| Year |
Citation |
Score |
| 2024 |
Rumker L, Sakaue S, Reshef Y, Kang JB, Yazar S, Alquicira-Hernandez J, Valencia C, Lagattuta KA, Mah-Som A, Nathan A, Powell JE, Loh PR, Raychaudhuri S. Identifying genetic variants that influence the abundance of cell states in single-cell data. Nature Genetics. PMID 39327486 DOI: 10.1038/s41588-024-01909-1 |
0.361 |
|
| 2024 |
Krishna C, Chiou J, Sakaue S, Kang JB, Christensen SM, Lee I, Aksit MA, Kim HI, von Schack D, Raychaudhuri S, Ziemek D, Hu X. The influence of HLA genetic variation on plasma protein expression. Nature Communications. 15: 6469. PMID 39085222 DOI: 10.1038/s41467-024-50583-8 |
0.611 |
|
| 2024 |
Nieto-Caballero VE, Reijneveld JF, Ruvalcaba A, Innocenzi G, Abeydeera N, Asgari S, Lopez K, Iwany SK, Luo Y, Nathan A, Fernandez-Salinas D, Chiñas M, Huang CC, Zhang Z, León SR, ... ... Raychaudhuri S, et al. History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. Plos Genetics. 20: e1011313. PMID 38870230 DOI: 10.1371/journal.pgen.1011313 |
0.443 |
|
| 2024 |
Dunlap G, Wagner A, Meednu N, Wang R, Zhang F, Ekabe JC, Jonsson AH, Wei K, Sakaue S, Nathan A, Bykerk VP, Donlin LT, Goodman SM, Firestein GS, Boyle DL, ... ... Raychaudhuri S, et al. Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature Communications. 15: 4991. PMID 38862501 DOI: 10.1038/s41467-024-49186-0 |
0.395 |
|
| 2024 |
Donado CA, Jonsson AH, Theisen E, Zhang F, Nathan A, Rupani KV, Jones D, Raychaudhuri S, Dwyer DF, Brenner MB. Granzyme K drives a newly-intentified pathway of complement activation. Biorxiv : the Preprint Server For Biology. PMID 38826230 DOI: 10.1101/2024.05.22.595315 |
0.326 |
|
| 2024 |
Weinand K, Sakaue S, Nathan A, Jonsson AH, Zhang F, Watts GFM, Al Suqri M, Zhu Z, Rao DA, Anolik JH, Brenner MB, Donlin LT, Wei K, Raychaudhuri S. The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature Communications. 15: 4650. PMID 38821936 DOI: 10.1038/s41467-024-48620-7 |
0.4 |
|
| 2024 |
Sakaue S, Weinand K, Isaac S, Dey KK, Jagadeesh K, Kanai M, Watts GFM, Zhu Z, Brenner MB, McDavid A, Donlin LT, Wei K, Price AL, Raychaudhuri S. Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature Genetics. PMID 38594305 DOI: 10.1038/s41588-024-01682-1 |
0.314 |
|
| 2024 |
Kronzer VL, Sparks JA, Raychaudhuri S, Cerhan JR. Low-frequency and rare genetic variants associated with rheumatoid arthritis risk. Nature Reviews. Rheumatology. PMID 38538758 DOI: 10.1038/s41584-024-01096-7 |
0.331 |
|
| 2024 |
Kim T, Martínez-Bonet M, Wang Q, Hackert N, Sparks JA, Baglaenko Y, Koh B, Darbousset R, Laza-Briviesca R, Chen X, Aguiar VRC, Chiu DJ, Westra HJ, Gutierrez-Arcelus M, Weirauch MT, ... Raychaudhuri S, et al. Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature Communications. 15: 2150. PMID 38459032 DOI: 10.1038/s41467-024-46457-8 |
0.682 |
|
| 2024 |
Lagattuta KA, Park HL, Rumker L, Ishigaki K, Nathan A, Raychaudhuri S. The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature Communications. 15: 1204. PMID 38331990 DOI: 10.1038/s41467-024-45170-w |
0.356 |
|
| 2024 |
Tegtmeyer M, Arora J, Asgari S, Cimini BA, Nadig A, Peirent E, Liyanage D, Way GP, Weisbart E, Nathan A, Amariuta T, Eggan K, Haghighi M, McCarroll SA, O'Connor L, ... ... Raychaudhuri S, et al. High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature Communications. 15: 347. PMID 38184653 DOI: 10.1038/s41467-023-44045-w |
0.776 |
|
| 2024 |
Liu Z, Luo Y, Kirimunda S, Verboom M, Onabajo OO, Gouveia MH, Ogwang MD, Kerchan P, Reynolds SJ, Tenge CN, Were PA, Kuremu RT, Wekesa WN, Masalu N, Kawira E, ... ... Raychaudhuri S, et al. Human leukocyte antigen-DQA1*04:01 and rs2040406 variants are associated with elevated risk of childhood Burkitt lymphoma. Communications Biology. 7: 41. PMID 38182727 DOI: 10.1038/s42003-023-05701-5 |
0.418 |
|
| 2023 |
Kang JB, Shen AZ, Gurajala S, Nathan A, Rumker L, Aguiar VRC, Valencia C, Lagattuta KA, Zhang F, Jonsson AH, Yazar S, Alquicira-Hernandez J, Khalili H, Ananthakrishnan AN, Jagadeesh K, ... ... Raychaudhuri S, et al. Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. Nature Genetics. PMID 38036787 DOI: 10.1038/s41588-023-01586-6 |
0.64 |
|
| 2023 |
Gupta A, Weinand K, Nathan A, Sakaue S, Zhang MJ, Donlin L, Wei K, Price AL, Amariuta T, Raychaudhuri S. Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability. Nature Genetics. PMID 38036783 DOI: 10.1038/s41588-023-01577-7 |
0.77 |
|
| 2023 |
Wang Q, Martínez-Bonet M, Kim T, Sparks JA, Ishigaki K, Chen X, Sudman M, Aguiar V, Sim S, Hernandez MC, Chiu DJ, Wactor A, Wauford B, Marion MC, Gutierrez-Arcelus M, ... ... Raychaudhuri S, et al. Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant. Cell Genomics. 3: 100420. PMID 38020975 DOI: 10.1016/j.xgen.2023.100420 |
0.329 |
|
| 2023 |
Rumker L, Sakaue S, Reshef Y, Kang JB, Yazar S, Alquicira-Hernandez J, Valencia C, Lagattuta KA, Mah-Som A, Nathan A, Powell JE, Loh PR, Raychaudhuri S. Identifying genetic variants that influence the abundance of cell states in single-cell data. Biorxiv : the Preprint Server For Biology. PMID 38014313 DOI: 10.1101/2023.11.13.566919 |
0.374 |
|
| 2023 |
Zhang F, Jonsson AH, Nathan A, Millard N, Curtis M, Xiao Q, Gutierrez-Arcelus M, Apruzzese W, Watts GFM, Weisenfeld D, Nayar S, Rangel-Moreno J, Meednu N, Marks KE, Mantel I, ... ... Raychaudhuri S, et al. Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes. Nature. PMID 37938773 DOI: 10.1038/s41586-023-06708-y |
0.749 |
|
| 2023 |
Weisenfeld D, Zhang F, Donlin L, Jonsson AH, Apruzzese W, Campbell D, Rao DA, Wei K, Holers VM, Gravallese E, Moreland L, Goodman S, Brenner M, Raychaudhuri S, Filer A, et al. Associations between rheumatoid arthritis clinical factors with synovial cell types and states. Arthritis & Rheumatology (Hoboken, N.J.). PMID 37791989 DOI: 10.1002/art.42726 |
0.348 |
|
| 2023 |
Sakaue S, Gurajala S, Curtis M, Luo Y, Choi W, Ishigaki K, Kang JB, Rumker L, Deutsch AJ, Schönherr S, Forer L, LeFaive J, Fuchsberger C, Han B, Lenz TL, ... ... Raychaudhuri S, et al. Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease. Nature Protocols. PMID 37495751 DOI: 10.1038/s41596-023-00853-4 |
0.745 |
|
| 2023 |
Inamo J, Keegan J, Griffith A, Ghosh T, Horisberger A, Howard K, Pulford J, Murzin E, Hancock B, Jonsson AH, Seifert J, Feser ML, Norris JM, Cao Y, Apruzzese W, ... ... Raychaudhuri S, et al. Deep immunophenotyping reveals circulating activated lymphocytes in individuals at risk for rheumatoid arthritis. Biorxiv : the Preprint Server For Biology. PMID 37461737 DOI: 10.1101/2023.07.03.547507 |
0.418 |
|
| 2023 |
Suliman S, Nieto-Caballero VE, Asgari S, Lopez K, Iwany SK, Luo Y, Nathan A, Fernandez-Salinas D, Chiñas M, Huang CC, Zhang Z, León SR, Calderon RI, Lecca L, Murray M, ... ... Raychaudhuri S, et al. History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. Medrxiv : the Preprint Server For Health Sciences. PMID 37425785 DOI: 10.1101/2023.06.20.23291558 |
0.451 |
|
| 2023 |
Mulhearn B, Marshall L, Sutcliffe M, Hannes SK, Fonseka C, Hussell T, Raychaudhuri S, Barton A, Viatte S. Automated clustering reveals CD4 T cell subset imbalances in rheumatoid arthritis. Frontiers in Immunology. 14: 1094872. PMID 37215131 DOI: 10.3389/fimmu.2023.1094872 |
0.805 |
|
| 2023 |
Kang JB, Raveane A, Nathan A, Soranzo N, Raychaudhuri S. Methods and Insights from Single-Cell Expression Quantitative Trait Loci. Annual Review of Genomics and Human Genetics. PMID 37196361 DOI: 10.1146/annurev-genom-101422-100437 |
0.315 |
|
| 2023 |
Zhang HG, McDermott G, Seyok T, Huang S, Dahal K, L'Yi S, Lea-Bonzel C, Stratton J, Weisenfeld D, Monach P, Raychaudhuri S, Yu KH, Cai T, Cui J, Hong C, et al. Identifying shared genetic architecture between rheumatoid arthritis and other conditions: a phenome-wide association study with genetic risk scores. Ebiomedicine. 92: 104581. PMID 37121095 DOI: 10.1016/j.ebiom.2023.104581 |
0.305 |
|
| 2023 |
Barry A, McNulty MT, Jia X, Gupta Y, Debiec H, Luo Y, Nagano C, Horinouchi T, Jung S, Colucci M, Ahram DF, Mitrotti A, Sinha A, Teeninga N, Jin G, ... ... Raychaudhuri S, et al. Multi-population genome-wide association study implicates immune and non-immune factors in pediatric steroid-sensitive nephrotic syndrome. Nature Communications. 14: 2481. PMID 37120605 DOI: 10.1038/s41467-023-37985-w |
0.499 |
|
| 2023 |
Cuomo ASE, Nathan A, Raychaudhuri S, MacArthur DG, Powell JE. Single-cell genomics meets human genetics. Nature Reviews. Genetics. PMID 37085594 DOI: 10.1038/s41576-023-00599-5 |
0.313 |
|
| 2023 |
Weinand K, Sakaue S, Nathan A, Jonsson AH, Zhang F, Watts GFM, Zhu Z, Rao DA, Anolik JH, Brenner MB, Donlin LT, Wei K, Raychaudhuri S. The Chromatin Landscape of Pathogenic Transcriptional Cell States in Rheumatoid Arthritis. Biorxiv : the Preprint Server For Biology. PMID 37066336 DOI: 10.1101/2023.04.07.536026 |
0.393 |
|
| 2023 |
Dunlap G, Wagner A, Meednu N, Zhang F, Jonsson AH, Wei K, Sakaue S, Nathan A, Bykerk VP, Donlin LT, Goodman SM, Firestein GS, Boyle DL, Holers VM, Moreland LW, ... ... Raychaudhuri S, et al. Clonal associations of lymphocyte subsets and functional states revealed by single cell antigen receptor profiling of T and B cells in rheumatoid arthritis synovium. Biorxiv : the Preprint Server For Biology. PMID 36993527 DOI: 10.1101/2023.03.18.533282 |
0.383 |
|
| 2023 |
Kang JB, Shen AZ, Sakaue S, Luo Y, Gurajala S, Nathan A, Rumker L, Aguiar VRC, Valencia C, Lagattuta K, Zhang F, Jonsson AH, Yazar S, Alquicira-Hernandez J, Khalili H, ... ... Raychaudhuri S, et al. Mapping the dynamic genetic regulatory architecture of genes at single-cell resolution. Medrxiv : the Preprint Server For Health Sciences. PMID 36993194 DOI: 10.1101/2023.03.14.23287257 |
0.635 |
|
| 2022 |
Ishigaki K, Sakaue S, Terao C, Luo Y, Sonehara K, Yamaguchi K, Amariuta T, Too CL, Laufer VA, Scott IC, Viatte S, Takahashi M, Ohmura K, Murasawa A, Hashimoto M, ... ... Raychaudhuri S, et al. Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis. Nature Genetics. PMID 36333501 DOI: 10.1038/s41588-022-01213-w |
0.799 |
|
| 2022 |
Zhang MJ, Hou K, Dey KK, Sakaue S, Jagadeesh KA, Weinand K, Taychameekiatchai A, Rao P, Pisco AO, Zou J, Wang B, Gandal M, Raychaudhuri S, Pasaniuc B, Price AL. Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data. Nature Genetics. PMID 36050550 DOI: 10.1038/s41588-022-01167-z |
0.353 |
|
| 2022 |
Gupta A, Martin-Rufino JD, Jones TR, Subramanian V, Qiu X, Grody EI, Bloemendal A, Weng C, Niu SY, Min KH, Mehta A, Zhang K, Siraj L, Al' Khafaji A, Sankaran VG, ... Raychaudhuri S, et al. Inferring gene regulation from stochastic transcriptional variation across single cells at steady state. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207392119. PMID 35969771 DOI: 10.1073/pnas.2207392119 |
0.433 |
|
| 2022 |
Asgari S, Luo Y, Huang CC, Zhang Z, Calderon R, Jimenez J, Yataco R, Contreras C, Galea JT, Lecca L, Jones D, Moody DB, Murray MB, Raychaudhuri S. Higher native Peruvian genetic ancestry proportion is associated with tuberculosis progression risk. Cell Genomics. 2. PMID 35873671 DOI: 10.1016/j.xgen.2022.100151 |
0.4 |
|
| 2022 |
Degenhardt F, Ellinghaus D, Juzenas S, Lerga-Jaso J, Wendorff M, Maya-Miles D, Uellendahl-Werth F, ElAbd H, Rühlemann MC, Arora J, Özer O, Lenning OB, Myhre R, Vadla MS, Wacker EM, ... ... Raychaudhuri S, et al. Detailed stratified GWAS analysis for severe COVID-19 in four European populations. Human Molecular Genetics. PMID 35848942 DOI: 10.1093/hmg/ddac158 |
0.309 |
|
| 2022 |
Jonsson AH, Zhang F, Dunlap G, Gomez-Rivas E, Watts GFM, Faust HJ, Rupani KV, Mears JR, Meednu N, Wang R, Keras G, Coblyn JS, Massarotti EM, Todd DJ, Anolik JH, ... ... Raychaudhuri S, et al. Granzyme K CD8 T cells form a core population in inflamed human tissue. Science Translational Medicine. 14: eabo0686. PMID 35704599 DOI: 10.1126/scitranslmed.abo0686 |
