marin R, Schuster SC, Scholin CA, DeLong EF. Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science (New York, N.Y.). 345: 207-12. PMID 25013074 DOI: 10.1126/Science.1252476  0.82
2014 Lincoln SA, Wai B, Eppley JM, Church MJ, Summons RE, DeLong EF. Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean. Proceedings of the National Academy of Sciences of the United States of America. 111: 9858-63. PMID 24946804 DOI: 10.1073/Pnas.1409439111  0.795
2014 Crowe SA, Maresca JA, Jones C, Sturm A, Henny C, Fowle DA, Cox RP, Delong EF, Canfield DE. Deep-water anoxygenic photosythesis in a ferruginous chemocline. Geobiology. 12: 322-39. PMID 24923179 DOI: 10.1111/Gbi.12089  0.808
2014 Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ. Closely related phytoplankton species produce similar suites of dissolved organic matter. Frontiers in Microbiology. 5: 111. PMID 24748874 DOI: 10.3389/Fmicb.2014.00111  0.818
2014 Yoshizawa S, Kumagai Y, Kim H, Ogura Y, Hayashi T, Iwasaki W, DeLong EF, Kogure K. Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 111: 6732-7. PMID 24706784 DOI: 10.1073/Pnas.1403051111  0.719
2014 Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. The Isme Journal. 8: 1440-51. PMID 24451205 DOI: 10.1038/Ismej.2013.243  0.673
2014 Sharma AK, Becker JW, Ottesen EA, Bryant JA, Duhamel S, Karl DM, Cordero OX, Repeta DJ, DeLong EF. Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade. Environmental Microbiology. 16: 2815-30. PMID 24118765 DOI: 10.1111/1462-2920.12254  0.81
2014 Ganesh S, Parris DJ, DeLong EF, Stewart FJ. Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone. The Isme Journal. 8: 187-211. PMID 24030599 DOI: 10.1038/Ismej.2013.144  0.772
2014 Murillo AA, Ramírez-Flandes S, DeLong EF, Ulloa O. Enhanced metabolic versatility of planktonic sulfur-oxidizing γ-proteobacteria in an oxygen-deficient coastal ecosystem Frontiers in Marine Science. 1. DOI: 10.3389/Fmars.2014.00018  0.433
2014 Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. The prokaryotes: Actinobacteria The Prokaryotes: Actinobacteria. 1-1061. DOI: 10.1007/978-3-642-30138-4  0.62
2014 Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. The prokaryotes: Firmicutes and tenericutes The Prokaryotes: Firmicutes and Tenericutes. 2147483647: 1-567. DOI: 10.1007/978-3-642-30120-9  0.605
2013 Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, et al. Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013. Standards in Genomic Sciences. 8: 561-70. PMID 24501639 DOI: 10.4056/Sigs.4638348  0.78
2013 Martínez A, Ventouras LA, Wilson ST, Karl DM, Delong EF. Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria. Frontiers in Microbiology. 4: 340. PMID 24324460 DOI: 10.3389/Fmicb.2013.00340  0.803
2013 DeLong EF. Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics. Methods in Enzymology. 531: xxi. PMID 24060136 DOI: 10.1016/B978-0-12-407863-5.09983-4  0.655
2013 Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR. Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts. The Isme Journal. 7: 1556-67. PMID 23619306 DOI: 10.1038/Ismej.2013.45  0.812
2013 Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, Scholin CA, DeLong EF. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences of the United States of America. 110: E488-97. PMID 23345438 DOI: 10.1073/Pnas.1222099110  0.836
2013 Cary SC, Campbell BJ, Delong EF. Studying the Deep Subsurface Biosphere: Emerging Technologies and Applications Geophysical Monograph. 144: 383-399. DOI: 10.1029/144Gm24  0.447
2013 Baross JA, Wilcock WSD, Kelley DS, Delong EF, Cary SC. The subsurface biosphere at mid-ocean ridges: Issues and challenges Geophysical Monograph. 144: 1-11. DOI: 10.1029/144Gm01  0.415
2013 Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. The prokaryotes: Gammaproteobacteria The Prokaryotes: Gammaproteobacteria. 1-768. DOI: 10.1007/978-3-642-38922-1  0.613
2013 Rosenberg E, DeLong EF, Thompson F, Lory S, Stackebrandt E. The prokaryotes: Applied bacteriology and biotechnology The Prokaryotes: Applied Bacteriology and Biotechnology. 2147483647: 1-393. DOI: 10.1007/978-3-642-31331-8  0.52
2013 Rosenberg E, DeLong EF, Thompson F, Lory S, Stackebrandt E. The prokaryotes: Prokaryotic biology and symbiotic associations The Prokaryotes: Prokaryotic Biology and Symbiotic Associations. 1-607. DOI: 10.1007/978-3-642-30194-0  0.539
