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Yasuo Yoshikuni - Publications

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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sanford PA, Blaby I, Yoshikuni Y, Woolston BM. An efficient cre-based workflow for genomic integration and expression of large biosynthetic pathways in Eubacterium limosum. Biotechnology and Bioengineering. PMID 38956879 DOI: 10.1002/bit.28796  0.326
2020 Arakaki A, Goto M, Maruyama M, Yoda T, Tanaka M, Yamagishi A, Yoshikuni Y, Matsunaga T. Restoration and Modification of Magnetosome Biosynthesis by Internal Gene Acquisition in a Magnetotactic Bacterium. Biotechnology Journal. e2000278. PMID 32846013 DOI: 10.1002/Biot.202000278  0.349
2020 Ke J, Wang B, Yoshikuni Y. Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture. Trends in Biotechnology. PMID 32800605 DOI: 10.1016/J.Tibtech.2020.07.008  0.307
2020 Wang B, Zhao Z, Jabusch LK, Chiniquy DM, Ono K, Conway JM, Zhang Z, Wang G, Robinson D, Cheng JF, Dangl JL, Northen TR, Yoshikuni Y. CRAGE-Duet facilitates modular assembly of biological systems for studying plant-microbe interactions. Acs Synthetic Biology. PMID 32786359 DOI: 10.1021/Acssynbio.0C00280  0.361
2020 Bowman EK, Deaner M, Cheng JF, Evans R, Oberortner E, Yoshikuni Y, Alper HS. Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proceedings of the National Academy of Sciences of the United States of America. PMID 32690674 DOI: 10.1073/Pnas.2007413117  0.314
2020 Cao M, Fatma Z, Song X, Hsieh PH, Tran VG, Lyon WL, Sayadi M, Shao Z, Yoshikuni Y, Zhao H. A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metabolic Engineering. PMID 32007615 DOI: 10.1016/J.Ymben.2020.01.005  0.354
2019 Doud DFR, Bowers RM, Schulz F, De Raad M, Deng K, Tarver A, Glasgow E, Vander Meulen K, Fox B, Deutsch S, Yoshikuni Y, Northen T, Hedlund BP, Singer SW, Ivanova N, et al. Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The Isme Journal. PMID 31754206 DOI: 10.1038/S41396-019-0557-Y  0.342
2019 Ke J, Yoshikuni Y. Multi-chassis engineering for heterologous production of microbial natural products. Current Opinion in Biotechnology. 62: 88-97. PMID 31639618 DOI: 10.1016/J.Copbio.2019.09.005  0.356
2019 Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, ... ... Yoshikuni Y, et al. CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature Microbiology. PMID 31611640 DOI: 10.1038/S41564-019-0573-8  0.39
2019 Shulse CN, Chovatia M, Agosto C, Wang G, Hamilton M, Deutsch S, Yoshikuni Y, Blow MJ. Engineered root bacteria release plant-available phosphate from phytate. Applied and Environmental Microbiology. PMID 31285192 DOI: 10.1128/Aem.01210-19  0.344
2019 Stoffel GMM, Saez DA, DeMirci H, Vögeli B, Rao Y, Zarzycki J, Yoshikuni Y, Wakatsuki S, Vöhringer-Martinez E, Erb TJ. Four amino acids define the CO binding pocket of enoyl-CoA carboxylases/reductases. Proceedings of the National Academy of Sciences of the United States of America. PMID 31243147 DOI: 10.2210/Pdb6Owe/Pdb  0.327
2019 Huang J, Yu Z, Groom J, Cheng JF, Tarver A, Yoshikuni Y, Chistoserdova L. Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes. The Isme Journal. PMID 30952993 DOI: 10.1038/S41396-019-0414-Z  0.364
2019 Ke J, Yoshikuni Y. Pathway and Gene Discovery from Natural Hosts and Organisms. Methods in Molecular Biology (Clifton, N.J.). 1927: 1-9. PMID 30788781 DOI: 10.1007/978-1-4939-9142-6_1  0.384
2019 Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New voyages to explore the natural product galaxy. Journal of Industrial Microbiology & Biotechnology. PMID 30610411 DOI: 10.1007/S10295-018-02122-W  0.33
