| Year |
Citation |
Score |
| 2020 |
Walls WD, Moteki H, Thomas TR, Nishio SY, Yoshimura H, Iwasa Y, Frees KL, Nishimura CJ, Azaiez H, Booth KT, Marini RJ, Kolbe DL, Weaver AM, Schaefer AM, Wang K, ... ... Casavant TL, et al. A comparative analysis of genetic hearing loss phenotypes in European/American and Japanese populations. Human Genetics. PMID 32382995 DOI: 10.1007/S00439-020-02174-Y |
0.32 |
|
| 2019 |
Tollefson MR, Litman JM, Qi G, O'Connell CE, Wipfler MJ, Marini RJ, Bernabe HV, Tollefson WTA, Braun TA, Casavant TL, Smith RJH, Schnieders MJ. Structural Insights into Hearing Loss Genetics from Polarizable Protein Repacking. Biophysical Journal. PMID 31327459 DOI: 10.1016/J.Bpj.2019.06.030 |
0.324 |
|
| 2018 |
Azaiez H, Booth KT, Ephraim SS, Crone B, Black-Ziegelbein EA, Marini RJ, Shearer AE, Sloan-Heggen CM, Kolbe D, Casavant T, Schnieders MJ, Nishimura C, Braun T, Smith RJH. Genomic Landscape and Mutational Signatures of Deafness-Associated Genes. American Journal of Human Genetics. PMID 30245029 DOI: 10.1016/J.Ajhg.2018.08.006 |
0.37 |
|
| 2016 |
Monson ET, de Klerk K, Gaynor SC, Wagner AH, Breen ME, Parsons M, Casavant TL, Zandi PP, Potash JB, Willour VL. Whole-gene sequencing investigation of SAT1 in attempted suicide. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. PMID 27229768 DOI: 10.1002/Ajmg.B.32462 |
0.308 |
|
| 2015 |
Goodman CW, Major HJ, Walls WD, Sheffield VC, Casavant TL, Darbro BW. CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays. Journal of Biomedical Informatics. 54: 106-13. PMID 25595567 DOI: 10.1016/J.Jbi.2015.01.001 |
0.327 |
|
| 2014 |
Shearer AE, Eppsteiner RW, Booth KT, Ephraim SS, Gurrola J, Simpson A, Black-Ziegelbein EA, Joshi S, Ravi H, Giuffre AC, Happe S, Hildebrand MS, Azaiez H, Bayazit YA, Erdal ME, ... ... Casavant TL, et al. Utilizing ethnic-specific differences in minor allele frequency to recategorize reported pathogenic deafness variants. American Journal of Human Genetics. 95: 445-53. PMID 25262649 DOI: 10.1016/J.Ajhg.2014.09.001 |
0.337 |
|
| 2013 |
Shearer AE, Black-Ziegelbein EA, Hildebrand MS, Eppsteiner RW, Ravi H, Joshi S, Guiffre AC, Sloan CM, Happe S, Howard SD, Novak B, Deluca AP, Taylor KR, Scheetz TE, Braun TA, ... Casavant TL, et al. Advancing genetic testing for deafness with genomic technology. Journal of Medical Genetics. 50: 627-34. PMID 23804846 DOI: 10.1136/Jmedgenet-2013-101749 |
0.36 |
|
| 2013 |
Nannapaneni K, Ben-Shahar Y, Keen HL, Welsh MJ, Casavant TL, Scheetz TE. Computational identification of operon-like transcriptional loci in eukaryotes. Computers in Biology and Medicine. 43: 738-43. PMID 23668349 DOI: 10.1016/J.Compbiomed.2013.03.004 |
0.351 |
|
| 2013 |
Wagner AH, Taylor KR, DeLuca AP, Casavant TL, Mullins RF, Stone EM, Scheetz TE, Braun TA. Prioritization of retinal disease genes: an integrative approach. Human Mutation. 34: 853-9. PMID 23508994 DOI: 10.1002/Humu.22317 |
0.374 |
|
| 2013 |
Wagner AH, Anand VN, Wang WH, Chatterton JE, Sun D, Shepard AR, Jacobson N, Pang IH, Deluca AP, Casavant TL, Scheetz TE, Mullins RF, Braun TA, Clark AF. Exon-level expression profiling of ocular tissues. Experimental Eye Research. 111: 105-11. PMID 23500522 DOI: 10.1016/J.Exer.2013.03.004 |
0.335 |
|
| 2013 |