2013 Rosenberg E, DeLong EF, Thompson F, Lory S, Stackebrandt E. The prokaryotes: Human microbiology The Prokaryotes: Human Microbiology. 1-554. DOI: 10.1007/978-3-642-30144-5  0.486
2013 Rosenberg E, DeLong EF, Thompson F, Lory S, Stackebrandt E. The prokaryotes: Prokaryotic physiology and biochemistry The Prokaryotes: Prokaryotic Physiology and Biochemistry. 1-662. DOI: 10.1007/978-3-642-30141-4  0.562
2012 Cordero OX, Ventouras LA, DeLong EF, Polz MF. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proceedings of the National Academy of Sciences of the United States of America. 109: 20059-64. PMID 23169633 DOI: 10.1073/Pnas.1213344109  0.792
2012 Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, et al. Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology. 14: 3043-65. PMID 23039259 DOI: 10.1111/J.1462-2920.2012.02891.X  0.667
2012 Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ. Microbial oceanography of anoxic oxygen minimum zones. Proceedings of the National Academy of Sciences of the United States of America. 109: 15996-6003. PMID 22967509 DOI: 10.1073/Pnas.1205009109  0.746
2012 Bryant JA, Stewart FJ, Eppley JM, DeLong EF. Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology. 93: 1659-73. PMID 22919912 DOI: 10.1890/11-1204.1  0.83
2012 Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF. Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton. Plos One. 7: e37118. PMID 22615914 DOI: 10.1371/Journal.Pone.0037118  0.813
2012 McSorley FR, Wyatt PB, Martinez A, DeLong EF, Hove-Jensen B, Zechel DL. PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond. Journal of the American Chemical Society. 134: 8364-7. PMID 22564006 DOI: 10.1021/Ja302072F  0.582
2012 DeLong EF. Evolution. Microbial evolution in the wild. Science (New York, N.Y.). 336: 422-4. PMID 22539708 DOI: 10.1126/Science.1221822  0.649
2012 Danhorn T, Young CR, DeLong EF. Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis. The Isme Journal. 6: 2056-66. PMID 22534608 DOI: 10.1038/Ismej.2012.35  0.813
2012 Martínez A, Osburne MS, Sharma AK, DeLong EF, Chisholm SW. Phosphite utilization by the marine picocyanobacterium Prochlorococcus MIT9301. Environmental Microbiology. 14: 1363-77. PMID 22004069 DOI: 10.1111/J.1462-2920.2011.02612.X  0.629
2012 Shi Y, McCarren J, DeLong EF. Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. Environmental Microbiology. 14: 191-206. PMID 21981709 DOI: 10.1111/J.1462-2920.2011.02598.X  0.823
2012 Stewart FJ, Ulloa O, DeLong EF. Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environmental Microbiology. 14: 23-40. PMID 21210935 DOI: 10.1111/J.1462-2920.2010.02400.X  0.783
2012 DeLong EF, Béjà O. Correction: The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times Plos Biology. 10. DOI: 10.1371/annotation/05d3c1ef-0aad-4592-ab8d-6863fbdf73f9  0.548
2012 Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. The prokaryotes: Prokaryotic communities and ecophysiology The Prokaryotes: Prokaryotic Communities and Ecophysiology. 1-528. DOI: 10.1007/978-3-642-30123-0  0.56
2011 Grote J, Bayindirli C, Bergauer K, Carpintero de Moraes P, Chen H, D'Ambrosio L, Edwards B, Fernández-Gómez B, Hamisi M, Logares R, Nguyen D, Rii YM, Saeck E, Schutte C, Widner B, ... ... Delong EF, et al. Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Standards in Genomic Sciences. 5: 269-78. PMID 22675578 DOI: 10.4056/Sigs.1854551  0.809
2011 Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland ED, Gomez ML, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science (New York, N.Y.). 333: 1296-300. PMID 21885783 DOI: 10.1126/Science.1203690  0.8
2011 Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM. Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Frontiers in Microbiology. 2: 134. PMID 21738524 DOI: 10.3389/Fmicb.2011.00134  0.812
2011 Ottesen EA, Marin R, Preston CM, Young CR, Ryan JP, Scholin CA, DeLong EF. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The Isme Journal. 5: 1881-95. PMID 21716310 DOI: 10.1038/Ismej.2011.70  0.815
2011 Kimura H, Young CR, Martinez A, Delong EF. Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium. The Isme Journal. 5: 1641-51. PMID 21472017 DOI: 10.1038/Ismej.2011.36  0.706
