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Michael P. Washburn - Publications

Affiliations: 
Stowers Instititute for Medical Research 
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230 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wang P, Sarkar S, Zhang M, Xiao T, Kong F, Zhang Z, Balasubramanian D, Jayaram N, Datta S, He R, Wu P, Chao P, Zhang Y, Washburn M, Florens LA, et al. DYRK1A interacts with the tuberous sclerosis complex and promotes mTORC1 activity. Elife. 12. PMID 39436397 DOI: 10.7554/eLife.88318  0.304
2024 Goswami P, Banks CAS, Thornton J, Bengs BD, Sardiu ME, Florens L, Washburn MP. Distinct Regions within SAP25 Recruit O-Linked Glycosylation, DNA Demethylation, and Ubiquitin Ligase and Hydrolase Activities to the Sin3/HDAC Complex. Journal of Proteome Research. PMID 39435885 DOI: 10.1021/acs.jproteome.4c00498  0.45
2024 Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y, Garcia BA, Slaughter BD, Unruh JR, Viswanath S, Florens L, ... ... Washburn MP, et al. An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome. Proceedings of the National Academy of Sciences of the United States of America. 121: e2318601121. PMID 39116123 DOI: 10.1073/pnas.2318601121  0.51
2024 Goswami P, Banks CAS, Thornton J, Bengs B, Sardiu ME, Florens L, Washburn MP. Distinct regions within SAP25 recruit O-linked glycosylation, DNA demethylation, and ubiquitin ligase and hydrolase activities to the Sin3/HDAC complex. Biorxiv : the Preprint Server For Biology. PMID 38496433 DOI: 10.1101/2024.03.05.583553  0.437
2023 Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Lange JJ, Cesare J, Bhattacharya S, Slaughter BD, Unruh JR, Florens L, Workman JL, Washburn MP. Serial Capture Affinity Purification and Integrated Structural Modeling of the H3K4me3 Binding and DNA Damage Related WDR76:SPIN1 Complex. Biorxiv : the Preprint Server For Biology. PMID 36778327 DOI: 10.1101/2023.01.31.526478  0.542
2021 Bhattacharya S, Wang S, Reddy D, Shen S, Zhang Y, Zhang N, Li H, Washburn MP, Florens L, Shi Y, Workman JL, Li F. Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing. Nature Communications. 12: 6452. PMID 34750379 DOI: 10.1038/s41467-021-26799-3  0.513
2021 Bhattacharya S, Lange JJ, Levy M, Florens L, Washburn MP, Workman JL. The disordered regions of the methyltransferase SETD2 govern its function by regulating its proteolysis and phase separation. The Journal of Biological Chemistry. 101075. PMID 34391778 DOI: 10.1016/j.jbc.2021.101075  0.52
2021 Bhattacharya S, Levy MJ, Zhang N, Li H, Florens L, Washburn MP, Workman JL. The methyltransferase SETD2 couples transcription and splicing by engaging mRNA processing factors through its SHI domain. Nature Communications. 12: 1443. PMID 33664260 DOI: 10.1038/s41467-021-21663-w  0.514
2020 Adams MK, Banks CAS, Thornton JL, Kempf CG, Zhang Y, Miah S, Hao Y, Sardiu ME, Killer M, Hattem GL, Murray A, Katt ML, Florens L, Washburn MP. Differential Complex Formation via Paralogs in the Human Sin3 Protein Interaction Network. Molecular & Cellular Proteomics : McP. 19: 1468-1484. PMID 33451730 DOI: 10.1074/mcp.RA120.002078  0.389
2020 Oh S, Lee J, Swanson SK, Florens L, Washburn MP, Workman JL. Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling. Elife. 9. PMID 33372657 DOI: 10.7554/eLife.64588  0.484
2020 Lee J, Oh S, Bhattacharya S, Zhang Y, Florens L, Washburn MP, Workman JL. The plasticity of the pyruvate dehydrogenase complex confers a labile structure that is associated with its catalytic activity. Plos One. 15: e0243489. PMID 33370314 DOI: 10.1371/journal.pone.0243489  0.543
2020 Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Lange JJ, Slaughter BD, Unruh JR, Florens L, Abmayr SM, Workman JL, Washburn MP. Driving integrative structural modeling with serial capture affinity purification. Proceedings of the National Academy of Sciences of the United States of America. PMID 33257578 DOI: 10.1073/pnas.2007931117  0.555
2020 Tao F, Soffers J, Hu D, Chen S, Gao X, Zhang Y, Zhao C, Smith SE, Unruh JR, Zhang D, Tsuchiya D, Venkatraman A, Zhao M, Li Z, Qian P, ... ... Washburn M, et al. β-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells. Stem Cell Reports. PMID 32822591 DOI: 10.1016/J.Stemcr.2020.07.018  0.503
2020 Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, ... ... Washburn MP, et al. Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. Nature. PMID 32555463 DOI: 10.1038/S41586-020-2418-2  0.347
2020 Adams MK, Banks CAS, Thornton JL, Kempf C, Zhang Y, Miah S, Hao Y, Sardiu ME, Killer M, Hattem G, Murray A, Katt M, Florens LA, Washburn MP. Differential complex formation via paralogs in the human Sin3 protein interaction network. Molecular & Cellular Proteomics : McP. PMID 32467258 DOI: 10.1074/Mcp.Ra120.002078  0.488
2020 Banks CAS, Zhang Y, Miah S, Hao Y, Adams MK, Wen Z, Thornton JL, Florens L, Washburn MP. Integrative Modeling of a Sin3/HDAC Complex Sub-structure. Cell Reports. 31: 107516. PMID 32294434 DOI: 10.1016/J.Celrep.2020.03.080  0.43
2020 Park DE, Cheng J, McGrath JP, Lim MY, Cushman C, Swanson SK, Tillgren ML, Paulo JA, Gokhale PC, Florens L, Washburn MP, Trojer P, DeCaprio JA. Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis. Nature Cell Biology. PMID 32284543 DOI: 10.1038/S41556-020-0503-2  0.393
2020 Yasukawa T, Tsutsui A, Tomomori-Sato C, Sato S, Saraf A, Washburn MP, Florens L, Terada T, Shimizu K, Conaway RC, Conaway JW, Aso T. NRBP1-Containing CRL2/CRL4A Regulates Amyloid β Production by Targeting BRI2 and BRI3 for Degradation. Cell Reports. 30: 3478-3491.e6. PMID 32160551 DOI: 10.1016/J.Celrep.2020.02.059  0.313
2020 Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, ... ... Washburn MP, et al. The role of Mediator and Little Elongation Complex in transcription termination. Nature Communications. 11: 1063. PMID 32102997 DOI: 10.1038/S41467-020-14849-1  0.467
2020 Batugedara G, Lu XM, Saraf A, Sardiu ME, Cort A, Abel S, Prudhomme J, Washburn MP, Florens L, Bunnik EM, Le Roch KG. The chromatin bound proteome of the human malaria parasite. Microbial Genomics. PMID 32017676 DOI: 10.1099/mgen.0.000327  0.362
2020 Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, et al. STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells. Elife. 9. PMID 31913126 DOI: 10.7554/Elife.53003  0.374
2019 Levy MJ, Montgomery DC, Sardiu ME, Montano JL, Bergholtz SE, Nance KD, Thorpe AL, Fox SD, Lin Q, Andresson T, Florens L, Washburn MP, Meier JL. A Systems Chemoproteomic Analysis of Acyl-CoA/Protein Interaction Networks. Cell Chemical Biology. PMID 31836350 DOI: 10.1016/J.Chembiol.2019.11.011  0.39