2019 Hussey S, Grima-Pettenati J, Myburg AA, Mizrachi E, Brady SM, Yoshikuni Y, Deutsch S. A standardized synthetic Eucalyptus transcription factor and promoter panel for re-engineering secondary cell wall regulation in biomass and bioenergy crops. Acs Synthetic Biology. PMID 30605615 DOI: 10.1021/Acssynbio.8B00440  0.307
2018 Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, ... ... Yoshikuni Y, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/S10295-018-2025-5  0.321
2017 Cole BJ, Feltcher ME, Waters RJ, Wetmore KM, Mucyn TS, Ryan EM, Wang G, Ul-Hasan S, McDonald M, Yoshikuni Y, Malmstrom RR, Deutschbauer AM, Dangl JL, Visel A. Genome-wide identification of bacterial plant colonization genes. Plos Biology. 15: e2002860. PMID 28938018 DOI: 10.1371/Journal.Pbio.2002860  0.348
2017 Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/Nbt.3886  0.31
2015 Siegel JB, Smith AL, Poust S, Wargacki AJ, Bar-Even A, Louw C, Shen BW, Eiben CB, Tran HM, Noor E, Gallaher JL, Bale J, Yoshikuni Y, Gelb MH, Keasling JD, et al. Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences of the United States of America. 112: 3704-9. PMID 25775555 DOI: 10.1073/Pnas.1500545112  0.555
2014 Santos CN, Yoshikuni Y. Engineering complex biological systems in bacteria through recombinase-assisted genome engineering. Nature Protocols. 9: 1320-36. PMID 24833171 DOI: 10.1038/Nprot.2014.084  0.379
2014 Enquist-Newman M, Faust AM, Bravo DD, Santos CN, Raisner RM, Hanel A, Sarvabhowman P, Le C, Regitsky DD, Cooper SR, Peereboom L, Clark A, Martinez Y, Goldsmith J, Cho MY, ... ... Yoshikuni Y, et al. Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform. Nature. 505: 239-43. PMID 24291791 DOI: 10.1038/Nature12771  0.355
2013 Santos CN, Regitsky DD, Yoshikuni Y. Implementation of stable and complex biological systems through recombinase-assisted genome engineering. Nature Communications. 4: 2503. PMID 24056574 DOI: 10.1038/Ncomms3503  0.388
2012 Wargacki AJ, Leonard E, Win MN, Regitsky DD, Santos CN, Kim PB, Cooper SR, Raisner RM, Herman A, Sivitz AB, Lakshmanaswamy A, Kashiyama Y, Baker D, Yoshikuni Y. An engineered microbial platform for direct biofuel production from brown macroalgae. Science (New York, N.Y.). 335: 308-13. PMID 22267807 DOI: 10.1126/Science.1214547  0.448
2009 Dietrich JA, Yoshikuni Y, Fisher KJ, Woolard FX, Ockey D, McPhee DJ, Renninger NS, Chang MC, Baker D, Keasling JD. A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3). Acs Chemical Biology. 4: 261-7. PMID 19271725 DOI: 10.1021/Cb900006H  0.452
2008 Yoshikuni Y, Dietrich JA, Nowroozi FF, Babbitt PC, Keasling JD. Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways. Chemistry & Biology. 15: 607-18. PMID 18559271 DOI: 10.1016/J.Chembiol.2008.05.006  0.381
2007 Yoshikuni Y, Keasling JD. Pathway engineering by designed divergent evolution. Current Opinion in Chemical Biology. 11: 233-9. PMID 17353138 DOI: 10.1016/J.Cbpa.2007.02.033  0.362
2006 Yoshikuni Y, Ferrin TE, Keasling JD. Designed divergent evolution of enzyme function. Nature. 440: 1078-82. PMID 16495946 DOI: 10.1038/Nature04607  0.361
2006 Yoshikuni Y, Martin VJ, Ferrin TE, Keasling JD. Engineering cotton (+)-delta-cadinene synthase to an altered function: germacrene D-4-ol synthase. Chemistry & Biology. 13: 91-8. PMID 16426975 DOI: 10.1016/J.Chembiol.2005.10.016  0.306
2004 Reiling KK, Yoshikuni Y, Martin VJ, Newman J, Bohlmann J, Keasling JD. Mono and diterpene production in Escherichia coli. Biotechnology and Bioengineering. 87: 200-12. PMID 15236249 DOI: 10.1002/Bit.20128  0.349
2001 Martin VJ, Yoshikuni Y, Keasling JD. The in vivo synthesis of plant sesquiterpenes by Escherichia coli. Biotechnology and Bioengineering. 75: 497-503. PMID 11745124 DOI: 10.1002/Bit.10037  0.352
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