Taylor KR, Deluca AP, Shearer AE, Hildebrand MS, Black-Ziegelbein EA, Anand VN, Sloan CM, Eppsteiner RW, Scheetz TE, Huygen PL, Smith RJ, Braun TA, Casavant TL. AudioGene: predicting hearing loss genotypes from phenotypes to guide genetic screening. Human Mutation. 34: 539-45. PMID 23280582 DOI: 10.1002/Humu.22268 |
0.33 |
|
| 2012 |
Cai J, Keen HL, Sigmund CD, Casavant TL. Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. Journal of Integrative Bioinformatics. 9: 208. PMID 22842118 DOI: 10.2390/Biecoll-Jib-2012-208 |
0.378 |
|
| 2012 |
Eppsteiner RW, Shearer AE, Hildebrand MS, Taylor KR, Deluca AP, Scherer S, Huygen P, Scheetz TE, Braun TA, Casavant TL, Smith RJ. Using the phenome and genome to improve genetic diagnosis for deafness. Otolaryngology--Head and Neck Surgery : Official Journal of American Academy of Otolaryngology-Head and Neck Surgery. 147: 975-7. PMID 22785243 DOI: 10.1177/0194599812454271 |
0.331 |
|
| 2010 |
Hamm CA, Stevens JW, Xie H, Vanin EF, Morcuende JA, Abdulkawy H, Seftor EA, Sredni ST, Bischof JM, Wang D, Malchenko S, Bonaldo Mde F, Casavant TL, Hendrix MJ, Soares MB. Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors. Bmc Cancer. 10: 471. PMID 20809981 DOI: 10.1186/1471-2407-10-471 |
0.317 |
|
| 2010 |
Macagno ER, Gaasterland T, Edsall L, Bafna V, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. Bmc Genomics. 11: 407. PMID 20579359 DOI: 10.1186/1471-2164-11-407 |
0.419 |
|
| 2010 |
Keen HL, Halabi CM, Beyer AM, de Lange WJ, Liu X, Maeda N, Faraci FM, Casavant TL, Sigmund CD. Bioinformatic analysis of gene sets regulated by ligand-activated and dominant-negative peroxisome proliferator-activated receptor gamma in mouse aorta. Arteriosclerosis, Thrombosis, and Vascular Biology. 30: 518-25. PMID 20018933 DOI: 10.1161/Atvbaha.109.200733 |
0.354 |
|
| 2009 |
Hildebrand MS, DeLuca AP, Taylor KR, Hoskinson DP, Hur IA, Tack D, McMordie SJ, Huygen PL, Casavant TL, Smith RJ. A contemporary review of AudioGene audioprofiling: a machine-based candidate gene prediction tool for autosomal dominant nonsyndromic hearing loss. The Laryngoscope. 119: 2211-5. PMID 19780026 DOI: 10.1002/Lary.20664 |
0.315 |
|
| 2008 |
Hildebrand MS, Tack D, McMordie SJ, DeLuca A, Hur IA, Nishimura C, Huygen P, Casavant TL, Smith RJ. Audioprofile-directed screening identifies novel mutations in KCNQ4 causing hearing loss at the DFNA2 locus. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 10: 797-804. PMID 18941426 DOI: 10.1097/Gim.0B013E318187E106 |
0.323 |
|
| 2008 |
Chun CK, Troll JV, Koroleva I, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Ruby EG, McFall-Ngai MJ. Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association. Proceedings of the National Academy of Sciences of the United States of America. 105: 11323-8. PMID 18682555 DOI: 10.1073/Pnas.0802369105 |
0.321 |
|
| 2008 |
Kalari KR, Casavant TL, Scheetz TE. A knowledge-based approach to predict intragenic deletions or duplications. Bioinformatics (Oxford, England). 24: 1975-9. PMID 18647756 DOI: 10.1093/Bioinformatics/Btn370 |
0.396 |
|
| 2007 |
O'Leary BM, Davis SG, Smith MF, Brown B, Kemp MB, Almabrazi H, Grundstad JA, Burns T, Leontiev V, Andorf J, Clark AF, Sheffield VC, Casavant TL, Scheetz TE, Stone EM, et al. Transcript annotation prioritization and screening system (TrAPSS) for mutation screening. Journal of Bioinformatics and Computational Biology. 5: 1155-72. PMID 18172923 DOI: 10.1142/S0219720007003132 |
0.409 |
|
| 2007 |
