Craig W. Vander Kooi, Ph.D. - Publications

2004 Vanderbilt University, Nashville, TN 
Medical Biophysics

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Gentry MS, Brewer MK, Vander Kooi CW. Structural biology of glucan phosphatases from humans to plants. Current Opinion in Structural Biology. 40: 62-69. PMID 27498086 DOI: 10.1016/  0.48
2016 Meekins DA, Vander Kooi CW, Gentry MS. Structural Mechanisms of Plant Glucan Phosphatases in Starch Metabolism. The Febs Journal. PMID 26934589 DOI: 10.1111/febs.13703  0.48
2016 Goel HL, Pursell B, Shultz LD, Greiner DL, Brekken RA, Vander Kooi CW, Mercurio AM. P-Rex1 Promotes Resistance to VEGF/VEGFR-Targeted Therapy in Prostate Cancer. Cell Reports. 14: 2193-208. PMID 26923603 DOI: 10.1016/j.celrep.2016.02.016  0.48
2016 McDonald NA, Takizawa Y, Feoktistova A, Xu P, Ohi MD, Vander Kooi CW, Gould KL. The Tubulation Activity of a Fission Yeast F-BAR Protein Is Dispensable for Its Function in Cytokinesis. Cell Reports. PMID 26776521 DOI: 10.1016/j.celrep.2015.12.062  0.48
2016 Thacker BE, Seamen E, Lawrence R, Parker MW, Xu Y, Liu J, Vander Kooi CW, Esko JD. Expanding the 3-O-sulfate Proteome - Enhanced Binding of Neuropilin-1 to 3-O-sulfated Heparan Sulfate Modulates its Activity. Acs Chemical Biology. PMID 26731579 DOI: 10.1021/acschembio.5b00897  0.48
2015 Miriyala S, Thippakorn C, Chaiswing L, Xu Y, Noel T, Tovmasyan A, Batinic-Haberle I, Vander Kooi CW, Chi W, Latif AA, Panchatcharam M, Prachayasittikul V, Allan Butterfield D, Vore M, Moscow J, et al. Novel role of 4-hydroxy-2-nonenal in AIFm2-mediated mitochondrial stress signaling. Free Radical Biology & Medicine. 91: 68-80. PMID 26689472 DOI: 10.1016/j.freeradbiomed.2015.12.002  0.48
2015 Guo HF, Vander Kooi CW. Neuropilin Function as an Essential Cell Surface Receptor. The Journal of Biological Chemistry. PMID 26451046 DOI: 10.1074/jbc.R115.687327  0.48
2015 Meekins DA, Raththagala M, Auger KD, Turner BD, Santelia D, Kötting O, Gentry MS, Vander Kooi CW. Mechanistic Insights into Glucan Phosphatase Activity against Polyglucan Substrates. The Journal of Biological Chemistry. 290: 23361-70. PMID 26231210 DOI: 10.1074/jbc.M115.658203  0.48
2015 Parker MW, Linkugel AD, Goel HL, Wu T, Mercurio AM, Vander Kooi CW. Structural basis for VEGF-C binding to neuropilin-2 and sequestration by a soluble splice form. Structure (London, England : 1993). 23: 677-87. PMID 25752543 DOI: 10.1016/j.str.2015.01.018  0.48
2015 Raththagala M, Brewer MK, Parker MW, Sherwood AR, Wong BK, Hsu S, Bridges TM, Paasch BC, Hellman LM, Husodo S, Meekins DA, Taylor AO, Turner BD, Auger KD, Dukhande VV, ... ... Vander Kooi CW, et al. Structural mechanism of laforin function in glycogen dephosphorylation and lafora disease. Molecular Cell. 57: 261-72. PMID 25544560 DOI: 10.1016/j.molcel.2014.11.020  0.48
2015 McDonald NA, Vander Kooi CW, Ohi MD, Gould KL. Oligomerization but Not Membrane Bending Underlies the Function of Certain F-BAR Proteins in Cell Motility and Cytokinesis Developmental Cell. 35: 725-736. DOI: 10.1016/j.devcel.2015.11.023  0.48
2014 Dunlap TB, Guo HF, Cook EC, Holbrook E, Rumi-Masante J, Lester TE, Colbert CL, Vander Kooi CW, Creamer TP. Stoichiometry of the calcineurin regulatory domain-calmodulin complex. Biochemistry. 53: 5779-90. PMID 25144868 DOI: 10.1021/bi5004734  0.48
2014 Meekins DA, Raththagala M, Husodo S, White CJ, Guo HF, Kötting O, Vander Kooi CW, Gentry MS. Phosphoglucan-bound structure of starch phosphatase Starch Excess4 reveals the mechanism for C6 specificity. Proceedings of the National Academy of Sciences of the United States of America. 111: 7272-7. PMID 24799671 DOI: 10.1073/pnas.1400757111  0.48