2011 Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. Genome Biology. 12: R26. PMID 21426537 DOI: 10.1186/Gb-2011-12-3-R26  0.826
2011 Shi Y, Tyson GW, Eppley JM, DeLong EF. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. The Isme Journal. 5: 999-1013. PMID 21151004 DOI: 10.1038/Ismej.2010.189  0.837
2011 Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF. Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray. Environmental Microbiology. 13: 116-34. PMID 20695878 DOI: 10.1111/J.1462-2920.2010.02314.X  0.814
2010 Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, et al. Meeting Report: BioSharing at ISMB 2010. Standards in Genomic Sciences. 3: 254-8. PMID 21304729 DOI: 10.4056/Sigs/1403501  0.621
2010 Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O. Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010. Standards in Genomic Sciences. 3: 232-4. PMID 21304724 DOI: 10.4056/Sigs.1383476  0.589
2010 Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O. A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science (New York, N.Y.). 330: 1375-8. PMID 21071631 DOI: 10.1126/Science.1196889  0.729
2010 McCarren J, Becker JW, Repeta DJ, Shi Y, Young CR, Malmstrom RR, Chisholm SW, DeLong EF. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proceedings of the National Academy of Sciences of the United States of America. 107: 16420-7. PMID 20807744 DOI: 10.1073/Pnas.1010732107  0.823
2010 Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, ... ... DeLong EF, et al. Climate change and the integrity of science. Science (New York, N.Y.). 328: 689-90. PMID 20448167 DOI: 10.1126/Science.328.5979.689  0.648
2010 DeLong EF, Béjà O. The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times. Plos Biology. 8: e1000359. PMID 20436957 DOI: 10.1371/Journal.Pbio.1000359  0.627
2010 Stewart FJ, Ottesen EA, DeLong EF. Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. The Isme Journal. 4: 896-907. PMID 20220791 DOI: 10.1038/Ismej.2010.18  0.826
2010 Church MJ, Wai B, Karl DM, DeLong EF. Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environmental Microbiology. 12: 679-88. PMID 20002133 DOI: 10.1111/J.1462-2920.2009.02108.X  0.722
2010 Martinez A, Tyson GW, Delong EF. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environmental Microbiology. 12: 222-38. PMID 19788654 DOI: 10.1111/J.1462-2920.2009.02062.X  0.741
2010 DeLong EF. Interesting things come in small packages Genome Biology. 11. DOI: 10.1186/Gb-2010-11-5-118  0.615
2009 Maresca JA, Braff JC, Delong EF. Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium. Environmental Microbiology Reports. 1: 524-34. PMID 23765931 DOI: 10.1111/J.1758-2229.2009.00075.X  0.821
2009 Konstantinidis KT, Braff J, Karl DM, DeLong EF. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Applied and Environmental Microbiology. 75: 5345-55. PMID 19542347 DOI: 10.1128/Aem.00473-09  0.839
2009 Shi Y, Tyson GW, DeLong EF. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature. 459: 266-9. PMID 19444216 DOI: 10.1038/Nature08055  0.837
2009 DeLong EF. The microbial ocean from genomes to biomes. Nature. 459: 200-6. PMID 19444206 DOI: 10.1038/Nature08059  0.677
2009 Preston CM, Marin R, Jensen SD, Feldman J, Birch JM, Massion EI, Delong EF, Suzuki M, Wheeler K, Scholin CA. Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental Microbiology. 11: 1168-80. PMID 19210704 DOI: 10.1111/J.1462-2920.2009.01848.X  0.798
2009 Pham VD, Hnatow LL, Zhang S, Fallon RD, Jackson SC, Tomb JF, DeLong EF, Keeler SJ. Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environmental Microbiology. 11: 176-87. PMID 18771500 DOI: 10.1111/J.1462-2920.2008.01751.X  0.79
2008 Konstantinidis KT, DeLong EF. Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. The Isme Journal. 2: 1052-65. PMID 18580971 DOI: 10.1038/Ismej.2008.62  0.746
2008 Falkowski PG, Fenchel T, Delong EF. The microbial engines that drive Earth's biogeochemical cycles. Science (New York, N.Y.). 320: 1034-9. PMID 18497287 DOI: 10.1126/Science.1153213  0.625
2008 Pham VD, Konstantinidis KT, Palden T, DeLong EF. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environmental Microbiology. 10: 2313-30. PMID 18494796 DOI: 10.1111/J.1462-2920.2008.01657.X  0.831
