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Christopher V. Rao, Ph.D. - Publications

Affiliations: 
2000 University of Wisconsin, Madison, Madison, WI 
Area:
Chemical Engineering, System Science Engineering
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Koh HG, Yook S, Oh H, Rao CV, Jin YS. Toward rapid and efficient utilization of nonconventional substrates by nonconventional yeast strains. Current Opinion in Biotechnology. 85: 103059. PMID 38171048 DOI: 10.1016/j.copbio.2023.103059  0.462
2023 Jagtap SS, Liu J-J, Walukiewicz HE, Riley R, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin Y-S, ... Rao CV, et al. Draft genome sequence of NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements. e0043523. PMID 37982613 DOI: 10.1128/MRA.00435-23  0.558
2023 Jagtap SS, Liu J-J, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, ... ... Rao CV, et al. Near-complete genome sequence of NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements. e0042623. PMID 37906027 DOI: 10.1128/MRA.00426-23  0.561
2023 Koh HG, Kim J, Rao CV, Park SJ, Jin YS. Construction of a Compact Array of Microplasma Jet Devices and Its Application for Random Mutagenesis of . Acs Synthetic Biology. PMID 37864563 DOI: 10.1021/acssynbio.3c00443  0.385
2022 Deewan A, Liu JJ, Jagtap SS, Yun EJ, Walukiewicz H, Jin YS, Rao CV. System analysis of Lipomyces starkeyi during growth on various plant-based sugars. Applied Microbiology and Biotechnology. PMID 35906440 DOI: 10.1007/s00253-022-12084-w  0.587
2022 Tan LR, Liu JJ, Deewan A, Lee JW, Xia PF, Rao CV, Jin YS, Wang SG. Genome-wide transcriptional regulation in Saccharomyces cerevisiae in response to carbon dioxide. Fems Yeast Research. PMID 35640892 DOI: 10.1093/femsyr/foac032  0.568
2022 Jagtap SS, Liu JJ, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, ... ... Rao CV, et al. Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates. Microbiology Resource Announcements. e0005022. PMID 35442079 DOI: 10.1128/mra.00050-22  0.555
2021 Jagtap SS, Bedekar AA, Singh V, Jin YS, Rao CV. Metabolic engineering of the oleaginous yeast Yarrowia lipolytica PO1f for production of erythritol from glycerol. Biotechnology For Biofuels. 14: 188. PMID 34563235 DOI: 10.1186/s13068-021-02039-0  0.416
2021 Jagtap SS, Deewan A, Liu JJ, Walukiewicz HE, Yun EJ, Jin YS, Rao CV. Integrating transcriptomic and metabolomic analysis of the oleaginous yeast Rhodosporidium toruloides IFO0880 during growth under different carbon sources. Applied Microbiology and Biotechnology. PMID 34491401 DOI: 10.1007/s00253-021-11549-8  0.583
2021 Kuanyshev N, Deewan A, Jagtap SS, Liu J, Selvam B, Chen LQ, Shukla D, Rao CV, Jin YS. Identification and analysis of sugar transporters capable of co-transporting glucose and xylose simultaneously. Biotechnology Journal. e2100238. PMID 34418308 DOI: 10.1002/biot.202100238  0.405
2021 Lee JW, Lee YG, Jin YS, Rao CV. Metabolic engineering of non-pathogenic microorganisms for 2,3-butanediol production. Applied Microbiology and Biotechnology. PMID 34287658 DOI: 10.1007/s00253-021-11436-2  0.449
2021 Liu JJ, Woodruff W, Deewan A, Jagtap SS, Yun EJ, Walukiewicz HE, Jin YS, Rao CV. Investigating the role of the transcriptional regulator Ure2 on the metabolism of Saccharomyces cerevisiae: a multi-omics approach. Applied Microbiology and Biotechnology. PMID 34152451 DOI: 10.1007/s00253-021-11394-9  0.607
2020 Lee JW, Yook S, Koh H, Rao CV, Jin YS. Engineering xylose metabolism in yeasts to produce biofuels and chemicals. Current Opinion in Biotechnology. 67: 15-25. PMID 33246131 DOI: 10.1016/j.copbio.2020.10.012  0.588
2020 Kuanyshev N, Rao CV, Dien B, Jin YS. Domesticating a food spoilage yeast into an organic acid-tolerant metabolic engineering host: Lactic acid production by engineered Zygosaccharomyces bailii. Biotechnology and Bioengineering. PMID 33030791 DOI: 10.1002/bit.27576  0.447