2019 Miah S, Banks CAS, Ogunbolude Y, Bagu ET, Berg JM, Saraf A, Tettey TT, Hattem G, Dayebgadoh G, Kempf CG, Sardiu M, Napper S, Florens L, Lukong KE, Washburn MP. BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential. Science Advances. 5: eaaw3113. PMID 31681835 DOI: 10.1126/Sciadv.Aaw3113  0.303
2019 Adams MK, Banks CAS, Miah S, Killer M, Washburn MP. Purification and enzymatic assay of class I histone deacetylase enzymes. Methods in Enzymology. 626: 23-40. PMID 31606077 DOI: 10.1016/Bs.Mie.2019.07.014  0.402
2019 Dayebgadoh G, Sardiu ME, Florens L, Washburn MP. Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome. Journal of Proteome Research. PMID 31353912 DOI: 10.1021/Acs.Jproteome.9B00373  0.451
2019 Cloud V, Thapa A, Morales-Sosa P, Miller T, Miller SA, Holsapple D, Gerhart P, Momtahan E, Jack JL, Leiva E, Rapp SR, Shelton LG, Pierce RA, Martin-Brown S, Florens L, ... Washburn MP, et al. Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization. Elife. 8. PMID 31348003 DOI: 10.7554/Elife.49677  0.414
2019 Palma M, Riffo EN, Suganuma T, Washburn MP, Workman JL, Pincheira R, Castro AF. Identification of a nuclear localization signal and importin beta members mediating NUAK1 nuclear import inhibited by oxidative stress. Journal of Cellular Biochemistry. PMID 31090959 DOI: 10.1002/Jcb.28890  0.527
2019 Zhang Y, Wen Z, Washburn MP, Florens L. Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. Journal of Proteome Research. PMID 30884231 DOI: 10.1021/Acs.Jproteome.9B00036  0.352
2019 Sardiu ME, Gilmore JM, Groppe BD, Dutta A, Florens L, Washburn MP. Topological scoring of protein interaction networks. Nature Communications. 10: 1118. PMID 30850613 DOI: 10.1038/S41467-019-09123-Y  0.43
2019 Zhou N, Gutierrez-Uzquiza A, Zheng XY, Chang R, Vogl DT, Garfall AL, Bernabei L, Saraf A, Florens L, Washburn MP, Illendula A, Bushweller JH, Busino L. RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation. Leukemia. PMID 30760870 DOI: 10.1038/S41375-019-0403-2  0.353
2019 Kulkarni RA, Bak DW, Wei D, Bergholtz SE, Briney CA, Shrimp JH, Alpsoy A, Thorpe AL, Bavari AE, Crooks DR, Levy M, Florens L, Washburn MP, Frizzell N, Dykhuizen EC, et al. A chemoproteomic portrait of the oncometabolite fumarate. Nature Chemical Biology. PMID 30718813 DOI: 10.1038/S41589-018-0217-Y  0.347
2019 Soffers JHM, Li X, Saraf A, Seidel CW, Florens L, Washburn MP, Abmayr SM, Workman JL. Characterization of a metazoan ADA acetyltransferase complex. Nucleic Acids Research. PMID 30715476 DOI: 10.1093/Nar/Gkz042  0.603
2019 Cloud V, Thapa A, Morales-Sosa P, Miller TM, Miller SA, Holsapple D, Gerhart PM, Momtahan E, Jack JL, Leiva E, Rapp SR, Shelton LG, Pierce RA, Martin-Brown S, Florens L, ... Washburn MP, et al. Author response: Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization Elife. DOI: 10.7554/Elife.49677.017  0.301
2018 Jeong YT, Simoneschi D, Keegan S, Melville D, Adler NS, Saraf A, Florens L, Washburn MP, Cavasotto CN, Fenyö D, Cuervo AM, Rossi M, Pagano M. The ULK1-FBXW5-SEC23B nexus controls autophagy. Elife. 7. PMID 30596474 DOI: 10.7554/Elife.42253  0.377
2018 Torres-Zelada EF, Stephenson RE, Alpsoy A, Anderson BD, Swanson SK, Florens L, Dykhuizen EC, Washburn MP, Weake VM. The Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science. PMID 30559249 DOI: 10.1242/Jcs.214072  0.445
2018 Choi J, Saraf A, Florens L, Washburn MP, Busino L. PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation. Cell Cycle (Georgetown, Tex.). PMID 30209976 DOI: 10.1080/15384101.2018.1522912  0.384
2018 Banks CAS, Miah S, Adams MK, Eubanks CG, Thornton JL, Florens L, Washburn MP. Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly. Scientific Reports. 8: 13712. PMID 30209338 DOI: 10.1038/S41598-018-32009-W  0.5
2018 Levy MJ, Washburn MP, Florens L. Probing the Sensitivity of the Orbitrap Lumos Mass Spectrometer Using a Standard Reference Protein in a Complex Background. Journal of Proteome Research. PMID 30180573 DOI: 10.1021/Acs.Jproteome.8B00269  0.332
2018 Li S, Xu C, Fu Y, Lei PJ, Yao Y, Yang W, Zhang Y, Washburn MP, Florens L, Jaiswal M, Wu M, Mohan M. DYRK1A interacts with histone acetyl transferase p300 and CBP and localizes to enhancers. Nucleic Acids Research. PMID 30137413 DOI: 10.1093/Nar/Gky754  0.407
2018 Gopalan S, Gibbon DM, Banks CAS, Zhang Y, Florens LA, Washburn MP, Dabas P, Sharma N, Seidel CW, Conaway RC, Conaway JW. Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex. Nucleic Acids Research. PMID 30102332 DOI: 10.1093/Nar/Gky713  0.468
2018 Suganuma T, Swanson SK, Gogol M, Garrett TJ, Conkright-Fincham J, Florens L, Washburn MP, Workman JL. MPTAC Determines APP Fragmentation via Sensing Sulfur Amino Acid Catabolism. Cell Reports. 24: 1585-1596. PMID 30089268 DOI: 10.1016/J.Celrep.2018.07.013  0.524
2018 Vitorino FNL, Montoni F, Moreno JN, de Souza BF, Lopes MC, Cordeiro B, Fonseca CS, Gilmore JM, Sardiu MI, Reis MS, Florens LA, Washburn MP, Armelin HA, da Cunha JPC. FGF-2 Antiproliferative Stimulation Induces Proteomic Dynamic Changes and High Expression of fosB and junB in K-Ras-Driven Mouse Tumor Cells. Proteomics. e1800203. PMID 30035358 DOI: 10.1002/Pmic.201800203  0.354
2018 Choi J, Lee K, Ingvarsdottir K, Bonasio R, Saraf A, Florens L, Washburn MP, Tadros S, Green MR, Busino L. Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2. Nature Cell Biology. 20: 586-596. PMID 29695787 DOI: 10.1038/S41556-018-0084-5  0.334
2018 Banks CAS, Thornton JL, Eubanks CG, Adams MK, Miah S, Boanca G, Liu X, Katt M, Parmely T, Florens LA, Washburn MP. A structured workflow for mapping human Sin3 histone deacetylase complex interactions using Halo-MudPIT AP-MS. Molecular & Cellular Proteomics : McP. PMID 29599190 DOI: 10.1074/Mcp.Tir118.000661  0.491
2018 Tsui C, Inouye C, Levy M, Lu A, Florens L, Washburn MP, Tjian R. dCas9-targeted locus-specific protein isolation method identifies histone gene regulators. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507191 DOI: 10.1073/Pnas.1718844115  0.448
2017 Cheng J, Park DE, Berrios C, White EA, Arora R, Yoon R, Branigan T, Xiao T, Westerling T, Federation A, Zeid R, Strober B, Swanson SK, Florens L, Bradner JE, ... ... Washburn MP, et al. Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis. Plos Pathogens. 13: e1006668. PMID 29028833 DOI: 10.1371/Journal.Ppat.1006668  0.467