2008 Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF. Microbial community gene expression in ocean surface waters. Proceedings of the National Academy of Sciences of the United States of America. 105: 3805-10. PMID 18316740 DOI: 10.1073/Pnas.0708897105  0.831
2008 Rich VI, Konstantinidis K, DeLong EF. Design and testing of 'genome-proxy' microarrays to profile marine microbial communities. Environmental Microbiology. 10: 506-21. PMID 18028413 DOI: 10.1111/J.1462-2920.2007.01471.X  0.824
2008 Karl DM, Beversdorf L, Björkman KM, Church MJ, Martinez A, Delong EF. Aerobic production of methane in the sea Nature Geoscience. 1: 473-478. DOI: 10.1038/Ngeo234  0.533
2007 DeLong EF. Modern microbial seascapes. Forward. Nature Reviews. Microbiology. 5: 755-7. PMID 19086145 DOI: 10.1038/Nrmicro1762  0.6
2007 DeLong EF. Microbial communities in nature and laboratory--interview. Journal of Visualized Experiments : Jove. 202. PMID 18979006 DOI: 10.3791/202  0.62
2007 Pham VD, Palden T, DeLong EF. Large-scale screens of metagenomic libraries. Journal of Visualized Experiments : Jove. 201. PMID 18979005 DOI: 10.3791/201  0.75
2007 Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, Delong EF, Amann R, Glöckner FO. Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. The Isme Journal. 1: 419-35. PMID 18043661 DOI: 10.1038/Ismej.2007.63  0.684
2007 Zehr JP, Bench SR, Mondragon EA, McCarren J, DeLong EF. Low genomic diversity in tropical oceanic N2-fixing cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 17807-12. PMID 17971441 DOI: 10.1073/Pnas.0701017104  0.829
2007 DeLong EF. Microbiology. Life on the thermodynamic edge. Science (New York, N.Y.). 317: 327-8. PMID 17641187 DOI: 10.1126/Science.1145970  0.604
2007 Giaquinto L, Curmi PM, Siddiqui KS, Poljak A, DeLong E, DasSarma S, Cavicchioli R. Structure and function of cold shock proteins in archaea. Journal of Bacteriology. 189: 5738-48. PMID 17545280 DOI: 10.1128/Jb.00395-07  0.623
2007 Mincer TJ, Church MJ, Taylor LT, Preston C, Karl DM, DeLong EF. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environmental Microbiology. 9: 1162-75. PMID 17472632 DOI: 10.1111/J.1462-2920.2007.01239.X  0.838
2007 Martinez A, Bradley AS, Waldbauer JR, Summons RE, DeLong EF. Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host Proceedings of the National Academy of Sciences of the United States of America. 104: 5590-5595. PMID 17372221 DOI: 10.1073/Pnas.0611470104  0.395
2007 McCarren J, DeLong EF. Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environmental Microbiology. 9: 846-58. PMID 17359257 DOI: 10.1111/J.1462-2920.2006.01203.X  0.835
2007 DeLong E. Microbial Domains in the Ocean: A Lesson from the Archaea Oceanography. 20: 124-129. DOI: 10.5670/Oceanog.2007.56  0.591
2007 DeLong EF. Sea change for metagenomics? Nature Reviews Microbiology. 5: 326. DOI: 10.1038/Nrmicro1674  0.313
2006 Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, DeLong EF. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proceedings of the National Academy of Sciences of the United States of America. 103: 18296-301. PMID 17114289 DOI: 10.1073/Pnas.0608549103  0.831
2006 Yoshinari S, Itoh T, Hallam SJ, DeLong EF, Yokobori S, Yamagishi A, Oshima T, Kita K, Watanabe Y. Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease. Biochemical and Biophysical Research Communications. 346: 1024-32. PMID 16781672 DOI: 10.1016/J.Bbrc.2006.06.011  0.536
2006 DeLong EF. Archaeal mysteries of the deep revealed. Proceedings of the National Academy of Sciences of the United States of America. 103: 6417-8. PMID 16618931 DOI: 10.1073/Pnas.0602079103  0.374
2006 Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, Delong EF, Chisholm SW. Genomic islands and the ecology and evolution of Prochlorococcus. Science (New York, N.Y.). 311: 1768-70. PMID 16556843 DOI: 10.1126/Science.1122050  0.458
2006 Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM, DeLong EF. Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. Plos Biology. 4: e95. PMID 16533068 DOI: 10.1371/Journal.Pbio.0040095  0.814
2006 Frigaard NU, Martinez A, Mincer TJ, DeLong EF. Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature. 439: 847-50. PMID 16482157 DOI: 10.1038/Nature04435  0.826
