Jennifer F. Biddle, Ph.D. - Publications

2006 Pennsylvania State University, State College, PA, United States 
Microbiology Biology, Biogeochemistry, Physical Oceanography, Oceanography Biology

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Zhao R, Biddle JF, Jørgensen SL. Introducing Candidatus Bathyanammoxibiaceae, a family of bacteria with the anammox potential present in both marine and terrestrial environments. Isme Communications. 2: 42. PMID 37938673 DOI: 10.1038/s43705-022-00125-4  0.371
2022 Zhao R, Farag IF, Jørgensen SL, Biddle JF. Occurrence, Diversity, and Genomes of " Patescibacteria" along the Early Diagenesis of Marine Sediments. Applied and Environmental Microbiology. e0140922. PMID 36468881 DOI: 10.1128/aem.01409-22  0.539
2021 Zhao R, Biddle JF. Helarchaeota and co-occurring sulfate-reducing bacteria in subseafloor sediments from the Costa Rica Margin. Isme Communications. 1: 25. PMID 36737514 DOI: 10.1038/s43705-021-00027-x  0.425
2021 Beckmann S, Farag IF, Zhao R, Christman GD, Prouty NG, Biddle JF. Expanding the repertoire of electron acceptors for the anaerobic oxidation of methane in carbonates in the Atlantic and Pacific Ocean. The Isme Journal. PMID 33712702 DOI: 10.1038/s41396-021-00918-w  0.302
2021 Farag IF, Zhao R, Biddle JF. "Sifarchaeota" a novel Asgard phylum from Costa Rica sediment capable of polysaccharide degradation and anaerobic methylotrophy. Applied and Environmental Microbiology. PMID 33608286 DOI: 10.1128/AEM.02584-20  0.413
2020 Zhao R, Mogollón JM, Abby SS, Schleper C, Biddle JF, Roerdink DL, Thorseth IH, Jørgensen SL. Geochemical transition zone powering microbial growth in subsurface sediments. Proceedings of the National Academy of Sciences of the United States of America. PMID 33288718 DOI: 10.1073/pnas.2005917117  0.435
2020 Christman GD, León-Zayas RI, Summers ZM, Biddle JF. Methanogens Within a High Salinity Oil Reservoir From the Gulf of Mexico. Frontiers in Microbiology. 11: 570714. PMID 33042074 DOI: 10.3389/Fmicb.2020.570714  0.375
2020 León-Zayas R, McCargar M, Drew JA, Biddle JF. Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations. Peerj. 8: e10026. PMID 33005496 DOI: 10.7717/Peerj.10026  0.537
2020 Christman GD, León-Zayas RI, Zhao R, Summers ZM, Biddle JF. Novel clostridial lineages recovered from metagenomes of a hot oil reservoir. Scientific Reports. 10: 8048. PMID 32415178 DOI: 10.1038/S41598-020-64904-6  0.36
2020 Zhao R, Summers ZM, Christman GD, Yoshimura KM, Biddle JF. Metagenomic views of microbial dynamics influenced by hydrocarbon seepage in sediments of the Gulf of Mexico. Scientific Reports. 10: 5772. PMID 32238866 DOI: 10.1038/S41598-020-62840-Z  0.571
2020 Farag IF, Biddle JF, Zhao R, Martino AJ, House CH, León-Zayas RI. Metabolic potentials of archaeal lineages resolved from metagenomes of deep Costa Rica sediments. The Isme Journal. PMID 32066876 DOI: 10.1038/S41396-020-0615-5  0.48
2020 Yoshimura KM, Todorova S, Biddle JF. Mercury geochemistry and microbial diversity in meromictic Glacier Lake, Jamesville NY. Environmental Microbiology Reports. PMID 32036624 DOI: 10.1111/1758-2229.12823  0.446
2020 Prouty NG, Campbell PL, Close HG, Biddle JF, Beckmann S. Molecular indicators of methane metabolisms at cold seeps along the United States Atlantic Margin Chemical Geology. 543: 119603. DOI: 10.1016/J.Chemgeo.2020.119603  0.442