2017 Vilhais-Neto GC, Fournier M, Plassat JL, Sardiu ME, Saraf A, Garnier JM, Maruhashi M, Florens L, Washburn MP, Pourquié O. The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry. Nature Communications. 8: 728. PMID 28959017 DOI: 10.1038/S41467-017-00593-6  0.375
2017 Eubanks CG, Dayebgadoh G, Liu X, Washburn MP. Unravelling the biology of chromatin in health and cancer using proteomic approaches. Expert Review of Proteomics. PMID 28895440 DOI: 10.1080/14789450.2017.1374860  0.466
2017 Redwine WB, DeSantis ME, Hollyer I, Htet ZM, Tran PT, Swanson SK, Florens L, Washburn MP, Reck-Peterson SL. The human cytoplasmic dynein interactome reveals novel activators of motility. Elife. 6. PMID 28718761 DOI: 10.7554/Elife.28257  0.38
2017 Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465432 DOI: 10.1073/Pnas.1700128114  0.451
2017 Sardiu ME, Gilmore JM, Groppe B, Florens L, Washburn MP. Identification of Topological Network Modules in Perturbed Protein Interaction Networks. Scientific Reports. 7: 43845. PMID 28272416 DOI: 10.1038/Srep43845  0.335
2017 Dutta A, Sardiu M, Gogol M, Gilmore J, Zhang D, Florens L, Abmayr SM, Washburn MP, Workman JL. Composition and Function of Mutant Swi/Snf Complexes. Cell Reports. 18: 2124-2134. PMID 28249159 DOI: 10.1016/J.Celrep.2017.01.058  0.638
2017 Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias FJ. Mediator structure and rearrangements required for holoenzyme formation. Nature. PMID 28241144 DOI: 10.1038/Nature21393  0.415
2017 Lee J, Shik Choi E, David Seo H, Kang K, Gilmore JM, Florens L, Washburn MP, Choe J, Workman JL, Lee D. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Nature Communications. 8: 14527. PMID 28218250 DOI: 10.1038/Ncomms14527  0.613
2017 Liang K, Volk AG, Haug JS, Marshall SA, Woodfin AR, Bartom ET, Gilmore JM, Florens L, Washburn MP, Sullivan KD, Espinosa JM, Cannova J, Zhang J, Smith ER, Crispino JD, et al. Therapeutic Targeting of MLL Degradation Pathways in MLL-Rearranged Leukemia. Cell. PMID 28065413 DOI: 10.1016/J.Cell.2016.12.011  0.346
2016 Dyer JO, Dutta A, Gogol M, Weake VM, Dialynas G, Wu X, Seidel C, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL. Myeloid Leukemia Factor acts in a chaperone complex to regulate transcription factor stability and gene expression. Journal of Molecular Biology. PMID 27984043 DOI: 10.1016/J.Jmb.2016.10.026  0.651
2016 Terry-Lorenzo RT, Torres VI, Wagh D, Galaz J, Swanson SK, Florens L, Washburn MP, Waites CL, Gundelfinger ED, Reimer RJ, Garner CC. Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon. Plos One. 11: e0167535. PMID 27907191 DOI: 10.1371/Journal.Pone.0167535  0.375
2016 Lan X, Atanassov BS, Li W, Zhang Y, Florens L, Mohan RD, Galardy PJ, Washburn MP, Workman JL, Dent SY. USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B. Cell Reports. 17: 2382-2393. PMID 27880911 DOI: 10.1016/J.Celrep.2016.10.076  0.568
2016 Sato S, Tomomori-Sato C, Tsai KL, Yu X, Sardiu M, Saraf A, Washburn MP, Florens L, Asturias FJ, Conaway RC, Conaway JW. Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme. The Journal of Biological Chemistry. PMID 27821593 DOI: 10.1074/Jbc.M116.756098  0.34
2016 Brannan KW, Jin W, Huelga SC, Banks CA, Gilmore JM, Florens L, Washburn MP, Van Nostrand EL, Pratt GA, Schwinn MK, Daniels DL, Yeo GW. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes. Molecular Cell. PMID 27720645 DOI: 10.1016/J.Molcel.2016.09.003  0.374
2016 Banks CA, Boanca G, Lee ZT, Eubanks CG, Hattem GL, Peak A, Weems LE, Conkright JJ, Florens L, Washburn MP. TNIP2 is a hub protein in the NF-&(kappa)B network with both protein and RNA mediated interactions. Molecular & Cellular Proteomics : McP. PMID 27609421 DOI: 10.1074/Mcp.M116.060509  0.45
2016 Li W, Atanassov BS, Lan X, Mohan RD, Swanson SK, Farria AT, Florens L, Washburn MP, Workman JL, Dent SY. Cytoplasmic ATXN7L3B Interferes with Nuclear Functions of the SAGA Deubiquitinase Module. Molecular and Cellular Biology. PMID 27601583 DOI: 10.1128/Mcb.00193-16  0.639
2016 Saraf A, Cervantes S, Bunnik EM, Ponts NP, Sardiu ME, Chung DD, Prudhomme J, Varberg J, Wen Z, Washburn MP, Florens LA, Le Roch KG. Dynamic and combinatorial landscape of histone modifications during the intra-erythrocytic developmental cycle of the malaria parasite. Journal of Proteome Research. PMID 27291344 DOI: 10.1021/Acs.Jproteome.6B00366  0.395
2016 Gilmore JM, Sardiu ME, Groppe BD, Thornton JL, Liu X, Dayebgadoh G, Banks CA, Slaughter BD, Unruh JR, Workman JL, Florens L, Washburn MP. WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage. Plos One. 11: e0155492. PMID 27248496 DOI: 10.1371/Journal.Pone.0155492  0.556
2016 Huang F, Saraf A, Florens L, Kusch T, Swanson SK, Szerszen LT, Li G, Dutta A, Washburn MP, Abmayr SM, Workman JL. The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition. Genes & Development. PMID 27198229 DOI: 10.1101/Gad.271429.115  0.606
2016 Stegeman R, Spreacker PJ, Swanson SK, Stephenson R, Florens L, Washburn MP, Weake VM. The spliceosomal protein SF3B5 is a novel component of Drosophila SAGA that functions in gene expression independent of splicing. Journal of Molecular Biology. PMID 27185460 DOI: 10.1016/J.Jmb.2016.05.009  0.503
2016 Atanassov BS, Mohan RD, Lan X, Kuang X, Lu Y, Lin K, McIvor E, Li W, Zhang Y, Florens L, Byrum SD, Mackintosh SG, Calhoun-Davis T, Koutelou E, Wang L, ... ... Washburn MP, et al. ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth. Molecular Cell. PMID 27132940 DOI: 10.1016/J.Molcel.2016.03.030  0.565
2016 Washburn MP. There is no human interactome. Genome Biology. 17: 48. PMID 26975421 DOI: 10.1186/S13059-016-0913-4  0.424
2016 Lakshminarasimhan M, Boanca G, Banks CA, Hattem GL, Gabriel AE, Groppe BD, Smoyer C, Malanowski KE, Peak A, Florens L, Washburn MP. Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components. Molecular & Cellular Proteomics : McP. 15: 960-74. PMID 26831523 DOI: 10.1074/Mcp.M115.053165  0.502
2016 Washburn MP, Zhao Y, Garcia BA. Reshaping the chromatin and epigenetic landscapes with quantitative mass spectrometry. Molecular & Cellular Proteomics : McP. PMID 26814188 DOI: 10.1074/Mcp.E116.058602  0.375
2015 Suganuma T, Swanson SK, Florens L, Washburn MP, Workman JL. Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity. Journal of Molecular Cell Biology. PMID 26705305 DOI: 10.1093/Jmcb/Mjv070  0.579
2015 Li S, Swanson SK, Gogol M, Florens L, Washburn MP, Workman JL, Suganuma T. Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism. Molecular Cell. PMID 26527276 DOI: 10.1016/J.Molcel.2015.09.024  0.584