0.341 |
|
| 2022 |
Nathan A, Asgari S, Ishigaki K, Valencia C, Amariuta T, Luo Y, Beynor JI, Baglaenko Y, Suliman S, Price AL, Lecca L, Murray MB, Moody DB, Raychaudhuri S. Single-cell eQTL models reveal dynamic T cell state dependence of disease loci. Nature. PMID 35545678 DOI: 10.1038/s41586-022-04713-1 |
0.791 |
|
| 2022 |
Ishigaki K, Lagattuta KA, Luo Y, James EA, Buckner JH, Raychaudhuri S. HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors. Nature Genetics. PMID 35332318 DOI: 10.1038/s41588-022-01032-z |
0.468 |
|
| 2021 |
Millard N, Korsunsky I, Weinand K, Fonseka CY, Nathan A, Kang JB, Raychaudhuri S. Maximizing statistical power to detect differentially abundant cell states with scPOST. Cell Reports Methods. 1. PMID 35005693 DOI: 10.1016/j.crmeth.2021.100120 |
0.773 |
|
| 2021 |
Luo Y, Kanai M, Choi W, Li X, Sakaue S, Yamamoto K, Ogawa K, Gutierrez-Arcelus M, Gregersen PK, Stuart PE, Elder JT, Forer L, Schönherr S, Fuchsberger C, Smith AV, ... ... Raychaudhuri S, et al. Author Correction: A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nature Genetics. PMID 34728834 DOI: 10.1038/s41588-021-00979-9 |
0.325 |
|
| 2021 |
Kang JB, Nathan A, Weinand K, Zhang F, Millard N, Rumker L, Moody DB, Korsunsky I, Raychaudhuri S. Efficient and precise single-cell reference atlas mapping with Symphony. Nature Communications. 12: 5890. PMID 34620862 DOI: 10.1038/s41467-021-25957-x |
0.31 |
|
| 2021 |
Luo Y, Kanai M, Choi W, Li X, Sakaue S, Yamamoto K, Ogawa K, Gutierrez-Arcelus M, Gregersen PK, Stuart PE, Elder JT, Forer L, Schönherr S, Fuchsberger C, Smith AV, ... ... Raychaudhuri S, et al. A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nature Genetics. 53: 1504-1516. PMID 34611364 DOI: 10.1038/s41588-021-00935-7 |
0.395 |
|
| 2021 |
Gamache I, Legault MA, Grenier JC, Sanchez R, Rhéaume E, Asgari S, Barhdadi A, Zada YF, Trochet H, Luo Y, Lecca L, Murray M, Raychaudhuri S, Tardif JC, Dubé MP, et al. A sex-specific evolutionary interaction between and . Elife. 10. PMID 34609279 DOI: 10.7554/eLife.69198 |
0.417 |
|
| 2021 |
Mysore V, Cullere X, Mears J, Rosetti F, Okubo K, Liew PX, Zhang F, Madera-Salcedo I, Rosenbauer F, Stone RM, Aster JC, von Andrian UH, Lichtman AH, Raychaudhuri S, Mayadas TN. FcγR engagement reprograms neutrophils into antigen cross-presenting cells that elicit acquired anti-tumor immunity. Nature Communications. 12: 4791. PMID 34373452 DOI: 10.1038/s41467-021-24591-x |
0.317 |
|
| 2021 |
Baglaenko Y, Macfarlane D, Marson A, Nigrovic PA, Raychaudhuri S. Genome editing to define the function of risk loci and variants in rheumatic disease. Nature Reviews. Rheumatology. PMID 34188205 DOI: 10.1038/s41584-021-00637-8 |
0.362 |
|
| 2021 |
Nathan A, Beynor JI, Baglaenko Y, Suliman S, Ishigaki K, Asgari S, Huang CC, Luo Y, Zhang Z, Lopez K, Lindestam Arlehamn CS, Ernst JD, Jimenez J, Calderón RI, Lecca L, ... ... Raychaudhuri S, et al. Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease. Nature Immunology. PMID 34031617 DOI: 10.1038/s41590-021-00933-1 |
0.44 |
|
| 2021 |
Luo Y, Li X, Wang X, Gazal S, Mercader JM, Neale BM, Florez JC, Auton A, Price AL, Finucane HK, Raychaudhuri S. Estimating heritability and its enrichment in tissue-specific gene sets in admixed populations. Human Molecular Genetics. PMID 33987664 DOI: 10.1093/hmg/ddab130 |
0.381 |
|
| 2021 |
Cook S, Choi W, Lim H, Luo Y, Kim K, Jia X, Raychaudhuri S, Han B. Accurate imputation of human leukocyte antigens with CookHLA. Nature Communications. 12: 1264. PMID 33627654 DOI: 10.1038/s41467-021-21541-5 |
0.414 |
|
| 2021 |
Shi H, Gazal S, Kanai M, Koch EM, Schoech AP, Siewert KM, Kim SS, Luo Y, Amariuta T, Huang H, Okada Y, Raychaudhuri S, Sunyaev SR, Price AL. Population-specific causal disease effect sizes in functionally important regions impacted by selection. Nature Communications. 12: 1098. PMID 33597505 DOI: 10.1038/s41467-021-21286-1 |
0.77 |
|
| 2020 |
Amariuta T, Ishigaki K, Sugishita H, Ohta T, Koido M, Dey KK, Matsuda K, Murakami Y, Price AL, Kawakami E, Terao C, Raychaudhuri S. Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements. Nature Genetics. PMID 33257898 DOI: 10.1038/s41588-020-00740-8 |
0.773 |
|
| 2020 |
Cui J, Raychaudhuri S, Karlson EW, Speyer C, Malspeis S, Guan H, Sparks JA, Ni H, Liu X, Stevens E, Williams JN, Davenport EE, Knevel R, Costenbader KH. Interactions Between Genome-Wide Genetic Factors and Smoking Influencing Risk of Systemic Lupus Erythematosus. Arthritis & Rheumatology (Hoboken, N.J.). PMID 32969204 DOI: 10.1002/art.41414 |
0.671 |
|
| 2020 |
Krebs K, Bovijn J, Zheng N, Lepamets M, Censin JC, Jürgenson T, Särg D, Abner E, Laisk T, Luo Y, Skotte L, Geller F, Feenstra B, Wang W, Auton A, ... ... Raychaudhuri S, et al. Genome-wide Study Identifies Association between HLA-B55:01 and Self-Reported Penicillin Allergy. American Journal of Human Genetics. PMID 32888428 DOI: 10.1016/J.Ajhg.2020.08.008 |
0.549 |
|
| 2020 |
Zhang F, Mears JR, Shakib L, Beynor JI, Shanaj S, Korsunsky I, Nathan A, Donlin LT, Raychaudhuri S. IFN- and TNF- drive a + + macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation. Biorxiv : the Preprint Server For Biology. PMID 32793902 DOI: 10.1101/2020.08.05.238360 |
0.335 |
|
| 2020 |
Choi W, Luo Y, Raychaudhuri S, Han B. HATK: HLA Analysis Toolkit. Bioinformatics (Oxford, England). PMID 32735319 DOI: 10.1093/Bioinformatics/Btaa684 |
0.481 |
|
| 2020 |
Orange DE, Yao V, Sawicka K, Fak J, Frank MO, Parveen S, Blachere NE, Hale C, Zhang F, Raychaudhuri S, Troyanskaya OG, Darnell RB. RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares. The New England Journal of Medicine. 383: 218-228. PMID 32668112 DOI: 10.1056/Nejmoa2004114 |
0.626 |
|
| 2020 |
Svensson MND, Zoccheddu M, Yang S, Nygaard G, Secchi C, Doody KM, Slowikowski K, Mizoguchi F, Humby F, Hands R, Santelli E, Sacchetti C, Wakabayashi K, Wu DJ, Barback C, ... ... Raychaudhuri S, et al. Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal. Science Advances. 6: eaba4353. PMID 32637608 DOI: 10.1126/Sciadv.Aba4353 |
0.714 |
|
| 2020 |
Ishigaki K, Akiyama M, Kanai M, Takahashi A, Kawakami E, Sugishita H, Sakaue S, Matoba N, Low SK, Okada Y, Terao C, Amariuta T, Gazal S, Kochi Y, Horikoshi M, ... ... Raychaudhuri S, et al. Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases. Nature Genetics. PMID 32514122 DOI: 10.1038/S41588-020-0640-3 |
0.779 |
|
| 2020 |
Asgari S, Luo Y, Akbari A, Belbin GM, Li X, Harris DN, Selig M, Bartell E, Calderon R, Slowikowski K, Contreras C, Yataco R, Galea JT, Jimenez J, Coit JM, ... ... Raychaudhuri S, et al. A positively selected FBN1 missense variant reduces height in Peruvian individuals. Nature. PMID 32499652 DOI: 10.1038/S41586-020-2302-0 |
0.74 |
|
| 2020 |
Wei K, Korsunsky I, Marshall JL, Gao A, Watts GFM, Major T, Croft AP, Watts J, Blazar PE, Lange JK, Thornhill TS, Filer A, Raza K, Donlin LT, ... ... Raychaudhuri S, et al. Notch signalling drives synovial fibroblast identity and arthritis pathology. Nature. PMID 32499639 DOI: 10.1038/S41586-020-2222-Z |
0.375 |
|
| 2020 |
Knevel R, le Cessie S, Terao CC, Slowikowski K, Cui J, Huizinga TWJ, Costenbader KH, Liao KP, Karlson EW, Raychaudhuri S. Using genetics to prioritize diagnoses for rheumatology outpatients with inflammatory arthritis. Science Translational Medicine. 12. PMID 32461333 DOI: 10.1126/Scitranslmed.Aay1548 |
0.718 |
|
| 2020 |
Fava A, Buyon JP, Mohan C, Zhang T, Belmont HM, Izmirly P, Clancy R, Monroy Trujillo J, Fine DM, Zhang Y, Magder L, Rao DA, Arazi A, Berthier CC, Davidson A, ... ... Raychaudhuri S, et al. Integrated urine proteomics and renal single-cell genomics identify an interferon-γ response gradient in lupus nephritis. Jci Insight. PMID 32396533 DOI: 10.1172/Jci.Insight.138345 |
0.394 |
|
| 2020 |
Slowikowski K, Nguyen HN, Noss EH, Simmons DP, Mizoguchi F, Watts GFM, Gurish MF, Brenner MB, Raychaudhuri S. CUX1 and IκBζ (NFKBIZ) mediate the synergistic inflammatory response to TNF and IL-17A in stromal fibroblasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 32079724 DOI: 10.1073/Pnas.1912702117 |
0.667 |
|
| 2020 |
Gutierrez-Arcelus M, Baglaenko Y, Arora J, Hannes S, Luo Y, Amariuta T, Teslovich N, Rao DA, Ermann J, Jonsson AH, Navarrete C, Rich SS, Taylor KD, Rotter JI, ... ... Raychaudhuri S, et al. Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci. Nature Genetics. PMID 32066938 DOI: 10.1038/S41588-020-0579-4 |
0.823 |
|
| 2019 |
Kim SS, Dai C, Hormozdiari F, van de Geijn B, Gazal S, Park Y, O'Connor L, Amariuta T, Loh PR, Finucane H, Raychaudhuri S, Price AL. Genes with High Network Connectivity Are Enriched for Disease Heritability. American Journal of Human Genetics. 105: 1302. PMID 31809749 DOI: 10.1016/j.ajhg.2019.11.009 |
0.717 |
|
| 2019 |
Amariuta T, Luo Y, Knevel R, Okada Y, Raychaudhuri S. Advances in genetics toward identifying pathogenic cell states of rheumatoid arthritis. Immunological Reviews. PMID 31782165 DOI: 10.1111/Imr.12827 |
0.821 |
|
| 2019 |
Korsunsky I, Millard N, Fan J, Slowikowski K, Zhang F, Wei K, Baglaenko Y, Brenner M, Loh PR, Raychaudhuri S. Fast, sensitive and accurate integration of single-cell data with Harmony. Nature Methods. PMID 31740819 DOI: 10.1038/S41592-019-0619-0 |
0.727 |
|
| 2019 |
Der E, Suryawanshi H, Morozov P, Kustagi M, Goilav B, Ranabothu S, Izmirly P, Clancy R, Belmont HM, Koenigsberg M, Mokrzycki M, Rominieki H, Graham JA, Rocca JP, Bornkamp N, ... ... Raychaudhuri S, et al. Author Correction: Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways. Nature Immunology. PMID 31605099 DOI: 10.1038/S41590-019-0529-4 |
0.7 |
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| 2019 |
Terao C, Brynedal B, Chen Z, Jiang X, Westerlind H, Hansson M, Jakobsson PJ, Lundberg K, Skriner K, Serre G, Rönnelid J, Mathsson-Alm L, Brink M, Dahlqvist SR, Padyukov L, ... ... Raychaudhuri S, et al. Distinct HLA Associations with Rheumatoid Arthritis Subsets Defined by Serological Subphenotype. American Journal of Human Genetics. PMID 31474319 DOI: 10.1016/J.Ajhg.2019.08.002 |
0.386 |
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| 2019 |
Luo Y, Suliman S, Asgari S, Amariuta T, Baglaenko Y, Martínez-Bonet M, Ishigaki K, Gutierrez-Arcelus M, Calderon R, Lecca L, León SR, Jimenez J, Yataco R, Contreras C, Galea JT, ... ... Raychaudhuri S, et al. Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians. Nature Communications. 10: 3765. PMID 31434886 DOI: 10.1038/S41467-019-11664-1 |
0.768 |
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| 2019 |
Nathan A, Baglaenko Y, Fonseka CY, Beynor JI, Raychaudhuri S. Multimodal single-cell approaches shed light on T cell heterogeneity. Current Opinion in Immunology. 61: 17-25. PMID 31430664 DOI: 10.1016/J.Coi.2019.07.002 |
0.808 |
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| 2019 |
Arazi A, Rao DA, Berthier CC, Davidson A, Liu Y, Hoover PJ, Chicoine A, Eisenhaure TM, Jonsson AH, Li S, Lieb DJ, Zhang F, Slowikowski K, Browne EP, Noma A, ... ... Raychaudhuri S, et al. Publisher Correction: The immune cell landscape in kidneys of patients with lupus nephritis. Nature Immunology. PMID 31409923 DOI: 10.1038/S41590-019-0473-3 |
0.69 |
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| 2019 |
Pouget JG, Han B, Wu Y, Mignot E, Ollila HM, Barker J, Spain S, Dand N, Trembath R, Martin J, Mayes MD, Bossini-Castillo L, López-Isac E, Jin Y, ... ... Raychaudhuri S, et al. Cross-disorder analysis of schizophrenia and 19 immune-mediated diseases identifies shared genetic risk. Human Molecular Genetics. PMID 31211845 DOI: 10.1093/Hmg/Ddz145 |
0.383 |
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| 2019 |
