John Comstock Doyle - Publications

Affiliations: 
California Institute of Technology, Pasadena, CA 
Area:
Control and Dynamical Systems
Website:
http://eas.caltech.edu/people/doyle

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Nakahira Y, Liu Q, Sejnowski TJ, Doyle JC. Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34050009 DOI: 10.1073/pnas.1916367118  0.48
2020 Liu Q, Nakahira Y, Liang Z, Mohideen A, Dai A, Choi SH, Pan A, Ho DM, Doyle JC. WheelCon: A Wheel Control-Based Gaming Platform for Studying Human Sensorimotor Control. Journal of Visualized Experiments : Jove. PMID 32865525 DOI: 10.3791/61092  0.48
2019 Olsman N, Baetica AA, Xiao F, Leong YP, Murray RM, Doyle JC. Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks. Cell Systems. PMID 31279505 DOI: 10.1016/J.Cels.2019.06.001  0.4
2019 Olsman N, Xiao F, Doyle JC. Architectural Principles for Characterizing the Performance of Antithetic Integral Feedback Networks. Iscience. 14: 277-291. PMID 31015073 DOI: 10.1016/J.Isci.2019.04.004  0.32
2019 Wang Y, Matni N, Doyle JC. A System-Level Approach to Controller Synthesis Ieee Transactions On Automatic Control. 64: 4079-4093. DOI: 10.1109/Tac.2018.2890753  0.48
2019 Anderson J, Doyle JC, Low SH, Matni N. System level synthesis Annual Reviews in Control. 47: 364-393. DOI: 10.1016/J.Arcontrol.2019.03.006  0.76
2018 Olsman N, Xiao F, Doyle J. Evaluation of Hansen et al.: Nuance Is Crucial in Comparisons of Noise. Cell Systems. 7: 352-355. PMID 30359620 DOI: 10.1016/J.Cels.2018.10.003  0.32
2017 Jonsson VD, Blakely CM, Lin L, Asthana S, Matni N, Olivas V, Pazarentzos E, Gubens MA, Bastian BC, Taylor BS, Doyle JC, Bivona TG. Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution. Scientific Reports. 7: 44206. PMID 28287179 DOI: 10.1038/Srep44206  0.48
2017 Das A, Sampson AL, Lainscsek C, Muller L, Lin W, Doyle JC, Cash SS, Halgren E, Sejnowski TJ. Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings. Neural Computation. 1-40. PMID 28095202 DOI: 10.1162/Neco_A_00936  0.32
2016 Nair J, Andreasson M, Andrew LLH, Low SH, Doyle JC. On Channel Failures, File Fragmentation Policies, and Heavy-Tailed Completion Times Ieee/Acm Transactions On Networking. 24: 529-541. DOI: 10.1109/Tnet.2014.2375920  0.76
2016 Doyle JC. Even noisy responses can be perfect if integrated properly Cell Systems. 2: 73-75. DOI: 10.1016/j.cels.2016.02.012  1
2015 Lamperski A, Doyle JC. The H2 Control Problem for Quadratically Invariant SystemsWith Delays Ieee Transactions On Automatic Control. 60: 1945-1950. DOI: 10.1109/Tac.2014.2363917  1
2015 Kozyryev I, Baum L, Matsuda K, Olson P, Hemmerling B, Doyle JM. Collisional relaxation of vibrational states of SrOH with He at 2 K New Journal of Physics. 17: 1-8. DOI: 10.1088/1367-2630/17/4/045003  0.01
2015 Li L, Alderson D, Doyle JC, Willinger W. Towards a theory of scale-free graphs: Definition, properties, and implications Internet Mathematics. 2: 431-523. DOI: 10.1080/15427951.2005.10129111  1
2014 Li N, Cruz J, Chien CS, Sojoudi S, Recht B, Stone D, Csete M, Bahmiller D, Doyle JC. Robust efficiency and actuator saturation explain healthy heart rate control and variability. Proceedings of the National Academy of Sciences of the United States of America. 111: E3476-85. PMID 25092335 DOI: 10.1073/Pnas.1401883111  1
2014 Chen L, Cui T, Low SH, Doyle JC. A game-Theoretic model for medium access control Wicon 2007 - 3rd International Icst Conference On Wireless Internet. DOI: 10.4108/wicon.2007.2281  1
2014 Matni N, Lamperski AG, Doyle JC. Optimal two player LQR state feedback with varying delay Ifac Proceedings Volumes. 47: 2854-2859. DOI: 10.3182/20140824-6-Za-1003.01517  0.48
2014 Sojoudi S, Low SH, Doyle JC. Buffering dynamics and stability of internet congestion controllers Ieee/Acm Transactions On Networking. 22: 1808-1818. DOI: 10.1109/Tnet.2013.2287198  1