2015 Ouyang J, Yu W, Liu J, Zhang N, Florens L, Chen J, Liu H, Washburn M, Pei D, Xie T. Cyclin-Dependent Kinase-Mediated Sox2 Phosphorylation Enhances the Ability of Sox2 to Establish the Pluripotent State. The Journal of Biological Chemistry. PMID 26139602 DOI: 10.1074/Jbc.M115.658195  0.301
2015 Masuda Y, Takahashi H, Sato S, Tomomori-Sato C, Saraf A, Washburn MP, Florens L, Conaway RC, Conaway JW, Hatakeyama S. TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin. Nature Communications. 6: 7299. PMID 26095369 DOI: 10.1038/Ncomms8299  0.439
2015 Watanabe S, Tan D, Lakshminarasimhan M, Washburn MP, Hong EJ, Walz T, Peterson CL. Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C. Nature Communications. 6: 7108. PMID 25964121 DOI: 10.1038/Ncomms8108  0.337
2015 Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC. Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses. The Journal of Biological Chemistry. 290: 15030-41. PMID 25878247 DOI: 10.1074/Jbc.M114.632794  0.394
2015 Yan J, Hao C, DeLucia M, Swanson S, Florens L, Washburn MP, Ahn J, Skowronski J. CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain. The Journal of Biological Chemistry. 290: 13279-92. PMID 25847232 DOI: 10.1074/Jbc.M115.646588  0.35
2015 Banks CA, Boanca G, Lee ZT, Florens L, Washburn MP. Proteins interacting with cloning scars: a source of false positive protein-protein interactions. Scientific Reports. 5: 8530. PMID 25704442 DOI: 10.1038/Srep08530  0.402
2015 Luo Z, Gao X, Lin C, Smith ER, Marshall SA, Swanson SK, Florens L, Washburn MP, Shilatifard A. Zic2 is an enhancer-binding factor required for embryonic stem cell specification. Molecular Cell. 57: 685-94. PMID 25699711 DOI: 10.1016/J.Molcel.2015.01.007  0.401
2015 Skaar JR, Ferris AL, Wu X, Saraf A, Khanna KK, Florens L, Washburn MP, Hughes SH, Pagano M. The Integrator complex controls the termination of transcription at diverse classes of gene targets. Cell Research. 25: 288-305. PMID 25675981 DOI: 10.1038/Cr.2015.19  0.45
2015 Liang K, Gao X, Gilmore JM, Florens L, Washburn MP, Smith E, Shilatifard A. Characterization of human cyclin-dependent kinase 12 (CDK12) and CDK13 complexes in C-terminal domain phosphorylation, gene transcription, and RNA processing. Molecular and Cellular Biology. 35: 928-38. PMID 25561469 DOI: 10.1128/Mcb.01426-14  0.361
2015 Pagan JK, Marzio A, Jones MJ, Saraf A, Jallepalli PV, Florens L, Washburn MP, Pagano M. Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing. Nature Cell Biology. 17: 31-43. PMID 25503564 DOI: 10.1038/Ncb3076  0.436
2015 Sardiu ME, Gilmore JM, Groppe BD, Herman D, Ramisetty SR, Cai Y, Jin J, Conaway RC, Conaway JW, Florens L, Washburn MP. Conserved abundance and topological features in chromatin-remodeling protein interaction networks. Embo Reports. 16: 116-26. PMID 25427557 DOI: 10.15252/Embr.201439403  0.411
2014 Link AJ, Washburn MP. Analysis of protein composition using multidimensional chromatography and mass spectrometry. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. 78: 23.1.1-23.1.25. PMID 25367006 DOI: 10.1002/0471140864.ps2301s78  0.307
2014 Dutta A, Gogol M, Kim JH, Smolle M, Venkatesh S, Gilmore J, Florens L, Washburn MP, Workman JL. Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions. Genes & Development. 28: 2314-30. PMID 25319830 DOI: 10.1101/Gad.243584.114  0.626
2014 Herz HM, Morgan M, Gao X, Jackson J, Rickels R, Swanson SK, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling. Science (New York, N.Y.). 345: 1065-70. PMID 25170156 DOI: 10.1126/Science.1255104  0.408
2014 Sardiu ME, Smith KT, Groppe BD, Gilmore JM, Saraf A, Egidy R, Peak A, Seidel CW, Florens L, Workman JL, Washburn MP. Suberoylanilide hydroxamic acid (SAHA)-induced dynamics of a human histone deacetylase protein interaction network. Molecular & Cellular Proteomics : McP. 13: 3114-25. PMID 25073741 DOI: 10.1074/Mcp.M113.037127  0.596
2014 Banks CA, Lee ZT, Boanca G, Lakshminarasimhan M, Groppe BD, Wen Z, Hattem GL, Seidel CW, Florens L, Washburn MP. Controlling for gene expression changes in transcription factor protein networks. Molecular & Cellular Proteomics : McP. 13: 1510-22. PMID 24722732 DOI: 10.1074/Mcp.M113.033902  0.468
2014 Ryu HW, Lee DH, Florens L, Swanson SK, Washburn MP, Kwon SH. Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila. Journal of Proteomics. 102: 137-47. PMID 24681131 DOI: 10.1016/J.Jprot.2014.03.016  0.431
2014 Mohan RD, Dialynas G, Weake VM, Liu J, Martin-Brown S, Florens L, Washburn MP, Workman JL, Abmayr SM. Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration. Genes & Development. 28: 259-72. PMID 24493646 DOI: 10.1101/Gad.225151.113  0.622
2014 Renaud M, Praz V, Vieu E, Florens L, Washburn MP, l'Hôte P, Hernandez N. Gene duplication and neofunctionalization: POLR3G and POLR3GL. Genome Research. 24: 37-51. PMID 24107381 DOI: 10.1101/Gr.161570.113  0.388
2014 Lakshminarasimhan M, Washburn MP. Quantitative proteomics characterization of chromatin-remodeling complexes in health and disease Systems Analysis of Chromatin-Related Protein Complexes in Cancer. 2147483647: 177-196. DOI: 10.1007/978-1-4614-7931-4_9  0.404
2013 Hu D, Smith ER, Garruss AS, Mohaghegh N, Varberg JM, Lin C, Jackson J, Gao X, Saraf A, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. The little elongation complex functions at initiation and elongation phases of snRNA gene transcription. Molecular Cell. 51: 493-505. PMID 23932780 DOI: 10.1016/J.Molcel.2013.07.003  0.424
2013 Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, ... ... Washburn MP, et al. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nature Methods. 10: 730-6. PMID 23921808 DOI: 10.1038/Nmeth.2557  0.371
2013 Sela D, Conkright JJ, Chen L, Gilmore J, Washburn MP, Florens L, Conaway RC, Conaway JW. Role for human mediator subunit MED25 in recruitment of mediator to promoters by endoplasmic reticulum stress-responsive transcription factor ATF6α. The Journal of Biological Chemistry. 288: 26179-87. PMID 23864652 DOI: 10.1074/Jbc.M113.496968  0.359
2013 Cox JL, Wilder PJ, Gilmore JM, Wuebben EL, Washburn MP, Rizzino A. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. Plos One. 8: e62857. PMID 23667531 DOI: 10.1371/Journal.Pone.0062857  0.365
2013 Kuchay S, Duan S, Schenkein E, Peschiaroli A, Saraf A, Florens L, Washburn MP, Pagano M. FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade. Nature Cell Biology. 15: 472-80. PMID 23604317 DOI: 10.1038/Ncb2731  0.369