Arazi A, Rao DA, Berthier CC, Davidson A, Liu Y, Hoover PJ, Chicoine A, Eisenhaure TM, Jonsson AH, Li S, Lieb DJ, Zhang F, Slowikowski K, Browne EP, Noma A, ... ... Raychaudhuri S, et al. The immune cell landscape in kidneys of patients with lupus nephritis. Nature Immunology. PMID 31209404 DOI: 10.1038/S41590-019-0398-X |
0.743 |
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| 2019 |
Croft AP, Campos J, Jansen K, Turner JD, Marshall J, Attar M, Savary L, Wehmeyer C, Naylor AJ, Kemble S, Begum J, Dürholz K, Perlman H, Barone F, McGettrick HM, ... ... Raychaudhuri S, et al. Distinct fibroblast subsets drive inflammation and damage in arthritis. Nature. PMID 31142839 DOI: 10.1038/S41586-019-1263-7 |
0.341 |
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| 2019 |
Der E, Suryawanshi H, Morozov P, Kustagi M, Goilav B, Ranabathou S, Izmirly P, Clancy R, Belmont HM, Koenigsberg M, Mokrzycki M, Rominieki H, Graham JA, Rocca JP, Bornkamp N, ... ... Raychaudhuri S, et al. Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways. Nature Immunology. PMID 31110316 DOI: 10.1038/S41590-019-0386-1 |
0.71 |
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| 2019 |
Kuo D, Ding J, Cohn IS, Zhang F, Wei K, Rao DA, Rozo C, Sokhi UK, Shanaj S, Oliver DJ, Echeverria AP, DiCarlo EF, Brenner MB, Bykerk VP, Goodman SM, ... Raychaudhuri S, et al. HBEGF macrophages in rheumatoid arthritis induce fibroblast invasiveness. Science Translational Medicine. 11. PMID 31068444 DOI: 10.1126/Scitranslmed.Aau8587 |
0.424 |
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| 2019 |
Zhang F, Wei K, Slowikowski K, Fonseka CY, Rao DA, Kelly S, Goodman SM, Tabechian D, Hughes LB, Salomon-Escoto K, Watts GFM, Jonsson AH, Rangel-Moreno J, Meednu N, Rozo C, ... ... Raychaudhuri S, et al. Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry. Nature Immunology. PMID 31061532 DOI: 10.1038/S41590-019-0378-1 |
0.814 |
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| 2019 |
Fine RS, Pers TH, Amariuta T, Raychaudhuri S, Hirschhorn JN. Benchmarker: An Unbiased, Association-Data-Driven Strategy to Evaluate Gene Prioritization Algorithms. American Journal of Human Genetics. PMID 31056107 DOI: 10.1016/J.Ajhg.2019.03.027 |
0.764 |
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| 2019 |
Kim SS, Dai C, Hormozdiari F, van de Geijn B, Gazal S, Park Y, O'Connor L, Amariuta T, Loh PR, Finucane H, Raychaudhuri S, Price AL. Genes with High Network Connectivity Are Enriched for Disease Heritability. American Journal of Human Genetics. 104: 896-913. PMID 31051114 DOI: 10.1016/J.Ajhg.2019.03.020 |
0.734 |
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| 2019 |
Spiliopoulou A, Colombo M, Plant D, Nair N, Cui J, Coenen MJ, Ikari K, Yamanaka H, Saevarsdottir S, Padyukov L, Bridges SL, Kimberly RP, Okada Y, van Riel PLC, Wolbink G, ... ... Raychaudhuri S, et al. Association of response to TNF inhibitors in rheumatoid arthritis with quantitative trait loci for and CD39. Annals of the Rheumatic Diseases. PMID 31036624 DOI: 10.1136/Annrheumdis-2018-214877 |
0.41 |
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| 2019 |
Amariuta T, Luo Y, Gazal S, Davenport EE, van de Geijn B, Ishigaki K, Westra HJ, Teslovich N, Okada Y, Yamamoto K, Price AL, Raychaudhuri S. IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors. American Journal of Human Genetics. PMID 31006511 DOI: 10.1016/J.Ajhg.2019.03.012 |
0.802 |
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| 2019 |
Gutierrez-Arcelus M, Teslovich N, Mola AR, Polidoro RB, Nathan A, Kim H, Hannes S, Slowikowski K, Watts GFM, Korsunsky I, Brenner MB, Raychaudhuri S, Brennan PJ. Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions. Nature Communications. 10: 687. PMID 30737409 DOI: 10.1038/S41467-019-08604-4 |
0.797 |
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| 2019 |
Der E, Suryawanshi H, Morozov P, Kustagi M, Goilav B, Ranabothu S, Izmirly P, Clancy R, Belmont M, Koenigsberg M, Mokrzycki M, Rominiecki H, Graham J, Rocca J, Bornkamp N, ... ... Raychaudhuri S, et al. 300 Insights from single-cell RNA sequencing of skin and kidney in lupus nephritis Lupus Science & Medicine. 6. DOI: 10.1136/Lupus-2019-Lsm.300 |
0.721 |
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| 2019 |
Maurits M, Huizinga T, Raychaudhuri S, Reinders M, Karlson E, Akker Evd, Knevel R. Ab1282 A Big-Data Approach To Electronic Health Record Data – Using Dimensionality Reduction And Clustering Techniques To Study Longitudinal Relationships Between Diseases Annals of the Rheumatic Diseases. 78: 2102-2102. DOI: 10.1136/Annrheumdis-2019-Eular.5281 |
0.308 |
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| 2019 |
Márquez A, Kerick M, Zhernakova A, Gutierrez-Achury J, Chen W, Onengut-Gumuscu S, González-Álvaro I, Rodriguez-Rodriguez L, González-Gay MA, Mayes M, Raychaudhuri S, Rich SS, Wijmenga C, Ibanez JM. Op0190 Meta-Analysis Of Immunochip Data Of Four Autoimmune Diseases Reveals Novel Single-Disease And Cross-Phenotype Associations Annals of the Rheumatic Diseases. 78: 170-170. DOI: 10.1136/Annrheumdis-2019-Eular.402 |
0.604 |
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| 2019 |
Radley G, Mulhearn B, Donlin L, Anolik JH, Brenner M, Raychaudhuri S, Hyrich K, Morgan A, Wilson G, Isaacs J, Hussell T, Barton A, Viatte S. Sat0062 Stratified Medicine For Rheumatoid Arthritis: Predicting Response To Biologic Therapy Using Immune Cell Signatures Annals of the Rheumatic Diseases. DOI: 10.1136/Annrheumdis-2019-Eular.2371 |
0.332 |
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| 2018 |
Márquez A, Kerick M, Zhernakova A, Gutierrez-Achury J, Chen WM, Onengut-Gumuscu S, González-Álvaro I, Rodriguez-Rodriguez L, Rios-Fernández R, González-Gay MA, Mayes MD, ... Raychaudhuri S, et al. Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations. Genome Medicine. 10: 97. PMID 30572963 DOI: 10.1186/S13073-018-0604-8 |
0.536 |
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| 2018 |
Davenport EE, Amariuta T, Gutierrez-Arcelus M, Slowikowski K, Westra HJ, Luo Y, Shen C, Rao DA, Zhang Y, Pearson S, von Schack D, Beebe JS, Bing N, John S, Vincent MS, ... ... Raychaudhuri S, et al. Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial. Genome Biology. 19: 168. PMID 30340504 DOI: 10.1186/S13059-018-1560-8 |
0.782 |
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| 2018 |
Fonseka CY, Rao DA, Teslovich NC, Korsunsky I, Hannes SK, Slowikowski K, Gurish MF, Donlin LT, Lederer JA, Weinblatt ME, Massarotti EM, Coblyn JS, Helfgott SM, Todd DJ, Bykerk VP, ... ... Raychaudhuri S, et al. Mixed-effects association of single cells identifies an expanded effector CD4 T cell subset in rheumatoid arthritis. Science Translational Medicine. 10. PMID 30333237 DOI: 10.1126/Scitranslmed.Aaq0305 |
0.811 |
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| 2018 |
Stanaway IB, Hall TO, Rosenthal EA, Palmer M, Naranbhai V, Knevel R, Namjou-Khales B, Carroll RJ, Kiryluk K, Gordon AS, Linder J, Howell KM, Mapes BM, Lin FTJ, Joo YY, ... ... Raychaudhuri S, et al. The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype. Genetic Epidemiology. PMID 30298529 DOI: 10.1002/Gepi.22167 |
0.363 |
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| 2018 |
Westra HJ, Martínez-Bonet M, Onengut-Gumuscu S, Lee A, Luo Y, Teslovich N, Worthington J, Martin J, Huizinga T, Klareskog L, Rantapaa-Dahlqvist S, Chen WM, Quinlan A, Todd JA, Eyre S, ... ... Raychaudhuri S, et al. Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes. Nature Genetics. PMID 30224649 DOI: 10.1038/S41588-018-0216-7 |
0.815 |
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| 2018 |
Haghighi A, Krier JB, Toth-Petroczy A, Cassa CA, Frank NY, Carmichael N, Fieg E, Bjonnes A, Mohanty A, Briere LC, Lincoln S, Lucia S, Gupta VA, Söylemez O, Sutti S, ... ... Raychaudhuri S, et al. An integrated clinical program and crowdsourcing strategy for genomic sequencing and Mendelian disease gene discovery. Npj Genomic Medicine. 3: 21. PMID 30131872 DOI: 10.1038/S41525-018-0060-9 |
0.365 |
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| 2018 |
Li G, Martínez-Bonet M, Wu D, Yang Y, Cui J, Nguyen HN, Cunin P, Levescot A, Bai M, Westra HJ, Okada Y, Brenner MB, Raychaudhuri S, Hendrickson EA, Maas RL, et al. High-throughput identification of noncoding functional SNPs via type IIS enzyme restriction. Nature Genetics. PMID 30013183 DOI: 10.1038/S41588-018-0159-Z |
0.695 |
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| 2018 |
Donlin LT, Rao DA, Wei K, Slowikowski K, McGeachy MJ, Turner JD, Meednu N, Mizoguchi F, Gutierrez-Arcelus M, Lieb DJ, Keegan J, Muskat K, Hillman J, Rozo C, Ricker E, ... ... Raychaudhuri S, et al. Methods for high-dimensonal analysis of cells dissociated from cyropreserved synovial tissue. Arthritis Research & Therapy. 20: 139. PMID 29996944 DOI: 10.1186/S13075-018-1631-Y |
0.714 |
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| 2018 |
Cortes A, Gladman D, Raychaudhuri S, Cui J, Wheeler L, Brown MA. Imputation-based analysis of alleles in the susceptibility to ankylosing spondylitis. Annals of the Rheumatic Diseases. PMID 29705741 DOI: 10.1136/Annrheumdis-2018-213413 |
0.39 |
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| 2018 |
Finucane HK, Reshef YA, Anttila V, Slowikowski K, Gusev A, Byrnes A, Gazal S, Loh PR, Lareau C, Shoresh N, Genovese G, Saunders A, Macosko E, Pollack S, ... ... Raychaudhuri S, et al. Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nature Genetics. 50: 621-629. PMID 29632380 DOI: 10.1038/S41588-018-0081-4 |
0.735 |
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| 2018 |
Mizoguchi F, Slowikowski K, Wei K, Marshall JL, Rao DA, Chang SK, Nguyen HN, Noss EH, Turner JD, Earp BE, Blazar PE, Wright J, Simmons BP, Donlin LT, Kalliolias GD, ... ... Raychaudhuri S, et al. Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis. Nature Communications. 9: 789. PMID 29476097 DOI: 10.1038/S41467-018-02892-Y |
0.747 |
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| 2018 |
Rao DA, Bocharnikov AV, Fonseka CY, Keegan J, Diamond B, Anolik JH, Nigrovic PA, Raychaudhuri S, Lederer JA, Brenner MB. AI-19 T peripheral helper cells are expanded in the circulation of active SLE patients and correlate with CD21low B cells Lupus Science & Medicine. 5. DOI: 10.1136/Lupus-2018-Lsm.19 |
0.407 |
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| 2018 |
Knevel R, Terao C, Cui J, Slowikowski K, Huizinga T, Karlson B, Liao K, Cessie Sl, Raychaudhuri S. OP0363 Optimisingprecision medicine by using genetics to assign diagnostic prior probabilities to patients with synovitis – proof of principle Annals of the Rheumatic Diseases. DOI: 10.1136/Annrheumdis-2018-Eular.4918 |
0.682 |
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| 2017 |
Terao C, Okada Y, Ikari K, Kochi Y, Suzuki A, Ohmura K, Matsuo K, Taniguchi A, Kubo M, Raychaudhuri S, Yamamoto K, Yamanaka H, Kamatani Y, Mimori T, Matsuda F. Genetic landscape of interactive effects of HLA-DRB1 alleles on susceptibility to ACPA(+) rheumatoid arthritis and ACPA levels in Japanese population. Journal of Medical Genetics. PMID 29025870 DOI: 10.1136/Jmedgenet-2017-104779 |
0.399 |
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| 2017 |
Nigrovic PA, Raychaudhuri S, Thompson SD. Genetics and the classification of arthritis in adults and children. Arthritis & Rheumatology (Hoboken, N.J.). PMID 29024575 DOI: 10.1002/Art.40350 |
0.301 |
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| 2017 |
Slowikowski K, Wei K, Brenner MB, Raychaudhuri S. Functional genomics of stromal cells in chronic inflammatory diseases. Current Opinion in Rheumatology. PMID 28984647 DOI: 10.1097/Bor.0000000000000455 |