Ben-Shahar Y, Nannapaneni K, Casavant TL, Scheetz TE, Welsh MJ. Eukaryotic operon-like transcription of functionally related genes in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 104: 222-7. PMID 17190802 DOI: 10.1073/Pnas.0609683104 |
0.387 |
|
| 2006 |
Scheetz TE, Kim KY, Swiderski RE, Philp AR, Braun TA, Knudtson KL, Dorrance AM, DiBona GF, Huang J, Casavant TL, Sheffield VC, Stone EM. Regulation of gene expression in the mammalian eye and its relevance to eye disease. Proceedings of the National Academy of Sciences of the United States of America. 103: 14429-34. PMID 16983098 DOI: 10.1073/Pnas.0602562103 |
0.413 |
|
| 2006 |
Dillon RJ, Ivens AC, Churcher C, Holroyd N, Quail MA, Rogers ME, Soares MB, Bonaldo MF, Casavant TL, Lehane MJ, Bates PA. Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship. Genomics. 88: 831-40. PMID 16887324 DOI: 10.1016/J.Ygeno.2006.06.011 |
0.391 |
|
| 2006 |
Chun CK, Scheetz TE, Bonaldo Mde F, Brown B, Clemens A, Crookes-Goodson WJ, Crouch K, DeMartini T, Eyestone M, Goodson MS, Janssens B, Kimbell JL, Koropatnick TA, Kucaba T, Smith C, ... ... Casavant TL, et al. An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri. Bmc Genomics. 7: 154. PMID 16780587 DOI: 10.1186/1471-2164-7-154 |
0.359 |
|
| 2006 |
Bischof JM, Chiang AP, Scheetz TE, Stone EM, Casavant TL, Sheffield VC, Braun TA. Genome-wide identification of pseudogenes capable of disease-causing gene conversion. Human Mutation. 27: 545-52. PMID 16671097 DOI: 10.1002/Humu.20335 |
0.394 |
|
| 2006 |
Chiang AP, Beck JS, Yen HJ, Tayeh MK, Scheetz TE, Swiderski RE, Nishimura DY, Braun TA, Kim KY, Huang J, Elbedour K, Carmi R, Slusarski DC, Casavant TL, Stone EM, et al. Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11). Proceedings of the National Academy of Sciences of the United States of America. 103: 6287-92. PMID 16606853 DOI: 10.1073/Pnas.0600158103 |
0.375 |
|
| 2006 |
Braun TA, Shankar SP, Davis S, O'Leary B, Scheetz TE, Clark AF, Sheffield VC, Casavant TL, Stone EM. Prioritizing regions of candidate genes for efficient mutation screening. Human Mutation. 27: 195-200. PMID 16395665 DOI: 10.1002/Humu.20247 |
0.417 |
|
| 2005 |
Sibenaller ZA, Etame AB, Ali MM, Barua M, Braun TA, Casavant TL, Ryken TC. Genetic characterization of commonly used glioma cell lines in the rat animal model system. Neurosurgical Focus. 19: E1. PMID 16241103 DOI: 10.3171/Foc.2005.19.4.2 |
0.341 |
|
| 2005 |
Zabner J, Scheetz TE, Almabrazi HG, Casavant TL, Huang J, Keshavjee S, McCray PB. CFTR DeltaF508 mutation has minimal effect on the gene expression profile of differentiated human airway epithelia. American Journal of Physiology. Lung Cellular and Molecular Physiology. 289: L545-53. PMID 15937068 DOI: 10.1152/Ajplung.00065.2005 |
0.338 |
|
| 2005 |
Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D. Insights into a dinoflagellate genome through expressed sequence tag analysis. Bmc Genomics. 6: 80. PMID 15921535 DOI: 10.1186/1471-2164-6-80 |
0.412 |
|
| 2005 |
Scheetz TE, Trivedi N, Pedretti KT, Braun TA, Casavant TL. Gene transcript clustering: A comparison of parallel approaches Future Generation Computer Systems. 21: 731-735. DOI: 10.1016/J.Future.2004.05.014 |
0.326 |
|
| 2004 |
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, ... ... Casavant TL, et al. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Research. 14: 2121-7. PMID 15489334 DOI: 10.1101/Gr.2596504 |