2006 Grzymski JJ, Carter BJ, DeLong EF, Feldman RA, Ghadiri A, Murray AE. Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria. Applied and Environmental Microbiology. 72: 1532-41. PMID 16461708 DOI: 10.1128/Aem.72.2.1532-1541.2006  0.393
2006 DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM. Community genomics among stratified microbial assemblages in the ocean's interior. Science (New York, N.Y.). 311: 496-503. PMID 16439655 DOI: 10.1126/Science.1120250  0.836
2006 DeLong E, Hallam S, Mincer T, Schleper C, Preston C, Roberts K, Richardson P. Correction: Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota Plos Biology. 4: e437. DOI: 10.1371/journal.pbio.0040437  0.801
2006 DeLong EF, Karl DM. Erratum: Corrigendum: Genomic perspectives in microbial oceanography Nature. 439: 1014-1014. DOI: 10.1038/Nature04573  0.507
2005 DeLong EF, Karl DM. Genomic perspectives in microbial oceanography. Nature. 437: 336-42. PMID 16163343 DOI: 10.1038/Nature04157  0.588
2005 Schirmer A, Gadkari R, Reeves CD, Ibrahim F, DeLong EF, Hutchinson CR. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Applied and Environmental Microbiology. 71: 4840-9. PMID 16085882 DOI: 10.1128/Aem.71.8.4840-4849.2005  0.43
2005 Cubonová L, Sandman K, Hallam SJ, Delong EF, Reeve JN. Histones in crenarchaea. Journal of Bacteriology. 187: 5482-5. PMID 16030242 DOI: 10.1128/Jb.187.15.5482-5485.2005  0.52
2005 Girguis PR, Cozen AE, DeLong EF. Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a continuous-flow bioreactor. Applied and Environmental Microbiology. 71: 3725-33. PMID 16000782 DOI: 10.1128/Aem.71.7.3725-3733.2005  0.587
2005 DeLong EF. Microbial community genomics in the ocean. Nature Reviews. Microbiology. 3: 459-69. PMID 15886695 DOI: 10.1038/Nrmicro1158  0.457
2004 Suzuki MT, Preston CM, Béjà O, de la Torre JR, Steward GF, DeLong EF. Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay. Microbial Ecology. 48: 473-88. PMID 15696381 DOI: 10.1007/S00248-004-0213-5  0.728
2004 DeLong EF. Microbiology. Microbial life breathes deep. Science (New York, N.Y.). 306: 2198-200. PMID 15622564 DOI: 10.1126/Science.1107241  0.394
2004 Hallam SJ, Putnam N, Preston CM, Detter JC, Rokhsar D, Richardson PM, DeLong EF. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science (New York, N.Y.). 305: 1457-62. PMID 15353801 DOI: 10.1126/Science.1100025  0.774
2004 Sabehi G, Béjà O, Suzuki MT, Preston CM, DeLong EF. Different SAR86 subgroups harbour divergent proteorhodopsins. Environmental Microbiology. 6: 903-10. PMID 15305915 DOI: 10.1111/J.1462-2920.2004.00676.X  0.821
2004 DeLong EF. Microbial population genomics and ecology: the road ahead. Environmental Microbiology. 6: 875-8. PMID 15305912 DOI: 10.1111/J.1462-2920.2004.00668.X  0.369
2004 Delong EF. Microbiology: reconstructing the wild types. Nature. 428: 25-6. PMID 14999264 DOI: 10.1038/428025A  0.384
2003 de la Torre JR, Christianson LM, Béjà O, Suzuki MT, Karl DM, Heidelberg J, DeLong EF. Proteorhodopsin genes are distributed among divergent marine bacterial taxa. Proceedings of the National Academy of Sciences of the United States of America. 100: 12830-5. PMID 14566056 DOI: 10.1073/Pnas.2133554100  0.779
2003 Sabehi G, Massana R, Bielawski JP, Rosenberg M, Delong EF, Béjà O. Novel Proteorhodopsin variants from the Mediterranean and Red Seas. Environmental Microbiology. 5: 842-9. PMID 14510837 DOI: 10.1046/J.1462-2920.2003.00493.X  0.773
2003 Hallam SJ, Girguis PR, Preston CM, Richardson PM, DeLong EF. Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Applied and Environmental Microbiology. 69: 5483-91. PMID 12957937 DOI: 10.1128/Aem.69.9.5483-5491.2003  0.816
2003 Girguis PR, Orphan VJ, Hallam SJ, DeLong EF. Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor. Applied and Environmental Microbiology. 69: 5472-82. PMID 12957936 DOI: 10.1128/Aem.69.9.5472-5482.2003  0.774
2003 Zeidner G, Preston CM, Delong EF, Massana R, Post AF, Scanlan DJ, Béjà O. Molecular diversity among marine picophytoplankton as revealed by psbA analyses. Environmental Microbiology. 5: 212-6. PMID 12588300 DOI: 10.1046/J.1462-2920.2003.00403.X  0.788