0.732 |
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| 2017 |
Fonseka CY, Rao DA, Raychaudhuri S. Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis. Current Opinion in Immunology. 49: 27-36. PMID 28888129 DOI: 10.1016/J.Coi.2017.08.005 |
0.824 |
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| 2017 |
Scally SW, Law SC, Ting YT, Heemst JV, Sokolove J, Deutsch AJ, Bridie Clemens E, Moustakas AK, Papadopoulos GK, Woude DV, Smolik I, Hitchon CA, Robinson DB, Ferucci ED, Bernstein CN, ... ... Raychaudhuri S, et al. Molecular basis for increased susceptibility of Indigenous North Americans to seropositive rheumatoid arthritis. Annals of the Rheumatic Diseases. PMID 28801345 DOI: 10.1136/Annrheumdis-2017-211300 |
0.73 |
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| 2017 |
Aung T, Ozaki M, Lee MC, Schlötzer-Schrehardt U, Thorleifsson G, Mizoguchi T, Igo RP, Haripriya A, Williams SE, Astakhov YS, Orr AC, Burdon KP, Nakano S, Mori K, Abu-Amero K, ... ... Raychaudhuri S, et al. Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci. Nature Genetics. PMID 28553957 DOI: 10.1038/Ng.3875 |
0.407 |
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| 2017 |
Budu-Aggrey A, Bowes J, Stuart PE, Zawistowski M, Tsoi LC, Nair R, Jadon DR, McHugh N, Korendowych E, Elder JT, Barton A, Raychaudhuri S. A rare coding allele in IFIH1 is protective for psoriatic arthritis. Annals of the Rheumatic Diseases. PMID 28501801 DOI: 10.1136/Annrheumdis-2016-210592 |
0.379 |
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| 2017 |
Karnes JH, Bastarache L, Shaffer CM, Gaudieri S, Xu Y, Glazer AM, Mosley JD, Zhao S, Raychaudhuri S, Mallal S, Ye Z, Mayer JG, Brilliant MH, Hebbring SJ, Roden DM, et al. Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants. Science Translational Medicine. 9. PMID 28490672 DOI: 10.1126/Scitranslmed.Aai8708 |
0.431 |
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| 2017 |
Terao C, Kawaguchi T, Dieude P, Varga J, Kuwana M, Hudson M, Kawaguchi Y, Matucci-Cerinic M, Ohmura K, Riemekasten G, Kawasaki A, Airo P, Horita T, Oka A, Hachulla E, ... ... Raychaudhuri S, et al. Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis. Annals of the Rheumatic Diseases. PMID 28314753 DOI: 10.1136/Annrheumdis-2016-210645 |
0.403 |
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| 2017 |
Rao DA, Gurish MF, Marshall JL, Slowikowski K, Fonseka CY, Liu Y, Donlin LT, Henderson LA, Wei K, Mizoguchi F, Teslovich NC, Weinblatt ME, Massarotti EM, Coblyn JS, Helfgott SM, ... ... Raychaudhuri S, et al. Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis. Nature. 542: 110-114. PMID 28150777 DOI: 10.1038/Nature20810 |
0.797 |
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| 2017 |
Knevel R, Raychaudhuri S, Liao K, Huizinga T. THU0635 Precise and simple algorithm to identify ra cases in electronic medical records Annals of the Rheumatic Diseases. 76: 445-446. DOI: 10.1136/Annrheumdis-2017-Eular.6464 |
0.353 |
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| 2017 |
Terao C, Kawaguchi T, Dieude P, Varga J, Kuwana M, Hudson M, Kawaguchi Y, Matucci-Cerinic M, Ohmura K, Riemekasten G, Kawasaki A, Airo P, Horita T, Oka A, Hachulla E, ... ... Raychaudhuri S, et al. THU0006 Trans-ethnic meta-analysis of genome-wide association studies identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis Annals of the Rheumatic Diseases. 76: 202-202. DOI: 10.1136/Annrheumdis-2017-Eular.2165 |
0.493 |
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| 2016 |
Yu Y, Wagner EK, Souied EH, Seitsonen S, Immonen IJ, Häppölä P, Raychaudhuri S, Daly MJ, Seddon JM. Protective coding variants in CFH and PELI3 and a variant near CTRB1 are associated with age-related macular degeneration. Human Molecular Genetics. PMID 28011711 DOI: 10.1093/Hmg/Ddw336 |
0.539 |
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| 2016 |
Hinks A, Bowes J, Cobb J, Ainsworth HC, Marion MC, Comeau ME, Sudman M, Han B, Becker ML, Bohnsack JF, de Bakker PI, Haas JP, Hazen M, Lovell DJ, ... ... Raychaudhuri S, et al. Fine-mapping the MHC locus in juvenile idiopathic arthritis (JIA) reveals genetic heterogeneity corresponding to distinct adult inflammatory arthritic diseases. Annals of the Rheumatic Diseases. PMID 27998952 DOI: 10.1136/Annrheumdis-2016-210025 |
0.402 |
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| 2016 |
Cui J, Diogo D, Stahl EA, Canhao H, Mariette X, Greenberg JD, Okada Y, Pappas DA, Fulton RS, Tak PP, Nurmohamed MT, Lee A, Larson DE, Kurreeman F, Deluca TL, ... ... Raychaudhuri S, et al. The role of rare protein-coding variants to anti-TNF treatment response in rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 27788309 DOI: 10.1002/Art.39966 |
0.407 |
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| 2016 |
van der Harst P, van Setten J, Verweij N, Vogler G, Franke L, Maurano MT, Wang X, Mateo Leach I, Eijgelsheim M, Sotoodehnia N, Hayward C, Sorice R, Meirelles O, Lyytikäinen LP, Polašek O, ... ... Raychaudhuri S, et al. 52 Genetic Loci Influencing Myocardial Mass. Journal of the American College of Cardiology. 68: 1435-48. PMID 27659466 DOI: 10.1016/J.Jacc.2016.07.729 |
0.757 |
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| 2016 |
Wagner EK, Raychaudhuri S, Villalonga MB, Java A, Triebwasser MP, Daly MJ, Atkinson JP, Seddon JM. Mapping rare, deleterious mutations in Factor H: Association with early onset, drusen burden, and lower antigenic levels in familial AMD. Scientific Reports. 6: 31531. PMID 27572114 DOI: 10.1038/Srep31531 |
0.494 |
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| 2016 |
Okada Y, Suzuki A, Ikari K, Terao C, Kochi Y, Ohmura K, Higasa K, Akiyama M, Ashikawa K, Kanai M, Hirata J, Suita N, Teo YY, Xu H, Bae SC, ... ... Raychaudhuri S, et al. Contribution of a Non-classical HLA Gene, HLA-DOA, to the Risk of Rheumatoid Arthritis. American Journal of Human Genetics. 99: 366-374. PMID 27486778 DOI: 10.1016/J.Ajhg.2016.06.019 |
0.444 |
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| 2016 |
Li Z, Xia Y, Feng LN, Chen JR, Li HM, Cui J, Cai QQ, Sim KS, Nairismägi ML, Laurensia Y, Meah WY, Liu WS, Guo YM, Chen LZ, Feng QS, ... ... Raychaudhuri S, et al. Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study. The Lancet. Oncology. PMID 27470079 DOI: 10.1016/S1470-2045(16)30148-6 |
0.388 |
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| 2016 |
Prins BP, Abbasi A, Wong A, Vaez A, Nolte I, Franceschini N, Stuart PE, Guterriez Achury J, Mistry V, Bradfield JP, Valdes AM, Bras J, Shatunov A, ... ... Raychaudhuri S, et al. Investigating the Causal Relationship of C-Reactive Protein with 32 Complex Somatic and Psychiatric Outcomes: A Large-Scale Cross-Consortium Mendelian Randomization Study. Plos Medicine. 13: e1001976. PMID 27327646 DOI: 10.1371/Journal.Pmed.1001976 |
0.46 |
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| 2016 |
Pouget JG, Gonçalves VF, Spain SL, Finucane HK, Raychaudhuri S, Kennedy JL, Knight J. Genome-Wide Association Studies Suggest Limited Immune Gene Enrichment in Schizophrenia Compared to 5 Autoimmune Diseases. Schizophrenia Bulletin. PMID 27242348 DOI: 10.1093/Schbul/Sbw059 |
0.311 |
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| 2016 |
Terao C, Raychaudhuri S, Gregersen PK. Recent Advances in Defining the Genetic Basis of Rheumatoid Arthritis. Annual Review of Genomics and Human Genetics. PMID 27216775 DOI: 10.1146/Annurev-Genom-090314-045919 |
0.481 |
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| 2016 |
Han B, Pouget JG, Slowikowski K, Stahl E, Lee CH, Diogo D, Hu X, Park YR, Kim E, Gregersen PK, Dahlqvist SR, Worthington J, Martin J, Eyre S, Klareskog L, ... ... Raychaudhuri S, et al. A method to decipher pleiotropy by detecting underlying heterogeneity driven by hidden subgroups applied to autoimmune and neuropsychiatric diseases. Nature Genetics. PMID 27182969 DOI: 10.1038/Ng.3572 |
0.797 |
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| 2016 |
Gusev A, Shi H, Kichaev G, Pomerantz M, Li F, Long HW, Ingles SA, Kittles RA, Strom SS, Rybicki BA, Nemesure B, Isaacs WB, Zheng W, Pettaway CA, Yeboah ED, ... ... Raychaudhuri S, et al. Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation. Nature Communications. 7: 10979. PMID 27052111 DOI: 10.1038/Ncomms10979 |
0.677 |
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| 2016 |
Ellinghaus D, Jostins L, Spain SL, Cortes A, Bethune J, Han B, Park YR, Raychaudhuri S, Pouget JG, Hübenthal M, Folseraas T, Wang Y, Esko T, Metspalu A, Westra HJ, et al. Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. Nature Genetics. PMID 26974007 DOI: 10.1038/Ng.3528 |
0.746 |
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| 2016 |
Han B, Duong D, Sul JH, de Bakker PI, Eskin E, Raychaudhuri S. A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping. Human Molecular Genetics. PMID 26908615 DOI: 10.1093/Hmg/Ddw049 |
0.349 |
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| 2016 |
Gutierrez-Arcelus M, Rich SS, Raychaudhuri S. Autoimmune diseases - connecting risk alleles with molecular traits of the immune system. Nature Reviews. Genetics. 17: 160-74. PMID 26907721 DOI: 10.1038/Nrg.2015.33 |
0.48 |
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| 2016 |
Brynedal B, Terao C, Chen Z, Jiang X, Westerlind H, Hansson M, Jakobsson P, Skriner K, Serre G, Rönnelid J, Padyukov L, Gregersen P, Worthington J, Alfredsson L, Raychaudhuri S, et al. OP0234 Rheumatoid Arthritis Subsets Defined by Sub-Specificities of Anti-Citrullinated Antibodies (ACPAS) Have Unique HLA Associations Annals of the Rheumatic Diseases. 75: 146.2-146. DOI: 10.1136/Annrheumdis-2016-Eular.3896 |
0.392 |
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| 2015 |
Ombrello MJ, Remmers EF, Tachmazidou I, Grom A, Foell D, Haas JP, Martini A, Gattorno M, Özen S, Prahalad S, Zeft AS, Bohnsack JF, Mellins ED, Ilowite NT, Russo R, ... ... Raychaudhuri S, et al. HLA-DRB1*11 and variants of the MHC class II locus are strong risk factors for systemic juvenile idiopathic arthritis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598658 DOI: 10.1073/Pnas.1520779112 |
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| 2015 |
McLaren PJ, Coulonges C, Bartha I, Lenz TL, Deutsch AJ, Bashirova A, Buchbinder S, Carrington MN, Cossarizza A, Dalmau J, De Luca A, Goedert JJ, Gurdasani D, Haas DW, Herbeck JT, ... ... Raychaudhuri S, et al. Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553974 DOI: 10.1073/Pnas.1514867112 |
0.736 |
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| 2015 |
Gutierrez-Achury J, Zorro MM, Ricaño-Ponce I, Zhernakova DV, Diogo D, Raychaudhuri S, Franke L, Trynka G, Wijmenga C, Zhernakova A. Functional implications of disease-specific variants in loci jointly associated to coeliac disease and rheumatoid arthritis. Human Molecular Genetics. PMID 26546613 DOI: 10.1093/Hmg/Ddv455 |
0.812 |
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| 2015 |
Won HH, Natarajan P, Dobbyn A, Jordan DM, Roussos P, Lage K, Raychaudhuri S, Stahl E, Do R. Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease. Plos Genetics. 11: e1005622. PMID 26509271 DOI: 10.1371/Journal.Pgen.1005622 |
0.455 |
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| 2015 |
Triebwasser MP, Roberson ED, Yu Y, Schramm EC, Wagner EK, Raychaudhuri S, Seddon JM, Atkinson JP. Rare Variants in the Functional Domains of Complement Factor H Are Associated With Age-Related Macular Degeneration. Investigative Ophthalmology & Visual Science. 56: 6873-8. PMID 26501415 DOI: 10.1167/Iovs.15-17432 |
0.357 |
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| 2015 |