0.395 |
|
| 2004 |
Bonaldo MF, Bair TB, Scheetz TE, Snir E, Akabogu I, Bair JL, Berger B, Crouch K, Davis A, Eyestone ME, Keppel C, Kucaba TA, Lebeck M, Lin JL, de Melo AI, ... ... Casavant TL, et al. 1274 full-open reading frames of transcripts expressed in the developing mouse nervous system. Genome Research. 14: 2053-63. PMID 15489326 DOI: 10.1101/Gr.2601304 |
0.36 |
|
| 2004 |
Stone EM, Braun TA, Russell SR, Kuehn MH, Lotery AJ, Moore PA, Eastman CG, Casavant TL, Sheffield VC. Missense variations in the fibulin 5 gene and age-related macular degeneration. The New England Journal of Medicine. 351: 346-53. PMID 15269314 DOI: 10.1056/NEJMOA040833 |
0.372 |
|
| 2004 |
Chiang AP, Nishimura D, Searby C, Elbedour K, Carmi R, Ferguson AL, Secrist J, Braun T, Casavant T, Stone EM, Sheffield VC. Comparative genomic analysis identifies an ADP-ribosylation factor-like gene as the cause of Bardet-Biedl syndrome (BBS3). American Journal of Human Genetics. 75: 475-84. PMID 15258860 DOI: 10.1086/423903 |
0.43 |
|
| 2004 |
Zhao SH, Simmons DG, Cross JC, Scheetz TE, Casavant TL, Soares MB, Tuggle CK. PLET1 (C11orf34), a highly expressed and processed novel gene in pig and mouse placenta, is transcribed but poorly spliced in human. Genomics. 84: 114-25. PMID 15203209 DOI: 10.1016/J.Ygeno.2004.02.006 |
0.376 |
|
| 2004 |
Mykytyn K, Mullins RF, Andrews M, Chiang AP, Swiderski RE, Yang B, Braun T, Casavant T, Stone EM, Sheffield VC. Bardet-Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly. Proceedings of the National Academy of Sciences of the United States of America. 101: 8664-9. PMID 15173597 DOI: 10.1073/Pnas.0402354101 |
0.301 |
|
| 2004 |
Kwitek AE, Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, Pasko D, Chen D, Scheetz TE, Casavant TL, Soares MB, et al. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Genome Research. 14: 750-7. PMID 15060019 DOI: 10.1101/Gr.1968704 |
0.346 |
|
| 2004 |
Scheetz TE, Laffin JJ, Berger B, Holte S, Baumes SA, Brown R, Chang S, Coco J, Conklin J, Crouch K, Donohue M, Doonan G, Estes C, Eyestone M, Fishler K, ... ... Casavant TL, et al. High-throughput gene discovery in the rat. Genome Research. 14: 733-41. PMID 15060017 DOI: 10.1101/Gr.1414204 |
0.366 |
|
| 2004 |
Keen HL, Ryan MJ, Beyer A, Mathur S, Scheetz TE, Gackle BD, Faraci FM, Casavant TL, Sigmund CD. Gene expression profiling of potential PPARgamma target genes in mouse aorta. Physiological Genomics. 18: 33-42. PMID 15054141 DOI: 10.1152/Physiolgenomics.00027.2004 |
0.377 |
|
| 2004 |
Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Nosenko T, Bhattacharya D. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Current Biology : Cb. 14: 213-8. PMID 14761653 DOI: 10.1016/J.Cub.2004.01.032 |
0.4 |
|
| 2004 |
Scheetz TE, Zabner J, Welsh MJ, Coco J, Eyestone Mde F, Bonaldo M, Kucaba T, Casavant TL, Soares MB, McCray PB. Large-scale gene discovery in human airway epithelia reveals novel transcripts. Physiological Genomics. 17: 69-77. PMID 14701920 DOI: 10.1152/Physiolgenomics.00188.2003 |
0.371 |
|
| 2004 |
Kang Y, Scheetz TE, Moressi CJ, Tran DT, Xie L, Davidson BL, Casavant TL, McCray PB. 4. In Vitro and In Vivo Analysis of Feline Immunodeficiency Virus-Based Lentiviral Vector Integration|[ast]| Molecular Therapy. 9. DOI: 10.1016/J.Ymthe.2004.05.086 |
0.361 |
|
| 2003 |