2019 Rambo IM, Marsh A, Biddle JF. Cytosine Methylation Within Marine Sediment Microbial Communities: Potential Epigenetic Adaptation to the Environment. Frontiers in Microbiology. 10: 1291. PMID 31244806 DOI: 10.3389/Fmicb.2019.01291  0.471
2019 Payler SJ, Biddle JF, Sherwood Lollar B, Fox-Powell MG, Edwards T, Ngwenya BT, Paling SM, Cockell CS. An Ionic Limit to Life in the Deep Subsurface. Frontiers in Microbiology. 10: 426. PMID 30915051 DOI: 10.3389/Fmicb.2019.00426  0.45
2019 Martino A, Rhodes ME, León-Zayas R, Valente IE, Biddle JF, House CH. Microbial Diversity in Sub-Seafloor Sediments from the Costa Rica Margin Geosciences. 9: 218. DOI: 10.3390/GEOSCIENCES9050218  0.497
2018 Seyler LM, McGuinness LR, Gilbert JA, Biddle JF, Gong D, Kerkhof LJ. Discerning autotrophy, mixotrophy, and heterotrophy in marine TACK archaea from the North Atlantic. Fems Microbiology Ecology. PMID 29390107 DOI: 10.1093/Femsec/Fiy014  0.462
2018 Yoshimura KM, York J, Biddle JF. Impacts of Salinity and Oxygen on Particle-Associated Microbial Communities in the Broadkill River, Lewes DE Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00100  0.408
2017 León-Zayas R, Peoples L, Biddle JF, Podell S, Novotny M, Cameron J, Lasken RS, Bartlett DH. The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the Candidate Superphylum Parcubacteria (OD1). Environmental Microbiology. PMID 28474498 DOI: 10.1111/1462-2920.13789  0.464
2017 Flood RD, Violante RA, Gorgas T, Schwarz E, Grützner J, Uenzelmann-Neben G, Hernández-Molina FJ, Biddle J, St-Onge G. IODP workshop: developing scientific drilling proposals for the Argentina Passive Volcanic Continental Margin (APVCM) – basin evolution, deep biosphere, hydrates, sediment dynamics and ocean evolution Scientific Drilling. 22: 49-61. DOI: 10.5194/Sd-22-49-2017  0.491
2016 Russell JA, León-Zayas R, Wrighton K, Biddle JF. Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria. Frontiers in Microbiology. 7: 678. PMID 27242705 DOI: 10.3389/Fmicb.2016.00678  0.558
2016 Orsi WD, Jørgensen BB, Biddle JF. Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor. Environmental Microbiology Reports. PMID 26991974 DOI: 10.1111/1758-2229.12387  0.454
2016 Teske A, de Beer D, McKay LJ, Tivey MK, Biddle JF, Hoer D, Lloyd KG, Lever MA, Røy H, Albert DB, Mendlovitz HP, MacGregor BJ. The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation. Frontiers in Microbiology. 7: 75. PMID 26925032 DOI: 10.3389/Fmicb.2016.00075  0.441
2016 Dowell F, Cardman Z, Dasarathy S, Kellermann MY, Lipp JS, Ruff SE, Biddle JF, McKay LJ, MacGregor BJ, Lloyd KG, Albert DB, Mendlovitz H, Hinrichs KU, Teske A. Microbial Communities in Methane- and Short Chain Alkane-Rich Hydrothermal Sediments of Guaymas Basin. Frontiers in Microbiology. 7: 17. PMID 26858698 DOI: 10.3389/Fmicb.2016.00017  0.544
2016 Payler SJ, Biddle JF, Coates AJ, Cousins CR, Cross RE, Cullen DC, Downs MT, Direito SOL, Edwards T, Gray AL, Genis J, Gunn M, Hansford GM, Harkness P, Holt J, et al. Planetary science and exploration in the deep subsurface: results from the MINAR Program, Boulby Mine, UK International Journal of Astrobiology. 1-16. DOI: 10.1017/S1473550416000045  0.342