Cassa CA, Smith SE, Docken W, Hoffman E, McLaughlin H, Chun S, Leshchiner I, Miraoui H, Raychaudhuri S, Frank NY, Wilson BJ, Sunyaev SR, Maas RL, Vuzman D. An argument for early genomic sequencing in atypical cases: a WISP3 variant leads to diagnosis of progressive pseudorheumatoid arthropathy of childhood. Rheumatology (Oxford, England). PMID 26493744 DOI: 10.1093/Rheumatology/Kev367 |
0.301 |
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| 2015 |
Hayes JE, Trynka G, Vijai J, Offit K, Raychaudhuri S, Klein RJ. Tissue-Specific Enrichment of Lymphoma Risk Loci in Regulatory Elements. Plos One. 10: e0139360. PMID 26422229 DOI: 10.1371/Journal.Pone.0139360 |
0.689 |
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| 2015 |
Finucane HK, Bulik-Sullivan B, Gusev A, Trynka G, Reshef Y, Loh PR, Anttila V, Xu H, Zang C, Farh K, Ripke S, Day FR, ... ... Raychaudhuri S, et al. Partitioning heritability by functional annotation using genome-wide association summary statistics. Nature Genetics. PMID 26414678 DOI: 10.1038/Ng.3404 |
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| 2015 |
Yarwood A, Viatte S, Okada Y, Plenge R, Yamamoto K, Barton A, Symmons D, Raychaudhuri S, Klareskog L, Gregersen P, Worthington J, Eyre S. Loci associated with N-glycosylation of human IgG are not associated with rheumatoid arthritis: a Mendelian randomisation study. Annals of the Rheumatic Diseases. PMID 26386125 DOI: 10.1136/Annrheumdis-2014-207210 |
0.438 |
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| 2015 |
Lee SH, Byrne EM, Hultman CM, Kähler A, Vinkhuyzen AA, Ripke S, Andreassen OA, Frisell T, Gusev A, Hu X, Karlsson R, Mantzioris VX, McGrath JJ, Mehta D, Stahl EA, ... ... Raychaudhuri S, et al. New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis. International Journal of Epidemiology. PMID 26286434 DOI: 10.1093/Ije/Dyv136 |
0.675 |
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| 2015 |
Lenz TL, Deutsch AJ, Han B, Hu X, Okada Y, Eyre S, Knapp M, Zhernakova A, Huizinga TW, Abecasis G, Becker J, Boeckxstaens GE, Chen WM, Franke A, Gladman DD, ... ... Raychaudhuri S, et al. Widespread non-additive and interaction effects within HLA loci modulate the risk of autoimmune diseases. Nature Genetics. PMID 26258845 DOI: 10.1038/Ng.3379 |
0.813 |
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| 2015 |
Terao C, Yamakawa N, Yano K, Markusse IM, Ikari K, Yoshida S, Furu M, Hashimoto M, Ito H, Fujii T, Ohmura K, Murakami K, Takahashi M, Hamaguchi M, Tabara Y, ... ... Raychaudhuri S, et al. Rheumatoid factor is associated with the distribution of hand joint destruction in rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26245322 DOI: 10.1002/Art.39306 |
0.342 |
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| 2015 |
Hu X, Deutsch AJ, Lenz TL, Onengut-Gumuscu S, Han B, Chen WM, Howson JM, Todd JA, de Bakker PI, Rich SS, Raychaudhuri S. Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk. Nature Genetics. 47: 898-905. PMID 26168013 DOI: 10.1038/Ng.3353 |
0.769 |
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| 2015 |
Trynka G, Westra HJ, Slowikowski K, Hu X, Xu H, Stranger BE, Klein RJ, Han B, Raychaudhuri S. Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci. American Journal of Human Genetics. 97: 139-52. PMID 26140449 DOI: 10.1016/J.Ajhg.2015.05.016 |
0.818 |
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| 2015 |
Kim K, Jiang X, Cui J, Lu B, Costenbader KH, Sparks JA, Bang SY, Lee HS, Okada Y, Raychaudhuri S, Alfredsson L, Bae SC, Klareskog L, Karlson EW. Interactions between amino-acid-defined MHC class II variants and smoking for seropositive rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26098791 DOI: 10.1002/Art.39228 |
0.339 |
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| 2015 |
Ermann J, Rao DA, Teslovich NC, Brenner MB, Raychaudhuri S. Immune cell profiling to guide therapeutic decisions in rheumatic diseases. Nature Reviews. Rheumatology. PMID 26034835 DOI: 10.1038/Nrrheum.2015.71 |
0.761 |
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| 2015 |
Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/J.Ajhg.2015.04.012 |
0.374 |
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| 2015 |
Scott IC, Rijsdijk F, Walker J, Quist J, Spain SL, Tan R, Steer S, Okada Y, Raychaudhuri S, Cope AP, Lewis CM. Do Genetic Susceptibility Variants Associate with Disease Severity in Early Active Rheumatoid Arthritis? The Journal of Rheumatology. 42: 1131-40. PMID 25979711 DOI: 10.3899/Jrheum.141211 |
0.417 |
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| 2015 |
Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons DP, Worthington J, Young A, Hyrich KL, Morgan AW, Wilson AG, Isaacs JD, Raychaudhuri S, Barton A. Association of HLA-DRB1 haplotypes with rheumatoid arthritis severity, mortality, and treatment response. Jama. 313: 1645-56. PMID 25919528 DOI: 10.1001/Jama.2015.3435 |
0.399 |
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| 2015 |
Gutierrez-Achury J, Zhernakova A, Pulit SL, Trynka G, Hunt KA, Romanos J, Raychaudhuri S, van Heel DA, Wijmenga C, de Bakker PI. Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease. Nature Genetics. 47: 577-8. PMID 25894500 DOI: 10.1038/Ng.3268 |
0.73 |
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| 2015 |
Diogo D, Bastarache L, Liao KP, Graham RR, Fulton RS, Greenberg JD, Eyre S, Bowes J, Cui J, Lee A, Pappas DA, Kremer JM, Barton A, Coenen MJ, Franke B, ... ... Raychaudhuri S, et al. TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits. Plos One. 10: e0122271. PMID 25849893 DOI: 10.1371/Journal.Pone.0122271 |
0.46 |
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| 2015 |
Kavanagh D, Yu Y, Schramm EC, Triebwasser M, Wagner EK, Raychaudhuri S, Daly MJ, Atkinson JP, Seddon JM. Rare genetic variants in the CFI gene are associated with advanced age-related macular degeneration and commonly result in reduced serum factor I levels. Human Molecular Genetics. 24: 3861-70. PMID 25788521 DOI: 10.1093/Hmg/Ddv091 |
0.529 |
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| 2015 |
Pers TH, Karjalainen JM, Chan Y, Westra HJ, Wood AR, Yang J, Lui JC, Vedantam S, Gustafsson S, Esko T, Frayling T, Speliotes EK, Boehnke M, Raychaudhuri S, et al. Biological interpretation of genome-wide association studies using predicted gene functions. Nature Communications. 6: 5890. PMID 25597830 DOI: 10.1038/Ncomms6890 |
0.739 |
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| 2015 |
van Steenbergen HW, Raychaudhuri S, Rodríguez-Rodríguez L, Rantapää-Dahlqvist S, Berglin E, Toes RE, Huizinga TW, Fernández-Gutiérrez B, Gregersen PK, van der Helm-van Mil AH. Association of valine and leucine at HLA-DRB1 position 11 with radiographic progression in rheumatoid arthritis, independent of the shared epitope alleles but not independent of anti-citrullinated protein antibodies. Arthritis & Rheumatology (Hoboken, N.J.). 67: 877-86. PMID 25580908 DOI: 10.1002/Art.39018 |
0.383 |
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| 2015 |
Kim K, Bang SY, Lee HS, Cho SK, Choi CB, Sung YK, Kim TH, Jun JB, Yoo DH, Kang YM, Kim SK, Suh CH, Shim SC, Lee SS, Lee J, ... ... Raychaudhuri S, et al. High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci. Annals of the Rheumatic Diseases. 74: e13. PMID 24532676 DOI: 10.1136/Annrheumdis-2013-204749 |
0.432 |
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| 2015 |
Yarwood A, Han B, Raychaudhuri S, Bowes J, Lunt M, Pappas DA, Kremer J, Greenberg JD, Plenge R, Worthington J, Barton A, Eyre S. A weighted genetic risk score using all known susceptibility variants to estimate rheumatoid arthritis risk. Annals of the Rheumatic Diseases. 74: 170-6. PMID 24092415 DOI: 10.1136/Annrheumdis-2013-204133 |
0.408 |
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| 2015 |
Hayes JE, Trynka G, Vijai J, Offit K, Raychaudhuri S, Klein RJ. Overlap of lymphoma risk SNPs with regulatory regions in GM12878. Plos One. DOI: 10.1371/Journal.Pone.0139360.G002 |
0.638 |
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| 2015 |
Raychaudhuri S. SP0058 Fine-Mapping Causal Genetic Alleles in Rheumatoid Arthritis and Type I Diabetes Annals of the Rheumatic Diseases. 74: 16-16. DOI: 10.1136/Annrheumdis-2015-Eular.6841 |
0.47 |
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| 2015 |
Hinks A, Cobb J, Bowes J, Han B, Ainsworth H, Marion M, Sudman M, Bohnsack J, Wedderburn L, Haas J, Videm V, Rygg M, Nordal E, Brown M, Yeung R, ... ... Raychaudhuri S, et al. OP0121 Analysis of the MHC Region in a Large Cohort of Juvenile Idiopathic Arthritis Cases Identifies Independent Effects at HLA-DRB1 for the Most Common Subtypes of JIA Annals of the Rheumatic Diseases. 74: 114.1-114. DOI: 10.1136/Annrheumdis-2015-Eular.3887 |
0.391 |
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| 2015 |
Rao D, Chicoine A, Nigrovic P, Raychaudhuri S, Brenner M. A1.29 CD4+T cell subpopulations in blood and synovial fluid defined by differential expression of integrins Annals of the Rheumatic Diseases. 74: A12.2-A13. DOI: 10.1136/Annrheumdis-2015-207259.29 |
0.332 |
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| 2015 |
Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons DPM, Worthington J, Young A, Hyrich KL, Morgan AW, Wilson AG, Isaacs JD, Raychaudhuri S, Barton A. O49. Personalized Genetic Medicine: Amino Acid Positions 11, 71 and 74 in HLA-DRB1 Predict Disease Severity, Mortality and Treatment Response in Rheumatoid Arthritis—Multi-Centre Prospective Cohort Studies Rheumatology. 54. DOI: 10.1093/Rheumatology/Kev087.001 |
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| 2014 |
Reynolds RJ, Ahmed AF, Danila MI, Hughes LB, Gregersen PK, Raychaudhuri S, Plenge RM, Bridges SL. HLA-DRB1-associated rheumatoid arthritis risk at multiple levels in African Americans: hierarchical classification systems, amino acid positions, and residues. Arthritis & Rheumatology (Hoboken, N.J.). 66: 3274-82. PMID 25524867 DOI: 10.1002/Art.38855 |
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| 2014 |
Frisell T, Hellgren K, Alfredsson L, Raychaudhuri S, Klareskog L, Askling J. Familial aggregation of arthritis-related diseases in seropositive and seronegative rheumatoid arthritis: a register-based case-control study in Sweden. Annals of the Rheumatic Diseases. PMID 25498119 DOI: 10.1136/Annrheumdis-2014-206133 |
0.37 |
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| 2014 |
Roussos P, Mitchell AC, Voloudakis G, Fullard JF, Pothula VM, Tsang J, Stahl EA, Georgakopoulos A, Ruderfer DM, Charney A, Okada Y, Siminovitch KA, Worthington J, Padyukov L, Klareskog L, ... ... Raychaudhuri S, et al. A role for noncoding variation in schizophrenia. Cell Reports. 9: 1417-29. PMID 25453756 DOI: 10.1016/J.Celrep.2014.10.015 |
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| 2014 |
Gusev A, Lee SH, Trynka G, Finucane H, Vilhjálmsson BJ, Xu H, Zang C, Ripke S, Bulik-Sullivan B, Stahl E, Kähler AK, Hultman CM, Purcell SM, ... ... Raychaudhuri S, et al. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases. American Journal of Human Genetics. 95: 535-52. PMID 25439723 DOI: 10.1016/J.Ajhg.2014.10.004 |
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| 2014 |
Lim ET, Liu YP, Chan Y, Tiinamaija T, Käräjämäki A, Madsen E, Altshuler DM, Raychaudhuri S, Groop L, Flannick J, Hirschhorn JN, Katsanis N, Daly MJ. A novel test for recessive contributions to complex diseases implicates Bardet-Biedl syndrome gene BBS10 in idiopathic type 2 diabetes and obesity. American Journal of Human Genetics. 95: 509-20. PMID 25439097 DOI: 10.1016/J.Ajhg.2014.09.015 |
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| 2014 |