2003 Church MJ, DeLong EF, Ducklow HW, Karner MB, Preston CM, Karl DM. Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula Limnology and Oceanography. 48: 1893-1902. DOI: 10.4319/Lo.2003.48.5.1893  0.741
2003 Orphan VJ, Goffredi SK, Delong EF, Boles JR. Geochemical influence on diversity and microbial processes in high temperature oil reservoirs Geomicrobiology Journal. 20: 295-311. DOI: 10.1080/01490450303898  0.632
2002 DeLong EF. Microbiology: all in the packaging. Nature. 419: 676-7. PMID 12384680 DOI: 10.1038/419676A  0.304
2002 DeLong EF. Microbial population genomics and ecology. Current Opinion in Microbiology. 5: 520-4. PMID 12354561 DOI: 10.1016/S1369-5274(02)00353-3  0.406
2002 Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments Proceedings of the National Academy of Sciences of the United States of America. 99: 7663-7668. PMID 12032340 DOI: 10.1073/Pnas.072210299  0.652
2002 DeLong EF. Towards microbial systems science: integrating microbial perspective, from genomes to biomes. Environmental Microbiology. 4: 9-10. PMID 11966814 DOI: 10.1046/J.1462-2920.2002.T01-12-00257.X  0.351
2002 Béjà O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, Hamada T, Eisen JA, Fraser CM, DeLong EF. Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature. 415: 630-3. PMID 11832943 DOI: 10.1038/415630A  0.831
2002 Pernthaler A, Preston CM, Pernthaler J, DeLong EF, Amann R. Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Applied and Environmental Microbiology. 68: 661-7. PMID 11823205 DOI: 10.1128/Aem.68.2.661-667.2002  0.693
2002 Béjà O, Koonin EV, Aravind L, Taylor LT, Seitz H, Stein JL, Bensen DC, Feldman RA, Swanson RV, DeLong EF. Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Applied and Environmental Microbiology. 68: 335-45. PMID 11772643 DOI: 10.1128/Aem.68.1.335-345.2002  0.705
2002 Wirsen CO, Sievert SM, Cavanaugh CM, Molyneaux SJ, Ahmad A, Taylor LT, DeLong EF, Taylor CD. Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Applied and Environmental Microbiology. 68: 316-25. PMID 11772641 DOI: 10.1128/Aem.68.1.316-325.2002  0.613
2001 DeLong EF, Pace NR. Environmental diversity of bacteria and archaea. Systematic Biology. 50: 470-8. PMID 12116647 DOI: 10.1080/10635150118513  0.619
2001 Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis Science. 293: 484-487. PMID 11463914 DOI: 10.1126/Science.1061338  0.636
2001 Béjà O, Spudich EN, Spudich JL, Leclerc M, DeLong EF. Proteorhodopsin phototrophy in the ocean. Nature. 411: 786-9. PMID 11459054 DOI: 10.1038/35081051  0.659
2001 Suzuki MT, Béjà O, Taylor LT, Delong EF. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environmental Microbiology. 3: 323-31. PMID 11422319 DOI: 10.1046/J.1462-2920.2001.00198.X  0.663
2001 DeLong EF. Microbial seascapes revisited Current Opinion in Microbiology. 4: 290-295. PMID 11378481 DOI: 10.1016/S1369-5274(00)00205-8  0.369
2001 Orphan VJ, Hinrichs KU, Ussler W, Paull CK, Taylor LT, Sylva SP, Hayes JM, Delong EF. Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Applied and Environmental Microbiology. 67: 1922-34. PMID 11282650 DOI: 10.1128/Aem.67.4.1922-1934.2001  0.633
2001 DeLong EF. A phylogenetic perspective on hyperthermophilic microorganisms Methods in Enzymology. 330: 3-11. PMID 11210508 DOI: 10.1016/S0076-6879(01)30366-X  0.346
2001 Karner MB, Delong EF, Karl DM. Archaeal dominance in the mesopelagic zone of the Pacific Ocean Nature. 409: 507-510. PMID 11206545 DOI: 10.1038/35054051  0.592
2001 Suzuki MT, Preston CM, Chavez FP, DeLong EF. Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay Aquatic Microbial Ecology. 24: 117-127. DOI: 10.3354/Ame024117  0.782
2000 Béjà O, Suzuki MT, Koonin EV, Aravind L, Hadd A, Nguyen LP, Villacorta R, Amjadi M, Garrigues C, Jovanovich SB, Feldman RA, DeLong EF. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environmental Microbiology. 2: 516-29. PMID 11233160 DOI: 10.1046/J.1462-2920.2000.00133.X  0.472
2000 Suzuki MT, Taylor LT, DeLong EF. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Applied and Environmental Microbiology. 66: 4605-14. PMID 11055900 DOI: 10.1128/Aem.66.11.4605-4614.2000  0.365
2000 DeLong EF. Resolving a methane mystery Nature. 407: 577-579. PMID 11034193 DOI: 10.1038/35036677  0.361