2014 Matni N, Leong YP, Wang YS, You S, Horowitz MB, Doyle JC. Resilience in large scale distributed systems Procedia Computer Science. 28: 285-293. DOI: 10.1016/J.Procs.2014.03.036  0.48
2013 Scheff JD, Mavroudis PD, Foteinou PT, An G, Calvano SE, Doyle J, Dick TE, Lowry SF, Vodovotz Y, Androulakis IP. A multiscale modeling approach to inflammation: A case study in human endotoxemia Journal of Computational Physics. 244: 279-289. DOI: 10.1016/J.Jcp.2012.09.024  1
2012 Dick TE, Molkov YI, Nieman G, Hsieh YH, Jacono FJ, Doyle J, Scheff JD, Calvano SE, Androulakis IP, An G, Vodovotz Y. Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling. Frontiers in Physiology. 3: 222. PMID 22783197 DOI: 10.3389/Fphys.2012.00222  1
2012 Chen L, Ho T, Chiang M, Low SH, Doyle JC. Congestion control for multicast flows with network coding Ieee Transactions On Information Theory. 58: 5908-5921. DOI: 10.1109/Tit.2012.2204170  1
2011 Chandra FA, Buzi G, Doyle JC. Glycolytic oscillations and limits on robust efficiency. Science (New York, N.Y.). 333: 187-92. PMID 21737735 DOI: 10.1126/Science.1200705  1
2011 Lavaei J, Babakhani A, Hajimiri A, Doyle JC. Solving large-scale hybrid circuit-antenna problems Ieee Transactions On Circuits and Systems I: Regular Papers. 58: 374-387. DOI: 10.1109/Tcsi.2010.2072010  1
2011 Gayme DF, McKeon BJ, Bamieh B, Papachristodoulou A, Doyle JC. Amplification and nonlinear mechanisms in plane Couette flow Physics of Fluids. 23. DOI: 10.1063/1.3599701  1
2011 Page MT, Alderson D, Doyle J. The magnitude distribution of earthquakes near Southern California faults Journal of Geophysical Research: Solid Earth. 116. DOI: 10.1029/2010Jb007933  1
2011 Chen L, Low SH, Doyle JC. Cross-layer design in multihop wireless networks Computer Networks. 55: 480-496. DOI: 10.1016/J.Comnet.2010.09.005  1
2010 Chen L, Low SH, Doyle JC. Random access game and medium access control design Ieee/Acm Transactions On Networking. 18: 1303-1316. DOI: 10.1109/Tnet.2010.2041066  1
2010 Babakhani A, Lavaei J, Doyle JC, Hajimiri A. Finding globally optimum solutions in antenna optimization problems 2010 Ieee International Symposium On Antennas and Propagation and Cnc-Usnc/Ursi Radio Science Meeting - Leading the Wave, Ap-S/Ursi 2010. DOI: 10.1109/APS.2010.5561993  1
2010 Tsikata E, Campbell WC, Hummon MT, Lu HI, Doyle JM. Magnetic trapping of NH molecules with 20 s lifetimes New Journal of Physics. 12. DOI: 10.1088/1367-2630/12/6/065028  0.12
2010 Gayme DF, McKeon BJ, Papachristodoulou A, Bamieh B, Doyle JC. A streamwise constant model of turbulence in plane Couette flow Journal of Fluid Mechanics. 665: 99-119. DOI: 10.1017/S0022112010003861  1
2010 Lavaei J, Babakhani A, Hajimiri A, Doyle JC. A study of near-field direct antenna modulation systems using convex optimization Proceedings of the 2010 American Control Conference, Acc 2010. 1065-1072.  1
2009 Bowman DM, Balch JK, Artaxo P, Bond WJ, Carlson JM, Cochrane MA, D'Antonio CM, Defries RS, Doyle JC, Harrison SP, Johnston FH, Keeley JE, Krawchuk MA, Kull CA, Marston JB, et al. Fire in the Earth system. Science (New York, N.Y.). 324: 481-4. PMID 19390038 DOI: 10.1126/Science.1163886  1
2009 Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, et al. A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. Plos Computational Biology. 5: e1000334. PMID 19325892 DOI: 10.1371/Journal.Pcbi.1000334  1
2006 Kurata H, El-Samad H, Iwasaki R, Ohtake H, Doyle JC, Grigorova I, Gross CA, Khammash M. Module-based analysis of robustness tradeoffs in the heat shock response system. Plos Computational Biology. 2: e59. PMID 16863396 DOI: 10.1371/Journal.Pcbi.0020059  1
2005 Brookings T, Carlson JM, Doyle J. Three mechanisms for power laws on the Cayley tree. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 056120. PMID 16383701 DOI: 10.1103/Physreve.72.056120  1