Dunstan SJ, Hue NT, Han B, Li Z, Tram TT, Sim KS, Parry CM, Chinh NT, Vinh H, Lan NP, Thieu NT, Vinh PV, Koirala S, Dongol S, Arjyal A, ... ... Raychaudhuri S, et al. Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature Genetics. 46: 1333-6. PMID 25383971 DOI: 10.1038/Ng.3143 |
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| 2014 |
Okada Y, Han B, Tsoi LC, Stuart PE, Ellinghaus E, Tejasvi T, Chandran V, Pellett F, Pollock R, Bowcock AM, Krueger GG, Weichenthal M, Voorhees JJ, Rahman P, Gregersen PK, ... ... Raychaudhuri S, et al. Fine mapping major histocompatibility complex associations in psoriasis and its clinical subtypes. American Journal of Human Genetics. 95: 162-72. PMID 25087609 DOI: 10.1016/J.Ajhg.2014.07.002 |
0.379 |
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| 2014 |
Okada Y, Kim K, Han B, Pillai NE, Ong RT, Saw WY, Luo M, Jiang L, Yin J, Bang SY, Lee HS, Brown MA, Bae SC, Xu H, Teo YY, ... ... Raychaudhuri S, et al. Risk for ACPA-positive rheumatoid arthritis is driven by shared HLA amino acid polymorphisms in Asian and European populations. Human Molecular Genetics. 23: 6916-26. PMID 25070946 DOI: 10.1093/Hmg/Ddu387 |
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| 2014 |
Schramm EC, Clark SJ, Triebwasser MP, Raychaudhuri S, Seddon JM, Atkinson JP. Genetic variants in the complement system predisposing to age-related macular degeneration: a review. Molecular Immunology. 61: 118-25. PMID 25034031 DOI: 10.1016/J.Molimm.2014.06.032 |
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| 2014 |
Hu X, Kim H, Raj T, Brennan PJ, Trynka G, Teslovich N, Slowikowski K, Chen WM, Onengut S, Baecher-Allan C, De Jager PL, Rich SS, Stranger BE, Brenner MB, Raychaudhuri S. Regulation of gene expression in autoimmune disease loci and the genetic basis of proliferation in CD4+ effector memory T cells. Plos Genetics. 10: e1004404. PMID 24968232 DOI: 10.1371/Journal.Pgen.1004404 |
0.834 |
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| 2014 |
Arking DE, Pulit SL, Crotti L, van der Harst P, Munroe PB, Koopmann TT, Sotoodehnia N, Rossin EJ, Morley M, Wang X, Johnson AD, Lundby A, Gudbjartsson DF, Noseworthy PA, Eijgelsheim M, ... ... Raychaudhuri S, et al. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. Nature Genetics. 46: 826-36. PMID 24952745 DOI: 10.1038/Ng.3014 |
0.785 |
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| 2014 |
Yu Y, Triebwasser MP, Wong EK, Schramm EC, Thomas B, Reynolds R, Mardis ER, Atkinson JP, Daly M, Raychaudhuri S, Kavanagh D, Seddon JM. Whole-exome sequencing identifies rare, functional CFH variants in families with macular degeneration. Human Molecular Genetics. 23: 5283-93. PMID 24847005 DOI: 10.1093/Hmg/Ddu226 |
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| 2014 |
Slowikowski K, Hu X, Raychaudhuri S. SNPsea: an algorithm to identify cell types, tissues and pathways affected by risk loci. Bioinformatics (Oxford, England). 30: 2496-7. PMID 24813542 DOI: 10.1093/Bioinformatics/Btu326 |
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| 2014 |
Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, ... ... Raychaudhuri S, et al. Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes. Science (New York, N.Y.). 344: 519-23. PMID 24786080 DOI: 10.1126/Science.1249547 |
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| 2014 |
Pillai NE, Okada Y, Saw WY, Ong RT, Wang X, Tantoso E, Xu W, Peterson TA, Bielawny T, Ali M, Tay KY, Poh WT, Tan LW, Koo SH, Lim WY, ... ... Raychaudhuri S, et al. Predicting HLA alleles from high-resolution SNP data in three Southeast Asian populations. Human Molecular Genetics. 23: 4443-51. PMID 24698974 DOI: 10.1093/Hmg/Ddu149 |
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| 2014 |
Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, ... ... Raychaudhuri S, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology. 15: R53. PMID 24667040 DOI: 10.1186/Gb-2014-15-3-R53 |
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| 2014 |
Han B, Diogo D, Eyre S, Kallberg H, Zhernakova A, Bowes J, Padyukov L, Okada Y, González-Gay MA, Rantapää-Dahlqvist S, Martin J, Huizinga TW, Plenge RM, Worthington J, Gregersen PK, ... ... Raychaudhuri S, et al. Fine mapping seronegative and seropositive rheumatoid arthritis to shared and distinct HLA alleles by adjusting for the effects of heterogeneity. American Journal of Human Genetics. 94: 522-32. PMID 24656864 DOI: 10.1016/J.Ajhg.2014.02.013 |
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| 2014 |
Lee MN, Ye C, Villani AC, Raj T, Li W, Eisenhaure TM, Imboywa SH, Chipendo PI, Ran FA, Slowikowski K, Ward LD, Raddassi K, McCabe C, Lee MH, Frohlich IY, ... ... Raychaudhuri S, et al. Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science (New York, N.Y.). 343: 1246980. PMID 24604203 DOI: 10.1126/Science.1246980 |
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| 2014 |
Okada Y, Diogo D, Greenberg JD, Mouassess F, Achkar WA, Fulton RS, Denny JC, Gupta N, Mirel D, Gabriel S, Li G, Kremer JM, Pappas DA, Carroll RJ, Eyler AE, ... ... Raychaudhuri S, et al. Integration of sequence data from a Consanguineous family with genetic data from an outbred population identifies PLB1 as a candidate rheumatoid arthritis risk gene. Plos One. 9: e87645. PMID 24520335 DOI: 10.1371/Journal.Pone.0087645 |
0.712 |
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| 2014 |
Mahajan A, Go MJ, Zhang W, Below JE, Gaulton KJ, Ferreira T, Horikoshi M, Johnson AD, Ng MC, Prokopenko I, ... ... Raychaudhuri S, et al. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. Nature Genetics. 46: 234-44. PMID 24509480 DOI: 10.1038/Ng.2897 |
0.484 |
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| 2014 |
Okada Y, Wu D, Trynka G, Raj T, Terao C, Ikari K, Kochi Y, Ohmura K, Suzuki A, Yoshida S, Graham RR, Manoharan A, Ortmann W, Bhangale T, Denny JC, ... ... Raychaudhuri S, et al. Genetics of rheumatoid arthritis contributes to biology and drug discovery. Nature. 506: 376-81. PMID 24390342 DOI: 10.1038/Nature12873 |
0.83 |
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| 2014 |
Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E. Fast pairwise IBD association testing in genome-wide association studies. Bioinformatics (Oxford, England). 30: 206-13. PMID 24158599 DOI: 10.1093/Bioinformatics/Btt609 |
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| 2014 |
Liao KP, Diogo D, Cui J, Cai T, Okada Y, Gainer VS, Murphy SN, Gupta N, Mirel D, Ananthakrishnan AN, Szolovits P, Shaw SY, Raychaudhuri S, Churchill S, Kohane I, et al. Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls. Annals of the Rheumatic Diseases. 73: 1170-5. PMID 23716066 DOI: 10.1136/Annrheumdis-2012-203202 |
0.364 |
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| 2014 |
Scott I, Walker J, Quist J, Spain S, Tan R, Steer S, Okada Y, Raychaudhuri S, Cope A, Lewis C. AB0006 Genetic Susceptibility Variants for Rheumatoid Arthritis do not Associate with Radiological Progression in Early Active Disease: Table 1. Annals of the Rheumatic Diseases. 73: 805.3-806. DOI: 10.1136/Annrheumdis-2014-Eular.5018 |
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| 2014 |
Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons D, Worthington J, Young A, Hyrich K, Morgan A, Wilson A, Isaacs J, Raychaudhuri S, Barton A. OP0190 Personalized Genetic Medicine: Amino Acid Positions 11, 71 and 74 in HLA-DRB1 PREDICT Disease Severity, Treatment Response and Mortality in Rheumatoid Arthritis; Multi-Centre Prospective Cohort Studies Annals of the Rheumatic Diseases. 73: 134.2-134. DOI: 10.1136/Annrheumdis-2014-Eular.3155 |
0.41 |
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| 2014 |
Scott IC, Walker J, Quist J, Spain S, Tan R, Okada Y, Raychaudhuri S, Steer S, Cope AP, Lewis CM. 264. Genetic Susceptibility Variants for Rheumatoid Arthritis do not Associate with Radiological Progression in Early Active Disease Rheumatology. 53: i158-i158. DOI: 10.1093/Rheumatology/Keu122.002 |
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| 2013 |
Gusev A, Bhatia G, Zaitlen N, Vilhjalmsson BJ, Diogo D, Stahl EA, Gregersen PK, Worthington J, Klareskog L, Raychaudhuri S, Plenge RM, Pasaniuc B, Price AL. Quantifying missing heritability at known GWAS loci. Plos Genetics. 9: e1003993. PMID 24385918 DOI: 10.1371/Journal.Pgen.1003993 |
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| 2013 |
Trynka G, Raychaudhuri S. Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases. Current Opinion in Genetics & Development. 23: 635-41. PMID 24287333 DOI: 10.1016/J.Gde.2013.10.009 |
0.702 |
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| 2013 |
Hu X, Kim H, Brennan PJ, Han B, Baecher-Allan CM, De Jager PL, Brenner MB, Raychaudhuri S. Application of user-guided automated cytometric data analysis to large-scale immunoprofiling of invariant natural killer T cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 19030-5. PMID 24191009 DOI: 10.1073/Pnas.1318322110 |
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| 2013 |
Seddon JM, Yu Y, Miller EC, Reynolds R, Tan PL, Gowrisankar S, Goldstein JI, Triebwasser M, Anderson HE, Zerbib J, Kavanagh D, Souied E, Katsanis N, Daly MJ, Atkinson JP, ... Raychaudhuri S, et al. Rare variants in CFI, C3 and C9 are associated with high risk of advanced age-related macular degeneration. Nature Genetics. 45: 1366-70. PMID 24036952 DOI: 10.1038/Ng.2741 |
0.507 |
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| 2013 |
Lee SH, Ripke S, Neale BM, Faraone SV, Purcell SM, Perlis RH, Mowry BJ, Thapar A, Goddard ME, Witte JS, Absher D, Agartz I, Akil H, Amin F, ... ... Raychaudhuri S, et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genetics. 45: 984-94. PMID 23933821 DOI: 10.1038/Ng.2711 |
0.423 |
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| 2013 |
Jia X, Han B, Onengut-Gumuscu S, Chen WM, Concannon PJ, Rich SS, Raychaudhuri S, de Bakker PI. Imputing amino acid polymorphisms in human leukocyte antigens. Plos One. 8: e64683. PMID 23762245 DOI: 10.1371/Journal.Pone.0064683 |
0.393 |
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| 2013 |
Xie G, Roshandel D, Sherva R, Monach PA, Lu EY, Kung T, Carrington K, Zhang SS, Pulit SL, Ripke S, Carette S, Dellaripa PF, Edberg JC, Hoffman GS, Khalidi N, ... ... Raychaudhuri S, et al. Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. Arthritis and Rheumatism. 65: 2457-68. PMID 23740775 DOI: 10.1002/Art.38036 |
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| 2013 |
Li G, Diogo D, Wu D, Spoonamore J, Dancik V, Franke L, Kurreeman F, Rossin EJ, Duclos G, Hartland C, Zhou X, Li K, Liu J, De Jager PL, Siminovitch KA, ... ... Raychaudhuri S, et al. Human genetics in rheumatoid arthritis guides a high-throughput drug screen of the CD40 signaling pathway. Plos Genetics. 9: e1003487. PMID 23696745 DOI: 10.1371/Journal.Pgen.1003487 |
0.602 |
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| 2013 |
Cui J, Stahl EA, Saevarsdottir S, Miceli C, Diogo D, Trynka G, Raj T, Mirkov MU, Canhao H, Ikari K, Terao C, Okada Y, Wedrén S, Askling J, Yamanaka H, ... ... Raychaudhuri S, et al. Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis. Plos Genetics. 9: e1003394. PMID 23555300 DOI: 10.1371/Journal.Pgen.1003394 |
0.709 |
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| 2013 |
Raj T, Kuchroo M, Replogle JM, Raychaudhuri S, Stranger BE, De Jager PL. Common risk alleles for inflammatory diseases are targets of recent positive selection. American Journal of Human Genetics. 92: 517-29. PMID 23522783 DOI: 10.1016/J.Ajhg.2013.03.001 |
0.438 |
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| 2013 |
Viatte S, Plant D, Raychaudhuri S. Genetics and epigenetics of rheumatoid arthritis. Nature Reviews. Rheumatology. 9: 141-53. PMID 23381558 DOI: 10.1038/Nrrheum.2012.237 |