2014 Parker MW, Vander Kooi CW. Microplate-based screening for small molecule inhibitors of neuropilin-2/vascular endothelial growth factor-C interactions. Analytical Biochemistry. 453: 4-6. PMID 24583243 DOI: 10.1016/j.ab.2014.02.017  0.48
2014 Pierce BG, Hellman LM, Hossain M, Singh NK, Vander Kooi CW, Weng Z, Baker BM. Computational design of the affinity and specificity of a therapeutic T cell receptor. Plos Computational Biology. 10: e1003478. PMID 24550723 DOI: 10.1371/journal.pcbi.1003478  0.48
2013 Bohnert KA, Grzegorzewska AP, Willet AH, Vander Kooi CW, Kovar DR, Gould KL. SIN-dependent phosphoinhibition of formin multimerization controls fission yeast cytokinesis. Genes & Development. 27: 2164-77. PMID 24115772 DOI: 10.1101/gad.224154.113  0.48
2013 Guo HF, Li X, Parker MW, Waltenberger J, Becker PM, Vander Kooi CW. Mechanistic basis for the potent anti-angiogenic activity of semaphorin 3F. Biochemistry. 52: 7551-8. PMID 24079887 DOI: 10.1021/bi401034q  0.48
2013 Vander Kooi CW. Megaprimer method for mutagenesis of DNA. Methods in Enzymology. 529: 259-69. PMID 24011052 DOI: 10.1016/B978-0-12-418687-3.00021-5  0.48
2013 Parker MW, Linkugel AD, Vander Kooi CW. Effect of C-terminal sequence on competitive semaphorin binding to neuropilin-1. Journal of Molecular Biology. 425: 4405-14. PMID 23871893 DOI: 10.1016/j.jmb.2013.07.017  0.48
2013 Jeoung M, Abdelmoti L, Jang ER, Vander Kooi CW, Galperin E. Functional Integration of the Conserved Domains of Shoc2 Scaffold. Plos One. 8: e66067. PMID 23805200 DOI: 10.1371/journal.pone.0066067  0.48
2013 Goel HL, Pursell B, Chang C, Shaw LM, Mao J, Simin K, Kumar P, Vander Kooi CW, Shultz LD, Greiner DL, Norum JH, Toftgard R, Kuperwasser C, Mercurio AM. GLI1 regulates a novel neuropilin-2/α6β1 integrin based autocrine pathway that contributes to breast cancer initiation. Embo Molecular Medicine. 5: 488-508. PMID 23436775 DOI: 10.1002/emmm.201202078  0.48
2013 Zhang W, Sviripa V, Chen X, Shi J, Yu T, Hamza A, Ward ND, Kril LM, Vander Kooi CW, Zhan CG, Evers BM, Watt DS, Liu C. Fluorinated N,N-dialkylaminostilbenes repress colon cancer by targeting methionine S-adenosyltransferase 2A. Acs Chemical Biology. 8: 796-803. PMID 23363077 DOI: 10.1021/cb3005353  0.48
2012 Parker MW, Xu P, Guo HF, Vander Kooi CW. Mechanism of selective VEGF-A binding by neuropilin-1 reveals a basis for specific ligand inhibition. Plos One. 7: e49177. PMID 23145112 DOI: 10.1371/journal.pone.0049177  0.48
2012 Parker MW, Guo HF, Li X, Linkugel AD, Vander Kooi CW. Function of members of the neuropilin family as essential pleiotropic cell surface receptors. Biochemistry. 51: 9437-46. PMID 23116416 DOI: 10.1021/bi3012143  0.48
2012 Parker MW, Xu P, Li X, Vander Kooi CW. Structural basis for selective vascular endothelial growth factor-A (VEGF-A) binding to neuropilin-1. The Journal of Biological Chemistry. 287: 11082-9. PMID 22318724 DOI: 10.1074/jbc.M111.331140  0.48
2010 Vander Kooi CW, Ren L, Xu P, Ohi MD, Gould KL, Chazin WJ. The Prp19 WD40 domain contains a conserved protein interaction region essential for its function Structure. 18: 584-593. PMID 20462492 DOI: 10.1016/j.str.2010.02.015  0.48
2010 Merte J, Wang Q, Vander Kooi CW, Sarsfield S, Leahy DJ, Kolodkin AL, Ginty DD. A forward genetic screen in mice identifies Sema3A(K108N), which binds to neuropilin-1 but cannot signal. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 5767-75. PMID 20410128 DOI: 10.1523/JNEUROSCI.5061-09.2010  0.48
2010 Parker MW, Hellman LM, Xu P, Fried MG, Vander Kooi CW. Furin processing of semaphorin 3F determines its anti-angiogenic activity by regulating direct binding and competition for neuropilin. Biochemistry. 49: 4068-75. PMID 20387901 DOI: 10.1021/bi100327r  0.48