2013 Bonner AM, Hughes SE, Chisholm JA, Smith SK, Slaughter BD, Unruh JR, Collins KA, Friederichs JM, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, Hawley RS. Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains. Proceedings of the National Academy of Sciences of the United States of America. 110: E1222-31. PMID 23479640 DOI: 10.1073/Pnas.1301690110  0.328
2013 Rossi M, Duan S, Jeong YT, Horn M, Saraf A, Florens L, Washburn MP, Antebi A, Pagano M. Regulation of the CRL4(Cdt2) ubiquitin ligase and cell-cycle exit by the SCF(Fbxo11) ubiquitin ligase. Molecular Cell. 49: 1159-66. PMID 23478441 DOI: 10.1016/J.Molcel.2013.02.004  0.432
2013 Mosley AL, Hunter GO, Sardiu ME, Smolle M, Workman JL, Florens L, Washburn MP. Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation. Molecular & Cellular Proteomics : McP. 12: 1530-8. PMID 23418395 DOI: 10.1074/Mcp.M112.024034  0.723
2013 Jeong YT, Rossi M, Cermak L, Saraf A, Florens L, Washburn MP, Sung P, Schildkraut CL, Schildkraut C, Pagano M. FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress. The Journal of Cell Biology. 200: 141-9. PMID 23319600 DOI: 10.1083/Jcb.201209002  0.308
2013 Venkatesh S, Smolle M, Li H, Gogol M, Zhang Y, Laurens F, Washburn MP, Workman JL. Chromatin reassembly following RNA polymerase II transcription Epigenetics & Chromatin. 6: O27. DOI: 10.1186/1756-8935-6-S1-O27  0.606
2012 Fine DA, Rozenblatt-Rosen O, Padi M, Korkhin A, James RL, Adelmant G, Yoon R, Guo L, Berrios C, Zhang Y, Calderwood MA, Velmurgan S, Cheng J, Marto JA, Hill DE, ... ... Washburn MP, et al. Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor. Plos Pathogens. 8: e1002949. PMID 23093934 DOI: 10.1371/Journal.Ppat.1002949  0.385
2012 Banks CA, Kong SE, Washburn MP. Affinity purification of protein complexes for analysis by multidimensional protein identification technology. Protein Expression and Purification. 86: 105-19. PMID 23017740 DOI: 10.1016/J.Pep.2012.09.007  0.468
2012 Smith KT, Sardiu ME, Martin-Brown SA, Seidel C, Mushegian A, Egidy R, Florens L, Washburn MP, Workman JL. Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex. Molecular & Cellular Proteomics : McP. 11: 1815-28. PMID 22984288 DOI: 10.1074/Mcp.M112.020255  0.623
2012 Smolle M, Venkatesh S, Gogol MM, Li H, Zhang Y, Florens L, Washburn MP, Workman JL. Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange. Nature Structural & Molecular Biology. 19: 884-92. PMID 22922743 DOI: 10.1038/Nsmb.2312  0.601
2012 D'Angiolella V, Donato V, Forrester FM, Jeong YT, Pellacani C, Kudo Y, Saraf A, Florens L, Washburn MP, Pagano M. Cyclin F-mediated degradation of ribonucleotide reductase M2 controls genome integrity and DNA repair. Cell. 149: 1023-34. PMID 22632967 DOI: 10.1016/J.Cell.2012.03.043  0.307
2012 Sela D, Chen L, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC. Endoplasmic reticulum stress-responsive transcription factor ATF6α directs recruitment of the Mediator of RNA polymerase II transcription and multiple histone acetyltransferase complexes. The Journal of Biological Chemistry. 287: 23035-45. PMID 22577136 DOI: 10.1074/Jbc.M112.369504  0.422
2012 Luo Z, Lin C, Guest E, Garrett AS, Mohaghegh N, Swanson S, Marshall S, Florens L, Washburn MP, Shilatifard A. The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output. Molecular and Cellular Biology. 32: 2608-17. PMID 22547686 DOI: 10.1128/Mcb.00182-12  0.407
2012 Takeo S, Swanson SK, Nandanan K, Nakai Y, Aigaki T, Washburn MP, Florens L, Hawley RS. Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 6382-9. PMID 22421435 DOI: 10.1073/Pnas.1120367109  0.311
2012 Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, Yamaguchi M, Shiekhattar R, Shilatifard A. Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila. Molecular and Cellular Biology. 32: 1683-93. PMID 22354997 DOI: 10.1128/Mcb.06503-11  0.483
2012 Suganuma T, Mushegian A, Swanson SK, Florens L, Washburn MP, Workman JL. A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component. Molecular & Cellular Proteomics : McP. 11: 90-9. PMID 22345504 DOI: 10.1074/Mcp.M111.015818  0.624
2012 Gao Z, Cox JL, Gilmore JM, Ormsbee BD, Mallanna SK, Washburn MP, Rizzino A. Determination of protein interactome of transcription factor Sox2 in embryonic stem cells engineered for inducible expression of four reprogramming factors. The Journal of Biological Chemistry. 287: 11384-97. PMID 22334693 DOI: 10.1074/Jbc.M111.320143  0.399
2012 Steinberg XP, Hepp MI, Fernández García Y, Suganuma T, Swanson SK, Washburn M, Workman JL, Gutiérrez JL. Human CCAAT/enhancer-binding protein β interacts with chromatin remodeling complexes of the imitation switch subfamily. Biochemistry. 51: 952-62. PMID 22242598 DOI: 10.1021/Bi201593Q  0.615
2012 Zhang DW, Mosley AL, Ramisetty SR, Rodríguez-Molina JB, Washburn MP, Ansari AZ. Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination Journal of Biological Chemistry. 287: 8541-8551. PMID 22235117 DOI: 10.1074/Jbc.M111.335687  0.661
2012 Gilmore JM, Sardiu ME, Venkatesh S, Stutzman B, Peak A, Seidel CW, Workman JL, Florens L, Washburn MP. Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Molecular & Cellular Proteomics : McP. 11: M111.011544. PMID 22199229 DOI: 10.1074/Mcp.M111.011544  0.637
2012 Daniels DL, Méndez J, Mosley AL, Ramisetty SR, Murphy N, Benink H, Wood KV, Urh M, Washburn MP. Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics. Journal of Proteome Research. 11: 564-75. PMID 22149079 DOI: 10.1021/Pr200459C  0.672
2012 Smith KT, Martin-Brown SA, Seidel C, Mushegian A, Egidy R, Florens L, Washburn MP, Workman JL. Abstract LB-267: A role for the Sin3 histone deacetylase complex in cell migration Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-267  0.62
2011 Smith ER, Lin C, Garrett AS, Thornton J, Mohaghegh N, Hu D, Jackson J, Saraf A, Swanson SK, Seidel C, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. The little elongation complex regulates small nuclear RNA transcription. Molecular Cell. 44: 954-65. PMID 22195968 DOI: 10.1016/J.Molcel.2011.12.008  0.42
2011 Ponts N, Saraf A, Chung DW, Harris A, Prudhomme J, Washburn MP, Florens L, Le Roch KG. Unraveling the ubiquitome of the human malaria parasite. The Journal of Biological Chemistry. 286: 40320-30. PMID 21930698 DOI: 10.1074/Jbc.M111.238790  0.337
2011 Sardiu ME, Washburn MP. Construction of protein interaction networks based on the label-free quantitative proteomics. Methods in Molecular Biology (Clifton, N.J.). 781: 71-85. PMID 21877278 DOI: 10.1007/978-1-61779-276-2_5  0.484
2011 Mohan M, Herz HM, Smith ER, Zhang Y, Jackson J, Washburn MP, Florens L, Eissenberg JC, Shilatifard A. The COMPASS family of H3K4 methylases in Drosophila. Molecular and Cellular Biology. 31: 4310-8. PMID 21875999 DOI: 10.1128/Mcb.06092-11  0.424