2015 Gutierrez T, Biddle JF, Teske A, Aitken MD. Cultivation-dependent and cultivation-independent characterization of hydrocarbon-degrading bacteria in Guaymas Basin sediments. Frontiers in Microbiology. 6: 695. PMID 26217326 DOI: 10.3389/Fmicb.2015.00695  0.562
2015 Ruff SE, Biddle JF, Teske AP, Knittel K, Boetius A, Ramette A. Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences of the United States of America. 112: 4015-20. PMID 25775520 DOI: 10.1073/Pnas.1421865112  0.532
2015 Lazar CS, Biddle JF, Meador TB, Blair N, Hinrichs KU, Teske AP. Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA). Environmental Microbiology. 17: 2228-38. PMID 25331558 DOI: 10.1111/1462-2920.12659  0.551
2014 Wilkins MJ, Daly RA, Mouser PJ, Trexler R, Sharma S, Cole DR, Wrighton KC, Biddle JF, Denis EH, Fredrickson JK, Kieft TL, Onstott TC, Peterson L, Pfiffner SM, Phelps TJ, et al. Trends and future challenges in sampling the deep terrestrial biosphere. Frontiers in Microbiology. 5: 481. PMID 25309520 DOI: 10.3389/Fmicb.2014.00481  0.385
2014 Chan OW, Bugler-Lacap DC, Biddle JF, Lim DS, McKay CP, Pointing SB. Phylogenetic diversity of a microbialite reef in a cold alkaline freshwater lake. Canadian Journal of Microbiology. 60: 391-8. PMID 24861562 DOI: 10.1139/Cjm-2014-0024  0.507
2014 Russell JA, Brady AL, Cardman Z, Slater GF, Lim DS, Biddle JF. Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada. Geobiology. 12: 250-64. PMID 24636451 DOI: 10.1111/Gbi.12082  0.497
2014 Flood BE, Bailey JV, Biddle JF. Horizontal gene transfer and the rock record: comparative genomics of phylogenetically distant bacteria that induce wrinkle structure formation in modern sediments. Geobiology. 12: 119-32. PMID 24382125 DOI: 10.1111/Gbi.12072  0.502
2014 Teske A, Biddle JF, Lever MA. Genetic Evidence of Subseafloor Microbial Communities Developments in Marine Geology. 7: 85-125. DOI: 10.1016/B978-0-444-62617-2.00004-9  0.385
2013 MacGregor BJ, Biddle JF, Harbort C, Matthysse AG, Teske A. Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament. Marine Genomics. 11: 53-65. PMID 24012537 DOI: 10.1016/J.Margen.2013.08.001  0.419
2013 Orcutt BN, Larowe DE, Biddle JF, Colwell FS, Glazer BT, Reese BK, Kirkpatrick JB, Lapham LL, Mills HJ, Sylvan JB, Wankel SD, Wheat CG. Microbial activity in the marine deep biosphere: progress and prospects. Frontiers in Microbiology. 4: 189. PMID 23874326 DOI: 10.3389/Fmicb.2013.00189  0.464
2013 Orsi WD, Edgcomb VP, Christman GD, Biddle JF. Gene expression in the deep biosphere. Nature. 499: 205-8. PMID 23760485 DOI: 10.1038/Nature12230  0.472
2013 Teske A, Biddle JF, Edgcomb VP, Schippers A. Deep subsurface microbiology: a guide to the research topic papers. Frontiers in Microbiology. 4: 122. PMID 23720656 DOI: 10.3389/Fmicb.2013.00122  0.517
2013 MacGregor BJ, Biddle JF, Teske A. Mobile elements in a single-filament orange Guaymas Basin Beggiatoa ("Candidatus Maribeggiatoa") sp. draft genome: evidence for genetic exchange with cyanobacteria. Applied and Environmental Microbiology. 79: 3974-85. PMID 23603674 DOI: 10.1128/Aem.03821-12  0.406
2013 Orsi W, Biddle JF, Edgcomb V. Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces. Plos One. 8: e56335. PMID 23418556 DOI: 10.1371/Journal.Pone.0056335  0.567
2013 Biddle JF. Microbial eukaryotes: extending observations north. Frontiers in Microbiology. 4: 10. PMID 23386846 DOI: 10.3389/Fmicb.2013.00010  0.39