2000 Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP, Jovanovich SB, Gates CM, Feldman RA, Spudich JL, Spudich EN, DeLong EF. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science (New York, N.Y.). 289: 1902-6. PMID 10988064 DOI: 10.1126/Science.289.5486.1902  0.666
2000 Massana R, Delong EF, Pedrós-Alió C. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces Applied and Environmental Microbiology. 66: 1777-1787. PMID 10788339 DOI: 10.1128/Aem.66.5.1777-1787.2000  0.63
2000 Orphan VJ, Taylor LT, Hafenbradl D, Delong EF. Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology. 66: 700-11. PMID 10653739 DOI: 10.1128/Aem.66.2.700-711.2000  0.633
1999 Delong EF, Schleper C, Feldman R, Swanson RV. Application of genomics for understanding the evolution of hyperthermophilic and nonthermophilic crenarchaeota Biological Bulletin. 196: 363-366. PMID 11536912 DOI: 10.2307/1542971  0.676
1999 DeLong EF, Taylor LT, Marsh TL, Preston CM. Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Applied and Environmental Microbiology. 65: 5554-63. PMID 10584017 DOI: 10.1128/Aem.65.12.5554-5563.1999  0.681
1999 Hinrichs KU, Hayes JM, Sylva SP, Brewer PG, DeLong EF. Methane-consuming archaebacteria in marine sediments. Nature. 398: 802-5. PMID 10235261 DOI: 10.1038/19751  0.419
1999 Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ. Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker. Journal of Bacteriology. 181: 907-15. PMID 9922255 DOI: 10.1128/Jb.181.3.907-915.1999  0.714
1999 Murray AE, Blakis A, Massana R, Strawzewski S, Passow U, Alldredge A, DeLong EF. A time series assessment of planktonic archaeal variability in the Santa Barbara Channel Aquatic Microbial Ecology. 20: 129-145. DOI: 10.3354/Ame020129  0.68
1999 Murray AE, Wu KY, Moyer CL, Karl DM, DeLong EF. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean Aquatic Microbial Ecology. 18: 263-273. DOI: 10.3354/Ame018263  0.403
1999 Caron DA, Lim EL, Dennett MR, Gast RJ, Kosman C, DeLong EF. Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species Journal of Phycology. 35: 824-837. DOI: 10.1046/J.1529-8817.1999.3540824.X  0.328
1998 Hovanec TA, Taylor LT, Blakis A, Delong EF. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Applied and Environmental Microbiology. 64: 258-64. PMID 16349486 DOI: 10.1128/Aem.64.1.258-264.1998  0.802
1998 Delong EF. Everything in moderation: Archaea as 'non-extremophiles' Current Opinion in Genetics and Development. 8: 649-654. PMID 9914204 DOI: 10.1016/S0959-437X(98)80032-4  0.358
1998 Schleper C, DeLong EF, Preston CM, Feldman RA, Wu KY, Swanson RV. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. Journal of Bacteriology. 180: 5003-9. PMID 9748430 DOI: 10.1128/Jb.180.19.5003-5009.1998  0.796
1998 Vergin KL, Urbach E, Stein JL, DeLong EF, Lanoil BD, Giovannoni SJ. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales Applied and Environmental Microbiology. 64: 3075-3078. PMID 9687477 DOI: 10.1128/Aem.64.8.3075-3078.1998  0.372
1998 Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K, DeLong EF. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Applied and Environmental Microbiology. 64: 2585-95. PMID 9647834 DOI: 10.1128/Aem.64.7.2585-2595.1998  0.767
1998 DeLong E. Archael means and extremes. Science (New York, N.Y.). 280: 542-3. PMID 9575100 DOI: 10.1126/Science.280.5363.542  0.649
1998 DeLong EF, King LL, Massana R, Cittone H, Murray A, Schleper C, Wakeham SG. Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes Applied and Environmental Microbiology. 64: 1133-1138. PMID 9501451 DOI: 10.1128/Aem.64.3.1133-1138.1998  0.685
1998 Massana R, Taylor LT, Murray AE, Wu KY, Jeffrey WH, DeLong EF. Vertical distribution and temporal variation of marine planktonic archaea in the Gerlache Strait, Antarctica, during early spring Limnology and Oceanography. 43: 607-617. DOI: 10.4319/Lo.1998.43.4.0607  0.625
1998 Rath J, Wu KY, Herndl GJ, DeLong EF. High phylogenetic diversity in a marine-snow-associated bacterial assemblage Aquatic Microbial Ecology. 14: 261-269. DOI: 10.3354/Ame014261  0.455
1998 Hovanec TA, Taylor LT, Blakis A, Delong EF. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria Applied and Environmental Microbiology. 64: 258-264.  0.802
1997 Schleper C, Swanson RV, Mathur EJ, Delong EF. Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum Journal of Bacteriology. 179: 7803-7811. PMID 9401041 DOI: 10.1128/Jb.179.24.7803-7811.1997  0.613