2011 Costessi A, Mahrour N, Tijchon E, Stunnenberg R, Stoel MA, Jansen PW, Sela D, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC, Stunnenberg HG. The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters. The Embo Journal. 30: 3786-98. PMID 21822215 DOI: 10.1038/Emboj.2011.262  0.451
2011 Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL. Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Genes & Development. 25: 1499-509. PMID 21764853 DOI: 10.1101/Gad.2046211  0.59
2011 Lee KK, Sardiu ME, Swanson SK, Gilmore JM, Torok M, Grant PA, Florens L, Workman JL, Washburn MP. Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes. Molecular Systems Biology. 7: 503. PMID 21734642 DOI: 10.1038/Msb.2011.40  0.646
2011 Takahashi H, Parmely TJ, Sato S, Tomomori-Sato C, Banks CA, Kong SE, Szutorisz H, Swanson SK, Martin-Brown S, Washburn MP, Florens L, Seidel CW, Lin C, Smith ER, Shilatifard A, et al. Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell. 146: 92-104. PMID 21729782 DOI: 10.1016/J.Cell.2011.06.005  0.446
2011 Hao Y, Xu N, Box AC, Schaefer L, Kannan K, Zhang Y, Florens L, Seidel C, Washburn MP, Wiegraebe W, Mak HY. Nuclear cGMP-dependent kinase regulates gene expression via activity-dependent recruitment of a conserved histone deacetylase complex. Plos Genetics. 7: e1002065. PMID 21573134 DOI: 10.1371/Journal.Pgen.1002065  0.462
2011 Sardiu ME, Washburn MP. Building protein-protein interaction networks with proteomics and informatics tools. The Journal of Biological Chemistry. 286: 23645-51. PMID 21566121 DOI: 10.1074/Jbc.R110.174052  0.374
2011 Litovchick L, Florens LA, Swanson SK, Washburn MP, DeCaprio JA. DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly. Genes & Development. 25: 801-13. PMID 21498570 DOI: 10.1101/Gad.2034211  0.429
2011 Shi M, Vivian CJ, Lee KJ, Ge C, Morotomi-Yano K, Manzl C, Bock F, Sato S, Tomomori-Sato C, Zhu R, Haug JS, Swanson SK, Washburn MP, Chen DJ, Chen BPC, et al. Retraction Notice to: DNA-PKcs-PIDDosome: A Nuclear Caspase-2-Activating Complex with Role in G2/M Checkpoint Maintenance Cell. 145: 161. PMID 21458674 DOI: 10.1016/J.Cell.2011.03.015  0.358
2011 Ramisetty SR, Washburn MP. Unraveling the dynamics of protein interactions with quantitative mass spectrometry. Critical Reviews in Biochemistry and Molecular Biology. 46: 216-28. PMID 21438726 DOI: 10.3109/10409238.2011.567244  0.422
2011 Chen L, Cai Y, Jin J, Florens L, Swanson SK, Washburn MP, Conaway JW, Conaway RC. Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling. The Journal of Biological Chemistry. 286: 11283-9. PMID 21303910 DOI: 10.1074/Jbc.M111.222505  0.476
2011 Berdygulova Z, Westblade LF, Florens L, Koonin EV, Chait BT, Ramanculov E, Washburn MP, Darst SA, Severinov K, Minakhin L. Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45. Journal of Molecular Biology. 405: 125-42. PMID 21050864 DOI: 10.1016/J.Jmb.2010.10.049  0.377
2011 Mosley AL, Sardiu ME, Pattenden SG, Workman JL, Florens L, Washburn MP. Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes. Molecular & Cellular Proteomics : McP. 10: M110.000687. PMID 21048197 DOI: 10.1074/Mcp.M110.000687  0.743
2011 Washburn MP. Driving biochemical discovery with quantitative proteomics. Trends in Biochemical Sciences. 36: 170-7. PMID 20880711 DOI: 10.1016/J.Tibs.2010.09.001  0.362
2010 Kim JH, Saraf A, Florens L, Washburn M, Workman JL. Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2. Genes & Development. 24: 2766-71. PMID 21159817 DOI: 10.1101/Gad.1979710  0.626
2010 Kwon SH, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II. Genes & Development. 24: 2133-45. PMID 20889714 DOI: 10.1101/Gad.1959110  0.666
2010 Suganuma T, Mushegian A, Swanson SK, Abmayr SM, Florens L, Washburn MP, Workman JL. The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes. Cell. 142: 726-36. PMID 20813260 DOI: 10.1016/J.Cell.2010.07.045  0.571
2010 Gilmore JM, Washburn MP. Advances in shotgun proteomics and the analysis of membrane proteomes. Journal of Proteomics. 73: 2078-91. PMID 20797458 DOI: 10.1016/J.Jprot.2010.08.005  0.326
2010 Mallanna SK, Ormsbee BD, Iacovino M, Gilmore JM, Cox JL, Kyba M, Washburn MP, Rizzino A. Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate. Stem Cells (Dayton, Ohio). 28: 1715-27. PMID 20687156 DOI: 10.1002/Stem.494  0.396
2010 D'Angiolella V, Donato V, Vijayakumar S, Saraf A, Florens L, Washburn MP, Dynlacht B, Pagano M. SCF(Cyclin F) controls centrosome homeostasis and mitotic fidelity through CP110 degradation. Nature. 466: 138-42. PMID 20596027 DOI: 10.1038/Nature09140  0.336
2010 Mohan M, Herz HM, Takahashi YH, Lin C, Lai KC, Zhang Y, Washburn MP, Florens L, Shilatifard A. Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom). Genes & Development. 24: 574-89. PMID 20203130 DOI: 10.1101/Gad.1898410  0.431
2010 Zhang Y, Wen Z, Washburn MP, Florens L. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Analytical Chemistry. 82: 2272-81. PMID 20166708 DOI: 10.1021/Ac9023999  0.317
2010 Lin C, Smith ER, Takahashi H, Lai KC, Martin-Brown S, Florens L, Washburn MP, Conaway JW, Conaway RC, Shilatifard A. AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. Molecular Cell. 37: 429-37. PMID 20159561 DOI: 10.1016/J.Molcel.2010.01.026  0.429
2010 Smith KT, Martin-Brown SA, Florens L, Washburn MP, Workman JL. Deacetylase inhibitors dissociate the histone-targeting ING2 subunit from the Sin3 complex. Chemistry & Biology. 17: 65-74. PMID 20142042 DOI: 10.1016/J.Chembiol.2009.12.010  0.602
2010 Cai Y, Jin J, Swanson SK, Cole MD, Choi SH, Florens L, Washburn MP, Conaway JW, Conaway RC. Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex. The Journal of Biological Chemistry. 285: 4268-72. PMID 20018852 DOI: 10.1074/Jbc.C109.087981  0.456
2010 Fournier ML, Paulson A, Pavelka N, Mosley AL, Gaudenz K, Bradford WD, Glynn E, Li H, Sardiu ME, Fleharty B, Seidel C, Florens L, Washburn MP. Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin. Molecular & Cellular Proteomics : McP. 9: 271-84. PMID 19955083 DOI: 10.1074/Mcp.M900415-Mcp200  0.65
2009 Weake VM, Swanson SK, Mushegian A, Florens L, Washburn MP, Abmayr SM, Workman JL. A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression. Genes & Development. 23: 2818-23. PMID 20008933 DOI: 10.1101/Gad.1846409  0.668
2009 Sardiu ME, Gilmore JM, Carrozza MJ, Li B, Workman JL, Florens L, Washburn MP. Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics. Plos One. 4: e7310. PMID 19806189 DOI: 10.1371/Journal.Pone.0007310  0.634