2019 Dinh HV, Suthers PF, Chan SHJ, Shen Y, Xiao T, Deewan A, Jagtap SS, Zhao H, Rao CV, Rabinowitz JD, Maranas CD. A comprehensive genome-scale model for IFO0880 accounting for functional genomics and phenotypic data. Metabolic Engineering Communications. 9: e00101. PMID 31720216 DOI: 10.1016/J.Mec.2019.E00101  0.341
2019 Jagtap SS, Bedekar AA, Liu JJ, Jin YS, Rao CV. Production of galactitol from galactose by the oleaginous yeast IFO0880. Biotechnology For Biofuels. 12: 250. PMID 31636709 DOI: 10.1186/S13068-019-1586-5  0.579
2019 Schilling B, Basisty N, Christensen DG, Sorensen D, Orr JS, Wolfe AJ, Rao CV. Global lysine acetylation in results from growth conditions that favor acetate fermentation. Journal of Bacteriology. PMID 30782634 DOI: 10.1128/Jb.00768-18  0.328
2018 Albanna A, Sim M, Hoskisson PA, Gillespie C, Rao CV, Aldridge PD. Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences. Scientific Reports. 8: 16705. PMID 30420601 DOI: 10.1038/S41598-018-35005-2  0.316
2018 Orr JS, Christensen DG, Wolfe AJ, Rao CV. Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the TCA cycle and the glyoxylate shunt. Journal of Bacteriology. PMID 30348831 DOI: 10.1128/Jb.00410-18  0.341
2018 Ammar EM, Wang X, Rao CV. Regulation of metabolism in Escherichia coli during growth on mixtures of the non-glucose sugars: arabinose, lactose, and xylose. Scientific Reports. 8: 609. PMID 29330542 DOI: 10.1038/S41598-017-18704-0  0.332
2017 Nakayasu ES, Burnet MC, Walukiewicz HE, Wilkins CS, Shukla AK, Brooks S, Plutz MJ, Lee BD, Schilling B, Wolfe AJ, Müller S, Kirby JR, Rao CV, Cort JR, Payne SH. Ancient Regulatory Role of Lysine Acetylation in Central Metabolism. Mbio. 8. PMID 29184018 DOI: 10.1128/Mbio.01894-17  0.308
2017 Badur AH, Plutz MJ, Yalamanchili G, Jagtap SS, Schweder T, Unfried F, Markert S, Polz MF, Hehemann JH, Rao CV. Exploiting Fine-scale Genetic and Physiological Variation of Closely Related Microbes to Reveal Unknown Enzyme Functions. The Journal of Biological Chemistry. PMID 28592491 DOI: 10.1074/Jbc.M117.787192  0.312
2016 Zhang S, Ito M, Skerker JM, Arkin AP, Rao CV. Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation. Applied Microbiology and Biotechnology. PMID 27678117 DOI: 10.1007/S00253-016-7815-Y  0.327
2016 Rutter CD, Rao CV. Production of 1-decanol by metabolically engineered Yarrowia lipolytica. Metabolic Engineering. PMID 27471068 DOI: 10.1016/J.Ymben.2016.07.011  0.343
2016 Zhou J, Wu K, Rao C. Evolutionary engineering of Geobacillus thermoglucosidasius for improved ethanol production. Biotechnology and Bioengineering. PMID 27002479 DOI: 10.1002/Bit.25983  0.556
2016 Liu JJ, Kong II, Zhang GC, Jayakody LN, Kim H, Xia PF, Kwak S, Sung BH, Sohn JH, Walukiewicz HE, Rao CV, Jin YS. Metabolic engineering of a probiotic Saccharomyces boulardii. Applied and Environmental Microbiology. PMID 26850302 DOI: 10.1128/Aem.00057-16  0.619
2015 Koirala S, Wang X, Rao CV. Reciprocal regulation of L-arabinose and D-xylose metabolism in Escherichia coli. Journal of Bacteriology. PMID 26527647 DOI: 10.1128/Jb.00709-15  0.301
2015 Zhang S, Skerker JM, Rutter CD, Maurer MJ, Arkin AP, Rao CV. Engineering Rhodosporidium toruloides for increased lipid production. Biotechnology and Bioengineering. PMID 26479039 DOI: 10.1002/Bit.25864  0.339
2015 Dunn KL, Rao CV. High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains of Zymomonas mobilis. Biotechnology and Bioengineering. PMID 25943255 DOI: 10.1002/Bit.25631  0.326
2015 Lane S, Zhang S, Wei N, Rao C, Jin YS. Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica. Biotechnology and Bioengineering. 112: 1012-22. PMID 25421388 DOI: 10.1002/Bit.25499  0.509
2014 Koirala S, Mears P, Sim M, Golding I, Chemla YR, Aldridge PD, Rao CV. A nutrient-tunable bistable switch controls motility in Salmonella enterica serovar Typhimurium. Mbio. 5: e01611-14. PMID 25161191 DOI: 10.1128/Mbio.01611-14  0.336
2014 Rao CV, Koirala S. Black and white with some shades of grey: the diverse responses of inducible metabolic pathways in Escherichia coli. Molecular Microbiology. 93: 1079-83. PMID 25069377 DOI: 10.1111/Mmi.12734  0.327