0.422 |
|
| 2013 |
Lim ET, Raychaudhuri S, Sanders SJ, Stevens C, Sabo A, MacArthur DG, Neale BM, Kirby A, Ruderfer DM, Fromer M, Lek M, Liu L, Flannick J, Ripke S, Nagaswamy U, et al. Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders. Neuron. 77: 235-42. PMID 23352160 DOI: 10.1016/J.Neuron.2012.12.029 |
0.469 |
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| 2013 |
Hwang JY, Lee SH, Go MJ, Kim BJ, Kou I, Ikegawa S, Guo Y, Deng HW, Raychaudhuri S, Kim YJ, Oh JH, Kim Y, Moon S, Kim DJ, Koo H, et al. Meta-analysis identifies a MECOM gene as a novel predisposing factor of osteoporotic fracture. Journal of Medical Genetics. 50: 212-9. PMID 23349225 DOI: 10.1136/Jmedgenet-2012-101156 |
0.376 |
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| 2013 |
Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S. Chromatin marks identify critical cell types for fine mapping complex trait variants Nature Genetics. 45: 124-130. PMID 23263488 DOI: 10.1038/Ng.2504 |
0.708 |
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| 2013 |
Diogo D, Kurreeman F, Stahl EA, Liao KP, Gupta N, Greenberg JD, Rivas MA, Hickey B, Flannick J, Thomson B, Guiducci C, Ripke S, Adzhubey I, Barton A, Kremer JM, ... ... Raychaudhuri S, et al. Rare, low-frequency, and common variants in the protein-coding sequence of biological candidate genes from GWASs contribute to risk of rheumatoid arthritis. American Journal of Human Genetics. 92: 15-27. PMID 23261300 DOI: 10.1016/J.Ajhg.2012.11.012 |
0.431 |
|
| 2013 |
Hinks A, Cobb J, Han B, Marion M, Sudman M, Martin P, Bohnsack J, Wedderburn L, Haas J, De Bakker P, Langefeld C, Raychaudhuri S, Prahalad S, Thompson S, Thomson W. PReS-FINAL-2135: Analysis of the HLA region in a large cohort of juvenile idiopathic arthritis cases identifies independent effects at HLA-DRB1 Pediatric Rheumatology. 11. DOI: 10.1186/1546-0096-11-S2-P148 |
0.422 |
|
| 2013 |
Yarwood A, Lunt M, Han B, Raychaudhuri S, Bowes J, Barton A, Eyre S, Raci. THU0010 A Weighted Genetic Risk Score Using 46 Loci to Predict Rheumatoid Arthritis Risk Annals of the Rheumatic Diseases. 72. DOI: 10.1136/Annrheumdis-2013-Eular.538 |
0.446 |
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| 2013 |
Eyre S, Bowes J, Diogo D, Raychaudhuri S, Stahl E, Zhernakova A, Padyukov L, Amos C, Plenge R, Klareskog L, Gregersen P, Worthington J. OP0208 High density fine mapping in rheumatoid arthritis indentifies 14 new loci: Annals of the Rheumatic Diseases. 71: 126.1-126. DOI: 10.1136/Annrheumdis-2012-Eular.1891 |
0.476 |
|
| 2013 |
Xie G, Roschandel D, Sherva R, Monach P, Lu Y, Kung T, Carrington K, Carette S, Dellaripa P, Edberg J, Hoffman G, Khalidi N, Langford C, Mahr A, St. Clair E, ... ... Raychaudhuri S, et al. Granulomatosis with polyangiitis (Wegener's) is associated with HLA-DPB1*04 and EMA6A gene variants. Evidence from a genome-wide analysis La Presse MéDicale. 42: 668. DOI: 10.1016/J.Lpm.2013.02.042 |
0.403 |
|
| 2012 |
Eyre S, Bowes J, Diogo D, Lee A, Barton A, Martin P, Zhernakova A, Stahl E, Viatte S, McAllister K, Amos CI, Padyukov L, Toes RE, Huizinga TW, Wijmenga C, ... ... Raychaudhuri S, et al. High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis. Nature Genetics. 44: 1336-40. PMID 23143596 DOI: 10.1038/Ng.2462 |
0.826 |
|
| 2012 |
Jostins L, Ripke S, Weersma RK, Duerr RH, McGovern DP, Hui KY, Lee JC, Schumm LP, Sharma Y, Anderson CA, Essers J, Mitrovic M, Ning K, Cleynen I, Theatre E, ... ... Raychaudhuri S, et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature. 491: 119-24. PMID 23128233 DOI: 10.1038/Nature11582 |
0.75 |
|
| 2012 |
Raychaudhuri S, Rich SS. Autoimmunity: insights from human genomics. Current Opinion in Immunology. 24: 513-5. PMID 23036514 DOI: 10.1016/J.Coi.2012.09.006 |
0.303 |
|
| 2012 |
de Bakker PI, Raychaudhuri S. Interrogating the major histocompatibility complex with high-throughput genomics. Human Molecular Genetics. 21: R29-36. PMID 22976473 DOI: 10.1093/Hmg/Dds384 |
0.427 |
|
| 2012 |
Scott RA, Lagou V, Welch RP, Wheeler E, Montasser ME, Luan J, Mägi R, Strawbridge RJ, Rehnberg E, Gustafsson S, Kanoni S, Rasmussen-Torvik LJ, Yengo L, Lecoeur C, Shungin D, ... ... Raychaudhuri S, et al. Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways. Nature Genetics. 44: 991-1005. PMID 22885924 DOI: 10.1038/Ng.2385 |
0.394 |
|
| 2012 |
Morris AP, Voight BF, Teslovich TM, Ferreira T, Segrè AV, Steinthorsdottir V, Strawbridge RJ, Khan H, Grallert H, Mahajan A, Prokopenko I, Kang HM, Dina C, Esko T, Fraser RM, ... ... Raychaudhuri S, et al. Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nature Genetics. 44: 981-90. PMID 22885922 DOI: 10.1038/Ng.2383 |
0.399 |
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| 2012 |
Sobrin L, Ripke S, Yu Y, Fagerness J, Bhangale TR, Tan PL, Souied EH, Buitendijk GH, Merriam JE, Richardson AJ, Raychaudhuri S, Reynolds R, Chin KA, Lee AY, Leveziel N, et al. Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes. Ophthalmology. 119: 1874-85. PMID 22705344 DOI: 10.1016/J.Ophtha.2012.03.014 |
0.516 |
|
| 2012 |
Stahl EA, Raychaudhuri S. Rheumatoid arthritis. Evidence for a genetic component to disease severity in RA. Nature Reviews. Rheumatology. 8: 312-3. PMID 22647779 DOI: 10.1038/Nrrheum.2012.74 |
0.404 |
|
| 2012 |
Invernizzi P, Ransom M, Raychaudhuri S, Kosoy R, Lleo A, Shigeta R, Franke A, Bossa F, Amos CI, Gregersen PK, Siminovitch KA, Cusi D, de Bakker PI, Podda M, Gershwin ME, et al. Classical HLA-DRB1 and DPB1 alleles account for HLA associations with primary biliary cirrhosis. Genes and Immunity. 13: 461-8. PMID 22573116 DOI: 10.1038/Gene.2012.17 |
0.387 |
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| 2012 |
Estrada K, Styrkarsdottir U, Evangelou E, Hsu YH, Duncan EL, Ntzani EE, Oei L, Albagha OM, Amin N, Kemp JP, Koller DL, Li G, Liu CT, Minster RL, Moayyeri A, ... ... Raychaudhuri S, et al. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Nature Genetics. 44: 491-501. PMID 22504420 DOI: 10.1038/Ng.2249 |
0.324 |
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| 2012 |
Dastani Z, Hivert MF, Timpson N, Perry JR, Yuan X, Scott RA, Henneman P, Heid IM, Kizer JR, Lyytikäinen LP, Fuchsberger C, Tanaka T, Morris AP, Small K, Isaacs A, ... ... Raychaudhuri S, et al. Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. Plos Genetics. 8: e1002607. PMID 22479202 DOI: 10.1371/Journal.Pgen.1002607 |
0.586 |
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| 2012 |
Stahl EA, Wegmann D, Trynka G, Gutierrez-Achury J, Do R, Voight BF, Kraft P, Chen R, Kallberg HJ, Kurreeman FA, Kathiresan S, Wijmenga C, Gregersen PK, ... ... Raychaudhuri S, et al. Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis. Nature Genetics. 44: 483-9. PMID 22446960 DOI: 10.1038/Ng.2232 |
0.758 |
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| 2012 |
Kurreeman FA, Stahl EA, Okada Y, Liao K, Diogo D, Raychaudhuri S, Freudenberg J, Kochi Y, Patsopoulos NA, Gupta N, Sandor C, Bang SY, Lee HS, Padyukov L, et al. Use of a multiethnic approach to identify rheumatoid- arthritis-susceptibility loci, 1p36 and 17q12. American Journal of Human Genetics. 90: 524-32. PMID 22365150 DOI: 10.1016/J.Ajhg.2012.01.010 |
0.438 |
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| 2012 |
Raychaudhuri S, Sandor C, Stahl EA, Freudenberg J, Lee HS, Jia X, Alfredsson L, Padyukov L, Klareskog L, Worthington J, Siminovitch KA, Bae SC, Plenge RM, Gregersen PK, de Bakker PI. Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis. Nature Genetics. 44: 291-6. PMID 22286218 DOI: 10.1038/Ng.1076 |
0.388 |
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| 2012 |
Palmer ND, McDonough CW, Hicks PJ, Roh BH, Wing MR, An SS, Hester JM, Cooke JN, Bostrom MA, Rudock ME, Talbert ME, Lewis JP, Ferrara A, ... ... Raychaudhuri S, et al. A genome-wide association search for type 2 diabetes genes in African Americans. Plos One. 7: e29202. PMID 22238593 DOI: 10.1371/Journal.Pone.0029202 |
0.622 |
|
| 2011 |
Hu X, Kim H, Stahl E, Plenge R, Daly M, Raychaudhuri S. Integrating Autoimmune Risk Loci with Gene-Expression Data Identifies Specific Pathogenic Immune Cell Subsets. American Journal of Human Genetics. 89: 682. PMID 27880885 DOI: 10.1016/j.ajhg.2011.10.010 |
0.485 |
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| 2011 |
Trouw LA, Böhringer S, Daha NA, Stahl EA, Raychaudhuri S, Kurreeman FA, Stoeken-Rijsbergen G, Houwing-Duistermaat JJ, Huizinga TW, Toes RE. The major risk alleles of age-related macular degeneration (AMD) in CFH do not play a major role in rheumatoid arthritis (RA). Clinical and Experimental Immunology. 166: 333-7. PMID 22059990 DOI: 10.1111/J.1365-2249.2011.04482.X |
0.42 |
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| 2011 |
Raychaudhuri S, Iartchouk O, Chin K, Tan PL, Tai AK, Ripke S, Gowrisankar S, Vemuri S, Montgomery K, Yu Y, Reynolds R, Zack DJ, Campochiaro B, Campochiaro P, Katsanis N, et al. A rare penetrant mutation in CFH confers high risk of age-related macular degeneration. Nature Genetics. 43: 1232-6. PMID 22019782 DOI: 10.1038/Ng.976 |
0.508 |
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| 2011 |
Hu X, Kim H, Stahl E, Plenge R, Daly M, Raychaudhuri S. Integrating autoimmune risk loci with gene-expression data identifies specific pathogenic immune cell subsets. American Journal of Human Genetics. 89: 496-506. PMID 21963258 DOI: 10.1016/J.Ajhg.2011.09.002 |
0.769 |
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| 2011 |
Raychaudhuri S. Mapping rare and common causal alleles for complex human diseases. Cell. 147: 57-69. PMID 21962507 DOI: 10.1016/J.Cell.2011.09.011 |
0.404 |
|
| 2011 |
Sklar P, Ripke S, Scott LJ, Andreassen OA, Cichon S, Craddock N, Edenberg HJ, Nurnberger JI, Rietschel M, Blackwood D, Corvin A, Flickinger M, Guan W, Mattingsdal M, McQuillin A, ... ... Raychaudhuri S, et al. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4 Nature Genetics. 43: 977-985. PMID 21926972 DOI: 10.1038/Ng.943 |
0.476 |
|
| 2011 |
Yu Y, Bhangale TR, Fagerness J, Ripke S, Thorleifsson G, Tan PL, Souied EH, Richardson AJ, Merriam JE, Buitendijk GH, Reynolds R, Raychaudhuri S, Chin KA, Sobrin L, Evangelou E, et al. Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration. Human Molecular Genetics. 20: 3699-709. PMID 21665990 DOI: 10.1093/Hmg/Ddr270 |
0.505 |
|
| 2011 |
Raychaudhuri S. VIZ-GRAIL: visualizing functional connections across disease loci. Bioinformatics (Oxford, England). 27: 1589-90. PMID 21505031 DOI: 10.1093/Bioinformatics/Btr185 |
0.407 |
|
| 2011 |
Janse M, Lamberts LE, Franke L, Raychaudhuri S, Ellinghaus E, Muri Boberg K, Melum E, Folseraas T, Schrumpf E, Bergquist A, Björnsson E, Fu J, Jan Westra H, Groen HJ, Fehrmann RS, et al. Three ulcerative colitis susceptibility loci are associated with primary sclerosing cholangitis and indicate a role for IL2, REL, and CARD9. Hepatology (Baltimore, Md.). 53: 1977-85. PMID 21425313 DOI: 10.1002/Hep.24307 |
0.667 |
|
| 2011 |
Chen R, Stahl EA, Kurreeman FA, Gregersen PK, Siminovitch KA, Worthington J, Padyukov L, Raychaudhuri S, Plenge RM. Fine mapping the TAGAP risk locus in rheumatoid arthritis. Genes and Immunity. 12: 314-8. PMID 21390051 DOI: 10.1038/Gene.2011.8 |
0.444 |
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| 2011 |
Zhernakova A, Stahl EA, Trynka G, Raychaudhuri S, Festen EA, Franke L, Westra HJ, Fehrmann RS, Kurreeman FA, Thomson B, Gupta N, Romanos J, McManus R, Ryan AW, Turner G, et al. Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci. Plos Genetics. 7: e1002004. PMID 21383967 DOI: 10.1371/Journal.Pgen.1002004 |
0.836 |
|
| 2011 |