2009 Takahashi H, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC. Proteomics reveals a physical and functional link between hepatocyte nuclear factor 4alpha and transcription factor IID. The Journal of Biological Chemistry. 284: 32405-12. PMID 19805548 DOI: 10.1074/Jbc.M109.017954  0.419
2009 Skaar JR, Richard DJ, Saraf A, Toschi A, Bolderson E, Florens L, Washburn MP, Khanna KK, Pagano M. INTS3 controls the hSSB1-mediated DNA damage response. The Journal of Cell Biology. 187: 25-32. PMID 19786574 DOI: 10.1083/Jcb.200907026  0.377
2009 Gottschalk AJ, Timinszky G, Kong SE, Jin J, Cai Y, Swanson SK, Washburn MP, Florens L, Ladurner AG, Conaway JW, Conaway RC. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler Proceedings of the National Academy of Sciences of the United States of America. 106: 13770-13774. PMID 19666485 DOI: 10.1073/Pnas.0906920106  0.434
2009 Zhang Y, Wen Z, Washburn MP, Florens L. Effect of dynamic exclusion duration on spectral count based quantitative proteomics. Analytical Chemistry. 81: 6317-26. PMID 19586016 DOI: 10.1021/Ac9004887  0.328
2009 Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A. Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Molecular and Cellular Biology. 29: 3478-86. PMID 19398585 DOI: 10.1128/Mcb.00013-09  0.414
2009 Mosley AL, Pattenden SG, Carey M, Venkatesh S, Gilmore JM, Florens L, Workman JL, Washburn MP. Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation. Molecular Cell. 34: 168-78. PMID 19394294 DOI: 10.1016/J.Molcel.2009.02.025  0.711
2009 Sardiu ME, Florens L, Washburn MP. Evaluation of clustering algorithms for protein complex and protein interaction network assembly. Journal of Proteome Research. 8: 2944-52. PMID 19317493 DOI: 10.1021/Pr900073D  0.379
2009 Swanson SK, Florens L, Washburn MP. Generation and analysis of multidimensional protein identification technology datasets. Methods in Molecular Biology (Clifton, N.J.). 492: 1-20. PMID 19241024 DOI: 10.1007/978-1-59745-493-3_1  0.352
2009 Lee KK, Swanson SK, Florens L, Washburn MP, Workman JL. Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes. Epigenetics & Chromatin. 2: 2. PMID 19226466 DOI: 10.1186/1756-8935-2-2  0.609
2009 Shi M, Vivian CJ, Lee KJ, Ge C, Morotomi-Yano K, Manzl C, Bock F, Sato S, Tomomori-Sato C, Zhu R, Haug JS, Swanson SK, Washburn MP, Chen DJ, Chen BP, et al. DNA-PKcs-PIDDosome: a nuclear caspase-2-activating complex with role in G2/M checkpoint maintenance. Cell. 136: 508-20. PMID 19203584 DOI: 10.1016/J.Cell.2008.12.021  0.343
2009 Mosley AL, Florens L, Wen Z, Washburn MP. A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. Journal of Proteomics. 72: 110-20. PMID 19038371 DOI: 10.1016/J.Jprot.2008.10.008  0.699
2008 Lin CH, Li B, Swanson S, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL. Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase. Molecular Cell. 32: 696-706. PMID 19061644 DOI: 10.1016/J.Molcel.2008.11.008  0.612
2008 Black JC, Mosley A, Kitada T, Washburn M, Carey M. The SIRT2 deacetylase regulates autoacetylation of p300. Molecular Cell. 32: 449-55. PMID 18995842 DOI: 10.1016/J.Molcel.2008.09.018  0.632
2008 Yao T, Song L, Jin J, Cai Y, Takahashi H, Swanson SK, Washburn MP, Florens L, Conaway RC, Cohen RE, Conaway JW. Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex. Molecular Cell. 31: 909-17. PMID 18922472 DOI: 10.1016/J.Molcel.2008.08.027  0.494
2008 Wu M, Wang PF, Lee JS, Martin-Brown S, Florens L, Washburn M, Shilatifard A. Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS. Molecular and Cellular Biology. 28: 7337-44. PMID 18838538 DOI: 10.1128/Mcb.00976-08  0.454
2008 Washburn MP. Sample preparation and in-solution protease digestion of proteins for chromatography-based proteomic analysis. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.6.1-23.6.11. PMID 18729049 DOI: 10.1002/0471140864.Ps2306S53  0.315
2008 Srivastava S, Swanson SK, Manel N, Florens L, Washburn MP, Skowronski J. Lentiviral Vpx accessory factor targets VprBP/DCAF1 substrate adaptor for cullin 4 E3 ubiquitin ligase to enable macrophage infection. Plos Pathogens. 4: e1000059. PMID 18464893 DOI: 10.1371/Journal.Ppat.1000059  0.434
2008 Suganuma T, Gutiérrez JL, Li B, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding. Nature Structural & Molecular Biology. 15: 364-72. PMID 18327268 DOI: 10.1038/Nsmb.1397  0.65
2008 Savalia D, Westblade LF, Goel M, Florens L, Kemp P, Akulenko N, Pavlova O, Padovan JC, Chait BT, Washburn MP, Ackermann HW, Mushegian A, Gabisonia T, Molineux I, Severinov K. Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage. Journal of Molecular Biology. 377: 774-89. PMID 18294652 DOI: 10.1016/J.Jmb.2007.12.077  0.385
2008 Sardiu ME, Cai Y, Jin J, Swanson SK, Conaway RC, Conaway JW, Florens L, Washburn MP. Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics. Proceedings of the National Academy of Sciences of the United States of America. 105: 1454-9. PMID 18218781 DOI: 10.1073/Pnas.0706983105  0.442
2008 Liu WL, Coleman RA, Grob P, King DS, Florens L, Washburn MP, Geles KG, Yang JL, Ramey V, Nogales E, Tjian R. Structural changes in TAF4b-TFIID correlate with promoter selectivity. Molecular Cell. 29: 81-91. PMID 18206971 DOI: 10.1016/J.Molcel.2007.11.003  0.38
2008 Mahrour N, Redwine WB, Florens L, Swanson SK, Martin-Brown S, Bradford WD, Staehling-Hampton K, Washburn MP, Conaway RC, Conaway JW. Characterization of Cullin-box sequences that direct recruitment of Cul2-Rbx1 and Cul5-Rbx2 modules to Elongin BC-based ubiquitin ligases. The Journal of Biological Chemistry. 283: 8005-13. PMID 18187417 DOI: 10.1074/Jbc.M706987200  0.428
2008 Geisbrecht ER, Haralalka S, Swanson SK, Florens L, Washburn MP, Abmayr SM. Drosophila ELMO/CED-12 interacts with Myoblast city to direct myoblast fusion and ommatidial organization. Developmental Biology. 314: 137-49. PMID 18163987 DOI: 10.1016/J.Ydbio.2007.11.022  0.357
2008 Koutelou E, Sato S, Tomomori-Sato C, Florens L, Swanson SK, Washburn MP, Kokkinaki M, Conaway RC, Conaway JW, Moschonas NK. Neuralized-like 1 (Neurl1) targeted to the plasma membrane by N-myristoylation regulates the Notch ligand Jagged1. The Journal of Biological Chemistry. 283: 3846-53. PMID 18077452 DOI: 10.1074/Jbc.M706974200  0.314
2008 Pavelka N, Fournier ML, Swanson SK, Pelizzola M, Ricciardi-Castagnoli P, Florens L, Washburn MP. Statistical similarities between transcriptomics and quantitative shotgun proteomics data. Molecular & Cellular Proteomics : McP. 7: 631-44. PMID 18029349 DOI: 10.1074/Mcp.M700240-Mcp200  0.353