2005 Moritz MA, Morais ME, Summerell LA, Carlson JM, Doyle J. Wildfires, complexity, and highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America. 102: 17912-17917. PMID 16332964 DOI: 10.1073/Pnas.0508985102  1
2005 Doyle JC, Alderson DL, Li L, Low S, Roughan M, Shalunov S, Tanaka R, Willinger W. The "robust yet fragile" nature of the Internet. Proceedings of the National Academy of Sciences of the United States of America. 102: 14497-502. PMID 16204384 DOI: 10.1073/Pnas.0501426102  0.76
2005 Tanaka R, Yi TM, Doyle J. Some protein interaction data do not exhibit power law statistics. Febs Letters. 579: 5140-4. PMID 16143331 DOI: 10.1016/J.Febslet.2005.08.024  0.32
2005 Manning M, Carlson JM, Doyle J. Highly optimized tolerance and power laws in dense and sparse resource regimes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 016108. PMID 16090037 DOI: 10.1103/Physreve.72.016108  0.32
2005 Zhou T, Carlson JM, Doyle J. Evolutionary dynamics and highly optimized tolerance Journal of Theoretical Biology. 236: 438-447. PMID 15904934 DOI: 10.1016/J.Jtbi.2005.03.023  1
2005 El-Samad H, Kurata H, Doyle JC, Gross CA, Khammash M. Surviving heat shock: control strategies for robustness and performance. Proceedings of the National Academy of Sciences of the United States of America. 102: 2736-41. PMID 15668395 DOI: 10.1073/Pnas.0403510102  1
2005 Alderson D, Li L, Willinger W, Doyle JC. Understanding internet topology: principles, models, and validation Ieee Acm Transactions On Networking. 13: 1205-1218. DOI: 10.1109/Tnet.2005.861250  0.76
2005 Wang J, Li L, Low SH, Doyle JC. Cross-layer optimization in TCP/IP networks Ieee Acm Transactions On Networking. 13: 582-595. DOI: 10.1109/Tnet.2005.850219  0.76
2005 Paganini F, Wang Z, Doyle JC, Low SH. Congestion control for high performance, stability, and fairness in general networks Ieee/Acm Transactions On Networking. 13: 43-56. DOI: 10.1109/Tnet.2004.842216  1
2005 Nguyen SV, Helton JS, Maussang K, Ketterle W, Doyle JM. Magnetic trapping of an atomic Mn55 - Cr52 mixture Physical Review a - Atomic, Molecular, and Optical Physics. 71. DOI: 10.1103/Physreva.71.025602  0.12
2004 Shapiro BE, Hucka M, Finney A, Doyle J. MathSBML: a package for manipulating SBML-based biological models. Bioinformatics (Oxford, England). 20: 2829-31. PMID 15087311 DOI: 10.1093/Bioinformatics/Bth271  1
2003 Sauro HM, Hucka M, Finney A, Wellock C, Bolouri H, Doyle J, Kitano H. Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. Omics : a Journal of Integrative Biology. 7: 355-72. PMID 14683609 DOI: 10.1089/153623103322637670  1
2003 Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (Oxford, England). 19: 524-31. PMID 12611808 DOI: 10.1093/Bioinformatics/Btg015  1
2003 Low SH, Paganini F, Wang J, Doyle JC. Linear stability of TCP/RED and a scalable control Computer Networks. 43: 633-647. DOI: 10.1016/S1389-1286(03)00304-9  1
2003 Paganini F, Doyle J, Low SH. A Control Theoretical Look at Internet Congestion Control Lecture Notes in Control and Information Sciences. 17-31. DOI: 10.1007/3-540-36589-3_2  0.76
2002 Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, ... ... Doyle J, et al. Overview of the Alliance for Cellular Signaling. Nature. 420: 703-6. PMID 12478301 DOI: 10.1038/Nature01304  0.32
2002 Reynolds D, Carlson JM, Doyle J. Design degrees of freedom and mechanisms for complexity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 016108. PMID 12241427 DOI: 10.1103/Physreve.66.016108  0.32
2002 Carlson JM, Doyle J. Complexity and robustness Proceedings of the National Academy of Sciences of the United States of America. 99: 2538-2545. PMID 11875207 DOI: 10.1073/Pnas.012582499  1