Tuggle CK, Green JA, Fitzsimmons C, Woods R, Prather RS, Malchenko S, Soares BM, Kucaba T, Crouch K, Smith C, Tack D, Robinson N, O'Leary B, Scheetz T, Casavant T, et al. EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 14: 565-79. PMID 12925889 DOI: 10.1007/S00335-002-2263-7 |
0.434 |
|
| 2003 |
Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL. ESTprep: preprocessing cDNA sequence reads. Bioinformatics (Oxford, England). 19: 1318-24. PMID 12874042 DOI: 10.1093/Bioinformatics/Btg159 |
0.36 |
|
| 2003 |
Braun TA, Scheetz TE, Webster G, Clark A, Stone EM, Sheffield VC, Casavant TL. Identifying candidate disease genes with high-performance computing Journal of Supercomputing. 26: 7-24. DOI: 10.1023/A:1024417200364 |
0.461 |
|
| 2002 |
Scheetz T, Bartlett JA, Walters JD, Schutte BC, Casavant TL, McCray PB. Genomics-based approaches to gene discovery in innate immunity. Immunological Reviews. 190: 137-45. PMID 12493011 DOI: 10.1034/J.1600-065X.2002.19010.X |
0.408 |
|
| 2002 |
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, ... ... Casavant TL, et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 16899-903. PMID 12477932 DOI: 10.1073/Pnas.242603899 |
0.404 |
|
| 2002 |
Gavin AJ, Scheetz TE, Roberts CA, O'Leary B, Braun TA, Sheffield VC, Soares MB, Robinson JP, Casavant TL. Pooled library tissue tags for EST-based gene discovery. Bioinformatics (Oxford, England). 18: 1162-6. PMID 12217907 DOI: 10.1093/Bioinformatics/18.9.1162 |
0.365 |
|
| 2002 |
Schutte BC, Mitros JP, Bartlett JA, Walters JD, Jia HP, Welsh MJ, Casavant TL, McCray PB. Discovery of five conserved beta -defensin gene clusters using a computational search strategy. Proceedings of the National Academy of Sciences of the United States of America. 99: 2129-33. PMID 11854508 DOI: 10.1073/Pnas.042692699 |
0.374 |
|
| 2001 |
Kwitek AE, Tonellato PJ, Chen D, Gullings-Handley J, Cheng YS, Twigger S, Scheetz TE, Casavant TL, Stoll M, Nobrega MA, Shiozawa M, Soares MB, Sheffield VC, Jacob HJ. Automated construction of high-density comparative maps between rat, human, and mouse Genome Research. 11: 1935-1943. PMID 11691858 DOI: 10.1101/Gr.173701 |
0.349 |
|
| 2001 |
Mykytyn K, Braun T, Carmi R, Haider NB, Searby CC, Shastri M, Beck G, Wright AF, Iannaccone A, Elbedour K, Riise R, Baldi A, Raas-Rothschild A, Gorman SW, Duhl DM, ... ... Casavant T, et al. Identification of the gene that, when mutated, causes the human obesity syndrome BBS4. Nature Genetics. 28: 188-91. PMID 11381270 DOI: 10.1038/88925 |
0.324 |
|
| 2001 |
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, ... ... Casavant T, et al. Functional annotation of a full-length mouse cDNA collection. Nature. 409: 685-90. PMID 11217851 DOI: 10.1038/35055500 |
0.415 |
|
| 2001 |
Braun RC, Pedretti KT, Casavant TL, Scheetz TE, Birkett CL, Roberts CA. Parallelization of local BLAST service on workstation clusters Future Generation Computer Systems. 17: 745-754. DOI: 10.1016/S0167-739X(00)00057-1 |
0.379 |
|
| 2000 |
Dimopoulos G, Casavant TL, Chang S, Scheetz T, Roberts C, Donohue M, Schultz J, Benes V, Bork P, Ansorge W, Soares MB, Kafatos FC. Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines. Proceedings of the National Academy of Sciences of the United States of America. 97: 6619-24. PMID 10841561 DOI: 10.1073/Pnas.97.12.6619 |
0.392 |
|
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