Rossin EJ, Lage K, Raychaudhuri S, Xavier RJ, Tatar D, Benita Y, Cotsapas C, Daly MJ. Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology. Plos Genetics. 7: e1001273. PMID 21249183 DOI: 10.1371/Journal.Pgen.1001273 |
0.575 |
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| 2011 |
Kurreeman F, Liao K, Chibnik L, Hickey B, Stahl E, Gainer V, Li G, Bry L, Mahan S, Ardlie K, Thomson B, Szolovits P, Churchill S, Murphy SN, Cai T, ... Raychaudhuri S, et al. Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records. American Journal of Human Genetics. 88: 57-69. PMID 21211616 DOI: 10.1016/J.Ajhg.2010.12.007 |
0.449 |
|
| 2011 |
Shi J, Bohringer S, Stahl EA, Raychaudhuri S, Kurreeman FA, Houwing-Duistermaat JJ, Huizinga TW, Toes RE, Trouw LA. The major risk alleles of age related macular degeneration in CFH, do not play a major role in rheumatoid arthritis Annals of the Rheumatic Diseases. 70: A17-A18. DOI: 10.1136/Ard.2010.148965.12 |
0.438 |
|
| 2011 |
Janse M, Lamberts LE, Franke L, Raychaudhuri S, Ellinghaus E, Boberg KM, Melum E, Schrumpf E, Bergquist A, Bjornsson E, Porte RJ, Weismüller TJ, Wedemeyer J, Schramm C, Sterneck M, et al. Three Genetic Susceptibility Loci Indicate a Role for IL2, REL and CARD9 in Primary Sclerosing Cholangitis Gastroenterology. 140: S-906. DOI: 10.1016/S0016-5085(11)63761-X |
0.598 |
|
| 2010 |
Franke A, McGovern DP, Barrett JC, Wang K, Radford-Smith GL, Ahmad T, Lees CW, Balschun T, Lee J, Roberts R, Anderson CA, Bis JC, Bumpstead S, Ellinghaus D, Festen EM, ... ... Raychaudhuri S, et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nature Genetics. 42: 1118-25. PMID 21102463 DOI: 10.1038/Ng.717 |
0.645 |
|
| 2010 |
Speliotes EK, Willer CJ, Berndt SI, Monda KL, Thorleifsson G, Jackson AU, Lango Allen H, Lindgren CM, Luan J, Mägi R, Randall JC, Vedantam S, Winkler TW, Qi L, Workalemahu T, ... ... Raychaudhuri S, et al. Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. Nature Genetics. 42: 937-48. PMID 20935630 DOI: 10.1038/Ng.686 |
0.356 |
|
| 2010 |
Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F, Willer CJ, Jackson AU, Vedantam S, Raychaudhuri S, Ferreira T, Wood AR, Weyant RJ, Segrè AV, Speliotes EK, et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature. 467: 832-8. PMID 20881960 DOI: 10.1038/Nature09410 |
0.454 |
|
| 2010 |
Raychaudhuri S, Korn JM, McCarroll SA, Altshuler D, Sklar P, Purcell S, Daly MJ. Accurately assessing the risk of schizophrenia conferred by rare copy-number variation affecting genes with brain function. Plos Genetics. 6: e1001097. PMID 20838587 DOI: 10.1371/Journal.Pgen.1001097 |
0.475 |
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| 2010 |
Raychaudhuri S, Ripke S, Li M, Neale BM, Fagerness J, Reynolds R, Sobrin L, Swaroop A, Abecasis G, Seddon JM, Daly MJ. Associations of CFHR1-CFHR3 deletion and a CFH SNP to age-related macular degeneration are not independent. Nature Genetics. 42: 553-5; author reply . PMID 20581873 DOI: 10.1038/Ng0710-553 |
0.438 |
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| 2010 |
Voight BF, Scott LJ, Steinthorsdottir V, Morris AP, Dina C, Welch RP, Zeggini E, Huth C, Aulchenko YS, Thorleifsson G, McCulloch LJ, Ferreira T, Grallert H, Amin N, Wu G, ... ... Raychaudhuri S, et al. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nature Genetics. 42: 579-89. PMID 20581827 DOI: 10.1038/Ng.609 |
0.606 |
|
| 2010 |
Plenge RM, Raychaudhuri S. Leveraging human genetics to develop future therapeutic strategies in rheumatoid arthritis. Rheumatic Diseases Clinics of North America. 36: 259-70. PMID 20510233 DOI: 10.1016/J.Rdc.2010.03.002 |
0.387 |
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| 2010 |
Stahl EA, Raychaudhuri S, Remmers EF, Xie G, Eyre S, Thomson BP, Li Y, Kurreeman FA, Zhernakova A, Hinks A, Guiducci C, Chen R, Alfredsson L, Amos CI, Ardlie KG, et al. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. Nature Genetics. 42: 508-14. PMID 20453842 DOI: 10.1038/Ng.582 |
0.59 |
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| 2010 |
Neale BM, Fagerness J, Reynolds R, Sobrin L, Parker M, Raychaudhuri S, Tan PL, Oh EC, Merriam JE, Souied E, Bernstein PS, Li B, Frederick JM, Zhang K, Brantley MA, et al. Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC). Proceedings of the National Academy of Sciences of the United States of America. 107: 7395-400. PMID 20385826 DOI: 10.1073/Pnas.0912019107 |
0.517 |
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| 2010 |
Cui J, Saevarsdottir S, Thomson B, Padyukov L, van der Helm-van Mil AH, Nititham J, Hughes LB, de Vries N, Raychaudhuri S, Alfredsson L, Askling J, Wedrén S, Ding B, Guiducci C, Wolbink GJ, et al. Rheumatoid arthritis risk allele PTPRC is also associated with response to anti-tumor necrosis factor alpha therapy. Arthritis and Rheumatism. 62: 1849-61. PMID 20309874 DOI: 10.1002/Art.27457 |
0.335 |
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| 2010 |
Beroukhim R, Mermel CH, Porter D, Wei G, Raychaudhuri S, Donovan J, Barretina J, Boehm JS, Dobson J, Urashima M, Mc Henry KT, Pinchback RM, Ligon AH, Cho YJ, Haery L, et al. The landscape of somatic copy-number alteration across human cancers. Nature. 463: 899-905. PMID 20164920 DOI: 10.1038/Nature08822 |
0.566 |
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| 2010 |
Raychaudhuri S. Recent advances in the genetics of rheumatoid arthritis. Current Opinion in Rheumatology. 22: 109-18. PMID 20075733 DOI: 10.1097/Bor.0B013E328336474D |
0.394 |
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| 2010 |
Rossin E, Cotsapas C, Raychaudhuri S, Lage K, Xavier R, Daly M. The Use of Protein-protein Interaction in Loci Associated to Crohn's and Rheumatoid Arthritis Reveals Evidence of Risk Spread Across Functional Networks Clinical Immunology. 135: S119. DOI: 10.1016/J.Clim.2010.03.356 |
0.479 |
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| 2009 |
Raychaudhuri S, Thomson BP, Remmers EF, Eyre S, Hinks A, Guiducci C, Catanese JJ, Xie G, Stahl EA, Chen R, Alfredsson L, Amos CI, Ardlie KG, Barton A, et al. Genetic variants at CD28, PRDM1 and CD2/CD58 are associated with rheumatoid arthritis risk. Nature Genetics. 41: 1313-8. PMID 19898481 DOI: 10.1038/Ng.479 |
0.518 |
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| 2009 |
van der Linden MP, Feitsma AL, le Cessie S, Kern M, Olsson LM, Raychaudhuri S, Begovich AB, Chang M, Catanese JJ, Kurreeman FA, van Nies J, van der Heijde DM, Gregersen PK, Huizinga TW, Toes RE, et al. Association of a single-nucleotide polymorphism in CD40 with the rate of joint destruction in rheumatoid arthritis. Arthritis and Rheumatism. 60: 2242-7. PMID 19644859 DOI: 10.1002/Art.24721 |
0.458 |
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| 2009 |
Raychaudhuri S, Plenge RM, Rossin EJ, Ng AC, Purcell SM, Sklar P, Scolnick EM, Xavier RJ, Altshuler D, Daly MJ. Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. Plos Genetics. 5: e1000534. PMID 19557189 DOI: 10.1371/Journal.Pgen.1000534 |
0.558 |
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| 2009 |
De Jager PL, Jia X, Wang J, de Bakker PI, Ottoboni L, Aggarwal NT, Piccio L, Raychaudhuri S, Tran D, Aubin C, Briskin R, Romano S, Baranzini SE, McCauley JL, et al. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. Nature Genetics. 41: 776-82. PMID 19525953 DOI: 10.1038/Ng.401 |
0.495 |
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| 2009 |
Kraff P, Raychaudhuri S. Complex diseases, complex genes Epidemiology. 20: 508-511. PMID 19525687 DOI: 10.1097/Ede.0B013E3181A93B98 |
0.417 |
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| 2009 |
Lee YC, Raychaudhuri S, Cui J, De Vivo I, Ding B, Alfredsson L, Padyukov L, Costenbader KH, Seielstad M, Graham RR, Klareskog L, Gregersen PK, Plenge RM, Karlson EW. The PRL -1149 G/T polymorphism and rheumatoid arthritis susceptibility. Arthritis and Rheumatism. 60: 1250-4. PMID 19404952 DOI: 10.1002/Art.24468 |
0.397 |
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| 2008 |
de Bakker PI, Ferreira MA, Jia X, Neale BM, Raychaudhuri S, Voight BF. Practical aspects of imputation-driven meta-analysis of genome-wide association studies. Human Molecular Genetics. 17: R122-8. PMID 18852200 DOI: 10.1093/Hmg/Ddn288 |
0.387 |
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| 2008 |
Raychaudhuri S, Remmers EF, Lee AT, Hackett R, Guiducci C, Burtt NP, Gianniny L, Korman BD, Padyukov L, Kurreeman FA, Chang M, Catanese JJ, Ding B, Wong S, van der Helm-van Mil AH, et al. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. Nature Genetics. 40: 1216-23. PMID 18794853 DOI: 10.1038/Ng.233 |
0.533 |
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| 2003 |
Denko NC, Fontana LA, Hudson KM, Sutphin PD, Raychaudhuri S, Altman R, Giaccia AJ. Investigating hypoxic tumor physiology through gene expression patterns. Oncogene. 22: 5907-14. PMID 12947397 DOI: 10.1038/Sj.Onc.1206703 |
0.486 |
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| 2003 |
Raychaudhuri S, Chang JT, Imam F, Altman RB. The computational analysis of scientific literature to define and recognize gene expression clusters. Nucleic Acids Research. 31: 4553-60. PMID 12888516 DOI: 10.1093/Nar/Gkg636 |
0.614 |
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| 2003 |
Raychaudhuri S, Altman RB. A literature-based method for assessing the functional coherence of a gene group. Bioinformatics (Oxford, England). 19: 396-401. PMID 12584126 DOI: 10.1093/Bioinformatics/Btg002 |
0.463 |
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| 2003 |
Raychaudhuri S, Schütze H, Altman RB. Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data Machine Learning. 52: 119-145. DOI: 10.1023/A:1023901610396 |
0.483 |
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| 2002 |
Raychaudhuri S, Schütze H, Altman RB. Using text analysis to identify functionally coherent gene groups. Genome Research. 12: 1582-90. PMID 12368251 DOI: 10.1101/Gr.116402 |
0.484 |
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| 2002 |
Kivi M, Liu X, Raychaudhuri S, Altman RB, Small PM. Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis. Journal of Clinical Microbiology. 40: 2192-8. PMID 12037086 DOI: 10.1128/Jcm.40.6.2192-2198.2002 |
0.491 |
|
| 2002 |
Raychaudhuri S, Chang JT, Sutphin PD, Altman RB. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Research. 12: 203-14. PMID 11779846 DOI: 10.1101/Gr.199701 |
0.611 |
|
| 2001 |
Altman RB, Raychaudhuri S. Whole-genome expression analysis: challenges beyond clustering. Current Opinion in Structural Biology. 11: 340-7. PMID 11406385 DOI: 10.1016/S0959-440X(00)00212-8 |
0.499 |
|
| 2001 |
Raychaudhuri S, Sutphin PD, Chang JT, Altman RB. Basic microarray analysis: grouping and feature reduction. Trends in Biotechnology. 19: 189-93. PMID 11301132 DOI: 10.1016/S0167-7799(01)01599-2 |
0.6 |
|
| 2001 |
Chang JT, Raychaudhuri S, Altman RB. Including biological literature improves homology search. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 374-83. PMID 11262956 |
0.527 |
|
| 2001 |
Sutphin PD, Raychaudhuri S, Denko NC, Altman RB, Giaccia AJ. Application of supervised machine learning to identify genes associated with the hypoxia response Nature Genetics. 27: 90-90. DOI: 10.1038/87320 |
0.442 |
|
| 2000 |
Raychaudhuri S, Stuart JM, Liu X, Small PM, Altman RB. Pattern recognition of genomic features with microarrays: site typing of Mycobacterium tuberculosis strains. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 8: 286-95. PMID 10977090 |
0.361 |
|
| 2000 |
Raychaudhuri S, Stuart JM, Altman RB. Principal components analysis to summarize microarray experiments: application to sporulation time series. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 455-66. PMID 10902193 |
0.393 |
|
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