2009 Bohnert KA, Chen JS, Clifford DM, Vander Kooi CW, Gould KL. A link between aurora kinase and Clp1/Cdc14 regulation uncovered by the identification of a fission yeast borealin-like protein. Molecular Biology of the Cell. 20: 3646-59. PMID 19570910 DOI: 10.1091/mbc.E09-04-0289  0.48
2008 Mori MX, Vander Kooi CW, Leahy DJ, Yue DT. Crystal structure of the CaV2 IQ domain in complex with Ca2+/calmodulin: high-resolution mechanistic implications for channel regulation by Ca2+. Structure (London, England : 1993). 16: 607-20. PMID 18400181 DOI: 10.1016/j.str.2008.01.011  0.48
2007 Dattilo BM, Fritz G, Leclerc E, Kooi CW, Heizmann CW, Chazin WJ. The extracellular region of the receptor for advanced glycation end products is composed of two independent structural units. Biochemistry. 46: 6957-70. PMID 17508727 DOI: 10.1021/bi7003735  0.48
2007 Vander Kooi CW, Jusino MA, Perman B, Neau DB, Bellamy HD, Leahy DJ. Structural basis for ligand and heparin binding to neuropilin B domains. Proceedings of the National Academy of Sciences of the United States of America. 104: 6152-7. PMID 17405859 DOI: 10.1073/pnas.0700043104  0.48
2006 Vander Kooi CW, Ohi MD, Rosenberg JA, Oldham ML, Newcomer ME, Gould KL, Chazin WJ. The Prp19 U-box crystal structure suggests a common dimeric architecture for a class of oligomeric E3 ubiquitin ligases Biochemistry. 45: 121-130. PMID 16388587 DOI: 10.1021/bi051787e  0.48
2005 Vander Kooi BT, Onuma H, Oeser JK, Svitek CA, Allen SR, Vander Kooi CW, Chazin WJ, O'Brien RM. The glucose-6-phosphatase catalytic subunit gene promoter contains both positive and negative glucocorticoid response elements. Molecular Endocrinology (Baltimore, Md.). 19: 3001-22. PMID 16037130 DOI: 10.1210/me.2004-0497  0.48
2005 Malmendal A, Vander Kooi CW, Nielsen NC, Chazin WJ. Calcium-modulated S100 protein-phospholipid interactions. An NMR study of calbindin D9k and DPC. Biochemistry. 44: 6502-12. PMID 15850384 DOI: 10.1021/bi050088z  0.48
2005 Ohi MD, Vander Kooi CW, Rosenberg JA, Ren L, Hirsch JP, Chazin WJ, Walz T, Gould KL. Structural and functional analysis of essential pre-mRNA splicing factor Prp19p. Molecular and Cellular Biology. 25: 451-60. PMID 15601865 DOI: 10.1128/MCB.25.1.451-460.2005  0.48
2003 Ohi MD, Vander Kooi CW, Rosenberg JA, Chazin WJ, Gould KL. Structural insights into the U-box, a domain associated with multi-ubiquitination. Nature Structural Biology. 10: 250-5. PMID 12627222 DOI: 10.1038/nsb906  0.48
2001 Hall DA, Vander Kooi CW, Stasik CN, Stevens SY, Zuiderweg ER, Matthews RG. Mapping the interactions between flavodoxin and its physiological partners flavodoxin reductase and cobalamin-dependent methionine synthase. Proceedings of the National Academy of Sciences of the United States of America. 98: 9521-6. PMID 11493691 DOI: 10.1073/pnas.171168898  0.48
2000 Pellecchia M, Montgomery DL, Stevens SY, Vander Kooi CW, Feng HP, Gierasch LM, Zuiderweg ER. Structural insights into substrate binding by the molecular chaperone DnaK. Nature Structural Biology. 7: 298-303. PMID 10742174 DOI: 10.1038/74062  0.48
2000 Pellecchia M, Vander Kooi CW, Keliikuli K, Zuiderweg ER. Magnetization transfer via residual dipolar couplings: application to proton-proton correlations in partially aligned proteins. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 143: 435-9. PMID 10729274 DOI: 10.1006/jmre.2000.2058  0.48
1999 Vander Kooi CW, Kupce E, Zuiderweg ER, Pellecchia M. Line narrowing in spectra of proteins dissolved in a dilute liquid crystalline phase by band-selective adiabatic decoupling: application to 1HN-15N residual dipolar coupling measurements. Journal of Biomolecular Nmr. 15: 335-8. PMID 10685341 DOI: 10.1023/A:1008387305293  0.48
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