2014 Dunn KL, Rao CV. Expression of a xylose-specific transporter improves ethanol production by metabolically engineered Zymomonas mobilis. Applied Microbiology and Biotechnology. 98: 6897-905. PMID 24839214 DOI: 10.1007/S00253-014-5812-6  0.322
2012 Wu K, Rao CV. Computational methods in synthetic biology: towards computer-aided part design. Current Opinion in Chemical Biology. 16: 318-22. PMID 22727029 DOI: 10.1016/J.Cbpa.2012.05.003  0.523
2012 Rao CV. Expanding the synthetic biology toolbox: engineering orthogonal regulators of gene expression. Current Opinion in Biotechnology. 23: 689-94. PMID 22237017 DOI: 10.1016/J.Copbio.2011.12.015  0.323
2011 Saini S, Floess E, Aldridge C, Brown J, Aldridge PD, Rao CV. Continuous control of flagellar gene expression by the σ28-FlgM regulatory circuit in Salmonella enterica. Molecular Microbiology. 79: 264-78. PMID 21166907 DOI: 10.1111/J.1365-2958.2010.07444.X  0.304
2011 Wu K, Walukiewicz HE, Glekas GD, Ordal GW, Rao CV. Attractant binding induces distinct structural changes to the polar and lateral signaling clusters in Bacillus subtilis chemotaxis. The Journal of Biological Chemistry. 286: 2587-95. PMID 21098025 DOI: 10.1074/Jbc.M110.188664  0.508
2010 Saini S, Ellermeier JR, Slauch JM, Rao CV. The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella. Plos Pathogens. 6: e1001025. PMID 20686667 DOI: 10.1371/Journal.Ppat.1001025  0.313
2010 Nistala GJ, Wu K, Rao CV, Bhalerao KD. A modular positive feedback-based gene amplifier. Journal of Biological Engineering. 4: 4. PMID 20187959 DOI: 10.1186/1754-1611-4-4  0.522
2010 Wu K, Rao CV. The role of configuration and coupling in autoregulatory gene circuits. Molecular Microbiology. 75: 513-27. PMID 20025666 DOI: 10.1111/J.1365-2958.2009.07011.X  0.523
2010 Desai TA, Rao CV. Regulation of arabinose and xylose metabolism in Escherichia coli. Applied and Environmental Microbiology. 76: 1524-32. PMID 20023096 DOI: 10.1128/Aem.01970-09  0.334
2009 Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV. Engineering transcription factors with novel DNA-binding specificity using comparative genomics. Nucleic Acids Research. 37: 2493-503. PMID 19264798 DOI: 10.1093/Nar/Gkp079  0.317
2009 Saini S, Pearl JA, Rao CV. Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium. Journal of Bacteriology. 191: 3003-10. PMID 19218381 DOI: 10.1128/Jb.01694-08  0.309
2008 Lin D, Rao CV, Slauch JM. The Salmonella SPI1 type three secretion system responds to periplasmic disulfide bond status via the flagellar apparatus and the RcsCDB system. Journal of Bacteriology. 190: 87-97. PMID 17951383 DOI: 10.1128/Jb.01323-07  0.304
2004 Rao CV, Kirby JR, Arkin AP. Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis. Plos Biology. 2: E49. PMID 14966542 DOI: 10.1371/Journal.Pbio.0020049  0.318
2003 Rao CV, Rawlings JB, Mayne DQ. Constrained state estimation for nonlinear discrete-time systems: Stability and moving horizon approximations Ieee Transactions On Automatic Control. 48: 246-258. DOI: 10.1109/Tac.2002.808470  0.524
2002 Rao CV, Rawlings JB. Constrained process monitoring: Moving-horizon approach Aiche Journal. 48: 97-109. DOI: 10.1002/Aic.690480111  0.528
2001 Rao CV, Rawlings JB, Lee JH. Constrained linear state estimation - A moving horizon approach Automatica. 37: 1619-1628. DOI: 10.1016/S0005-1098(01)00115-7  0.52
2000 Rao CV, Rawlings JB. Linear programming and model predictive control Journal of Process Control. 10: 283-289. DOI: 10.1016/S0959-1524(99)00034-7  0.536
2000 Mayne DQ, Rawlings JB, Rao CV, Scokaert POM. Constrained model predictive control: Stability and optimality Automatica. 36: 789-814. DOI: 10.1016/S0005-1098(99)00214-9  0.538
1999 Rao CV, Rawlings JB. Steady states and constraints in model predictive control Aiche Journal. 45: 1266-1278. DOI: 10.1002/Aic.690450612  0.537
1998 Rao CV, Rawlings JB. Optimization Strategies for Linear Model Predictive Control Ifac Proceedings Volumes. 31: 41-46. DOI: 10.1016/S1474-6670(17)44904-4  0.539
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