2002 Csete ME, Doyle JC. Reverse engineering of biological complexity. Science (New York, N.Y.). 295: 1664-9. PMID 11872830 DOI: 10.1126/Science.1069981  1
2002 Zhou T, Carlson JM, Doyle J. Mutation, specialization, and hypersensitivity in highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America. 99: 2049-2054. PMID 11842230 DOI: 10.1073/Pnas.261714399  1
2002 Low SH, Paganini F, Doyle JC. Internet congestion control Ieee Control Systems Magazine. 22: 28-43. DOI: 10.1109/37.980245  1
2002 Barahona M, Doherty AC, Sznaier M, Mabuchi H, Doyle JC. Finite horizon model reduction and the appearance of dissipation in Hamiltonian systems Proceedings of the Ieee Conference On Decision and Control. 4: 4563-4568.  1
2001 Csete M, Walikonis J, Slawny N, Wei Y, Korsnes S, Doyle JC, Wold B. Oxygen-mediated regulation of skeletal muscle satellite cell proliferation and adipogenesis in culture Journal of Cellular Physiology. 189: 189-196. PMID 11598904 DOI: 10.1002/Jcp.10016  1
2001 Doyle J. Beyond the spherical cow Nature. 411: 151-152. PMID 11346778 DOI: 10.1038/35075703  1
2001 Robert C, Carlson JM, Doyle J. Highly optimized tolerance in epidemic models incorporating local optimization and regrowth Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 63: 561221-5612213. DOI: 10.1103/Physreve.63.056122  1
2000 Yi TM, Huang Y, Simon MI, Doyle J. Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proceedings of the National Academy of Sciences of the United States of America. 97: 4649-53. PMID 10781070 DOI: 10.1073/Pnas.97.9.4649  0.32
2000 Doyle J, Carlson JM. Power laws, highly optimized tolerance, and generalized source coding Physical Review Letters. 84: 5656-5659. DOI: 10.1103/Physrevlett.84.5656  1
1999 Carlson JM, Doyle J. Highly optimized tolerance: A mechanism for power laws in designed systems Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 1412-1427. DOI: 10.1103/Physreve.60.1412  1
1997 Lu W, Doyle JC. Robustness analysis and synthesis for nonlinear uncertain systems Ieee Transactions On Automatic Control. 42: 1654-1662. DOI: 10.1109/9.650015  1
1995 Lu W, Doyle JC. /spl Hscr//sub /spl infin// control of nonlinear systems: a convex characterization Ieee Transactions On Automatic Control. 40: 1668-1675. DOI: 10.1109/9.412643  1
1994 Lu W, Doyle JC. /spl Hscr//sub /spl infin// control of nonlinear systems via output feedback: controller parameterization Ieee Transactions On Automatic Control. 39: 2517-2521. DOI: 10.1109/9.362834  1
1994 Doyle J, Zhou K, Glover K, Bodenheimer B. Mixed H <inf>2</inf> and H_{\\\\\\\\infty}, Performance Objectives II: Optimal Control Ieee Transactions On Automatic Control. 39: 1575-1587. DOI: 10.1109/9.310031  1
1994 Zhou K, Glover K, Bodenheimer B, Doyle J. Mixed H<inf>2</inf> and H<inf>∞</inf> Performance Objectives I: Robust Performance Analysis Ieee Transactions On Automatic Control. 39: 1564-1574. DOI: 10.1109/9.310030  1
1994 Balas GJ, Doyle JC. Robustness and Performance Trade-Offs in Control Design for Flexible Structures Ieee Transactions On Control Systems Technology. 2: 352-361. DOI: 10.1109/87.338656  1
1991 Fan MKH, Tits AL, Doyle JC. Robustness in the Presence of Mixed Parametric Uncertainty and Unmodeled Dynamics Ieee Transactions On Automatic Control. 36: 25-38. DOI: 10.1109/9.62265  1
1990 Balas GJ, Doyle JC. Identification of Flexible Structures for Robust Control Ieee Control Systems Magazine. 10: 51-58. DOI: 10.1109/37.56278  1
1989 Doyle JC, Glover K, Khargonekar PP, Francis BA. State-Space Solutions to Standard H2and H∞, Control Problems Ieee Transactions On Automatic Control. 34: 831-847. DOI: 10.1109/9.29425  1
1988 Lenz KE, Khargonekar PP, Doyle JC. When is a controller H-optimal? Mathematics of Control, Signals, and Systems. 1: 107-122. DOI: 10.1007/Bf02551404  1
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