1997 DeLong EF. Marine microbial diversity: The tip of the iceberg Trends in Biotechnology. 15: 203-207. PMID 9183862 DOI: 10.1016/S0167-7799(97)01044-5  0.397
1997 Massana R, Murray AE, Preston CM, DeLong EF. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Applied and Environmental Microbiology. 63: 50-6. PMID 8979338 DOI: 10.1128/Aem.63.1.50-56.1997  0.787
1997 DeLong EF, Franks DG, Yayanos AA. Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria Applied and Environmental Microbiology. 63: 2105-2108. DOI: 10.1128/Aem.63.5.2105-2108.1997  0.684
1996 Preston CM, Wu KY, Molinski TF, DeLong EF. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proceedings of the National Academy of Sciences of the United States of America. 93: 6241-6. PMID 8692799 DOI: 10.1073/Pnas.93.13.6241  0.702
1996 Stein JL, Marsh TL, Wu KY, Shizuya H, Delong EF. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon Journal of Bacteriology. 178: 591-599. PMID 8550487 DOI: 10.1128/Jb.178.3.591-599.1996  0.452
1996 Hovanec TA, DeLong EF. Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Applied and Environmental Microbiology. 62: 2888-2896. DOI: 10.1128/Aem.62.8.2888-2896.1996  0.796
1995 Brantley SE, Molinski TF, Preston CM, DeLong EF. Brominated acetylenic fatty acids from Xestospongia sp., a marine spongebacteria association Tetrahedron. 51: 7667-7672. DOI: 10.1016/0040-4020(95)00405-W  0.629
1994 DeLong EF, Wu KY, Prézelin BB, Jovine RVM. High abundance of Archaea in Antarctic marine picoplankton Nature. 371: 695-697. PMID 7935813 DOI: 10.1038/371695A0  0.415
1993 DiChristina TJ, DeLong EF. Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens Applied and Environmental Microbiology. 59: 4152-4160. PMID 7506899 DOI: 10.1128/Aem.59.12.4152-4160.1993  0.327
1993 Delong EF, Franks DG, Alldredge AL. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages Limnology & Oceanography. 38: 924-934. DOI: 10.4319/Lo.1993.38.5.0924  0.71
1993 DeLong EF, Frankel RB, Bazylinski DA. Multiple evolutionary origins of magnetotaxis in bacteria Science. 259: 803-806. DOI: 10.1126/Science.259.5096.803  0.312
1993 Ledyard KM, DeLong EF, Dacey JWH. Characterization of a DMSP-degrading bacterial isolate from the Sargasso Sea Archives of Microbiology. 160: 312-318. DOI: 10.1007/Bf00292083  0.387
1992 DeLong EF. Archaea in coastal marine environments Proceedings of the National Academy of Sciences of the United States of America. 89: 5685-5689. PMID 1608980 DOI: 10.1073/Pnas.89.12.5685  0.455
1991 Schmidt TM, DeLong EF, Pace NR. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. Journal of Bacteriology. 173: 4371-8. PMID 2066334 DOI: 10.1128/Jb.173.14.4371-4378.1991  0.607
1990 Giovannoni SJ, DeLong EF, Schmidt TM, Pace NR. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Applied and Environmental Microbiology. 56: 2572-5. PMID 2403262 DOI: 10.1128/Aem.56.8.2572-2575.1990  0.568
1989 DeLong EF, Wickham GS, Pace NR. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells Science. 243: 1360-1363. PMID 2466341 DOI: 10.1126/Science.2466341  0.688
1988 Giovannoni SJ, DeLong EF, Olsen GJ, Pace NR. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells Journal of Bacteriology. 170: 720-726. PMID 2448289 DOI: 10.1128/Jb.170.2.720-726.1988  0.551
1987 DeLong EF, Yayanos AA. Properties of the glucose transport system in some deep-sea bacteria Applied and Environmental Microbiology. 53: 527-532. DOI: 10.1128/Aem.53.3.527-532.1987  0.621
1986 DeLong EF, Yayanos AA. Biochemical function and ecological significance of novel bacterial lipids in deep-sea procaryotes Applied and Environmental Microbiology. 51: 730-737. DOI: 10.1128/Aem.51.4.730-737.1986  0.632
1985 DeLong EF, Yayanos AA. Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure Science. 228: 1101-1103. PMID 3992247 DOI: 10.1126/Science.3992247  0.637
1984 DeLong EF, Baumann L, Bowditch RD, Baumann P. Evolutionary relationships of superoxide dismutases and glutamine synthetases from marine species of Alteromonas, Oceanospirillum, Pseudomonas and Deleya Archives of Microbiology. 138: 170-178. DOI: 10.1007/Bf00413018  0.582
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