2013 MacGregor BJ, Biddle JF, Siebert JR, Staunton E, Hegg EL, Matthysse AG, Teske A. Why orange Guaymas Basin Beggiatoa spp. are orange: single-filament-genome-enabled identification of an abundant octaheme cytochrome with hydroxylamine oxidase, hydrazine oxidase, and nitrite reductase activities. Applied and Environmental Microbiology. 79: 1183-90. PMID 23220958 DOI: 10.1128/Aem.02538-12  0.424
2013 Burgaud G, Woehlke S, Rédou V, Orsi W, Beaudoin D, Barbier G, Biddle JF, Edgcomb VP. Deciphering the presence and activity of fungal communities in marine sediments using a model estuarine system Aquatic Microbial Ecology. 70: 45-62. DOI: 10.3354/Ame01638  0.557
2012 Martino AJ, Rhodes ME, Biddle JF, Brandt LD, Tomsho LP, House CH. Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples. Frontiers in Microbiology. 3: 17. PMID 22319519 DOI: 10.3389/Fmicb.2012.00017  0.376
2012 Biddle JF, Cardman Z, Mendlovitz H, Albert DB, Lloyd KG, Boetius A, Teske A. Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. The Isme Journal. 6: 1018-31. PMID 22094346 DOI: 10.1038/Ismej.2011.164  0.506
2011 Biddle JF, Sylvan JB, Brazelton WJ, Tully BJ, Edwards KJ, Moyer CL, Heidelberg JF, Nelson WC. Prospects for the study of evolution in the deep biosphere. Frontiers in Microbiology. 2: 285. PMID 22319515 DOI: 10.3389/Fmicb.2011.00285  0.387
2011 Biddle JF, White JR, Teske AP, House CH. Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes. The Isme Journal. 5: 1038-47. PMID 21209666 DOI: 10.1038/Ismej.2010.199  0.601
2011 Edgcomb VP, Beaudoin D, Gast R, Biddle JF, Teske A. Marine subsurface eukaryotes: the fungal majority. Environmental Microbiology. 13: 172-83. PMID 21199255 DOI: 10.1111/J.1462-2920.2010.02318.X  0.568
2010 Lloyd KG, Albert DB, Biddle JF, Chanton JP, Pizarro O, Teske A. Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep Plos One. 5. PMID 20090951 DOI: 10.1371/Journal.Pone.0008738  0.531
2010 Lin YS, Biddle JF, Lipp JS, Orcutt BN, Holler T, Teske A, Hinrichs KU. Effect of storage conditions on archaeal and bacterial communities in subsurface marine sediments Geomicrobiology Journal. 27: 261-272. DOI: 10.1080/01490450903410423  0.49
2008 Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH. Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment Proceedings of the National Academy of Sciences of the United States of America. 105: 10583-10588. PMID 18650394 DOI: 10.1073/Pnas.0709942105  0.724
2006 Biddle JF, Lipp JS, Lever MA, Lloyd KG, Sørensen KB, Anderson R, Fredricks HF, Elvert M, Kelly TJ, Schrag DP, Sogin ML, Brenchley JE, Teske A, House CH, Hinrichs KU. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proceedings of the National Academy of Sciences of the United States of America. 103: 3846-51. PMID 16505362 DOI: 10.1073/Pnas.0600035103  0.667
2006 Biddle JF, House CH, Brenchley JE. Enrichment and cultivation of microorganisms from sediment from the slope of the Peru Trench (ODP Site 1230) Proceedings of the Ocean Drilling Program: Scientific Results. 201.  0.651
2005 Biddle JF, House CH, Brenchley JE. Microbial stratification in deeply buried marine sediment reflects changes in sulfate/methane profiles Geobiology. 3: 287-295. DOI: 10.1111/J.1472-4669.2006.00062.X  0.695
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