2007 Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A. Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell. 131: 1084-96. PMID 18083099 DOI: 10.1016/J.Cell.2007.09.046  0.421
2007 Xiang Y, Takeo S, Florens L, Hughes SE, Huo LJ, Gilliland WD, Swanson SK, Teeter K, Schwartz JW, Washburn MP, Jaspersen SL, Hawley RS. The inhibition of polo kinase by matrimony maintains G2 arrest in the meiotic cell cycle. Plos Biology. 5: e323. PMID 18052611 DOI: 10.1371/Journal.Pbio.0050323  0.364
2007 Yuan CC, Zhao X, Florens L, Swanson SK, Washburn MP, Hernandez N. CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription. Molecular and Cellular Biology. 27: 8729-38. PMID 17938208 DOI: 10.1128/Mcb.00846-07  0.441
2007 Cai Y, Jin J, Yao T, Gottschalk AJ, Swanson SK, Wu S, Shi Y, Washburn MP, Florens L, Conaway RC, Conaway JW. YY1 functions with INO80 to activate transcription. Nature Structural & Molecular Biology. 14: 872-4. PMID 17721549 DOI: 10.1038/Nsmb1276  0.42
2007 Fournier ML, Gilmore JM, Martin-Brown SA, Washburn MP. Multidimensional separations-based shotgun proteomics. Chemical Reviews. 107: 3654-86. PMID 17649983 DOI: 10.1021/Cr068279A  0.403
2007 Hrecka K, Gierszewska M, Srivastava S, Kozaczkiewicz L, Swanson SK, Florens L, Washburn MP, Skowronski J. Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle. Proceedings of the National Academy of Sciences of the United States of America. 104: 11778-83. PMID 17609381 DOI: 10.1073/Pnas.0702102104  0.371
2007 Camahort R, Li B, Florens L, Swanson SK, Washburn MP, Gerton JL. Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore. Molecular Cell. 26: 853-65. PMID 17569568 DOI: 10.1016/J.Molcel.2007.05.013  0.411
2007 Gilmore JM, Washburn MP. Deciphering the combinatorial histone code. Nature Methods. 4: 480-1. PMID 17538629 DOI: 10.1038/Nmeth0607-480  0.347
2007 Litovchick L, Sadasivam S, Florens L, Zhu X, Swanson SK, Velmurugan S, Chen R, Washburn MP, Liu XS, DeCaprio JA. Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence. Molecular Cell. 26: 539-51. PMID 17531812 DOI: 10.1016/J.Molcel.2007.04.015  0.457
2007 Chen X, Wurtmann EJ, Van Batavia J, Zybailov B, Washburn MP, Wolin SL. An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans. Genes & Development. 21: 1328-39. PMID 17510283 DOI: 10.1101/Gad.1548207  0.301
2007 Zybailov BL, Florens L, Washburn MP. Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors. Molecular Biosystems. 3: 354-60. PMID 17460794 DOI: 10.1039/B701483J  0.335
2007 Skaar JR, Florens L, Tsutsumi T, Arai T, Tron A, Swanson SK, Washburn MP, DeCaprio JA. PARC and CUL7 form atypical cullin RING ligase complexes. Cancer Research. 67: 2006-14. PMID 17332328 DOI: 10.1158/0008-5472.Can-06-3241  0.458
2007 Banks CA, Kong SE, Spahr H, Florens L, Martin-Brown S, Washburn MP, Conaway JW, Mushegian A, Conaway RC. Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL. The Journal of Biological Chemistry. 282: 5761-9. PMID 17150956 DOI: 10.1074/Jbc.M610393200  0.368
2007 Wood A, Shukla A, Schneider J, Lee JS, Stanton JD, Dzuiba T, Swanson SK, Florens L, Washburn MP, Wyrick J, Bhaumik SR, Shilatifard A. Ctk complex-mediated regulation of histone methylation by COMPASS. Molecular and Cellular Biology. 27: 709-20. PMID 17088385 DOI: 10.1128/Mcb.01627-06  0.489
2006 Schieltz DM, Washburn MP. Digestion of Insoluble Protein Fractions for Multidimensional Protein Identification Technology (MuDPIT) Analysis. Csh Protocols. 2006. PMID 22485951 DOI: 10.1101/Pdb.Prot4556  0.389
2006 Schieltz DM, Washburn MP. Analysis of Complex Protein Mixtures Using Multidimensional Protein Identification Technology (MuDPIT). Csh Protocols. 2006. PMID 22485950 DOI: 10.1101/Pdb.Prot4555  0.35
2006 Schieltz DM, Washburn MP, Hays LG. Analysis of Complex Protein Mixtures Using Nano-LC Coupled to MS/MS. Csh Protocols. 2006. PMID 22485948 DOI: 10.1101/Pdb.Prot4553  0.327
2006 Paoletti AC, Parmely TJ, Tomomori-Sato C, Sato S, Zhu D, Conaway RC, Conaway JW, Florens L, Washburn MP. Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors. Proceedings of the National Academy of Sciences of the United States of America. 103: 18928-33. PMID 17138671 DOI: 10.1073/Pnas.0606379103  0.465
2006 Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP. Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods (San Diego, Calif.). 40: 303-11. PMID 17101441 DOI: 10.1016/J.Ymeth.2006.07.028  0.615
2006 Naryshkina T, Liu J, Florens L, Swanson SK, Pavlov AR, Pavlova NV, Inman R, Minakhin L, Kozyavkin SA, Washburn M, Mushegian A, Severinov K. Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions. Journal of Molecular Biology. 364: 667-77. PMID 17027029 DOI: 10.1016/J.Jmb.2006.08.087  0.344
2006 Guelman S, Suganuma T, Florens L, Weake V, Swanson SK, Washburn MP, Abmayr SM, Workman JL. The essential gene wda encodes a WD40 repeat subunit of Drosophila SAGA required for histone H3 acetylation. Molecular and Cellular Biology. 26: 7178-89. PMID 16980620 DOI: 10.1128/Mcb.00130-06  0.651
2006 Zybailov B, Mosley AL, Sardiu ME, Coleman MK, Florens L, Washburn MP. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. Journal of Proteome Research. 5: 2339-47. PMID 16944946 DOI: 10.1021/Pr060161N  0.634
2006 Yao T, Song L, Xu W, DeMartino GN, Florens L, Swanson SK, Washburn MP, Conaway RC, Conaway JW, Cohen RE. Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1. Nature Cell Biology. 8: 994-1002. PMID 16906146 DOI: 10.1038/Ncb1460  0.397
2006 Florens L, Washburn MP. Proteomic analysis by multidimensional protein identification technology Methods in Molecular Biology (Clifton, N.J.). 328: 159-175. PMID 16785648 DOI: 10.1385/1-59745-026-X:159  0.403
2006 Emran F, Florens L, Ma B, Swanson SK, Washburn MP, Hernandez N. A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes. Gene. 377: 96-108. PMID 16769183 DOI: 10.1016/J.Gene.2006.03.012  0.436
2006 Ruhl DD, Jin J, Cai Y, Swanson S, Florens L, Washburn MP, Conaway RC, Conaway JW, Chrivia JC. Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes. Biochemistry. 45: 5671-7. PMID 16634648 DOI: 10.1021/Bi060043D  0.47
2006 Guelman S, Suganuma T, Florens L, Swanson SK, Kiesecker CL, Kusch T, Anderson S, Yates JR, Washburn MP, Abmayr SM, Workman JL. Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila. Molecular and Cellular Biology. 26: 871-82. PMID 16428443 DOI: 10.1128/Mcb.26.3.871-882.2006  0.663
2006 Jaiswal M, Washburn MP, Zybailov BL. Mass Spectrometry‐based Methods of Proteome Analysis Reviews in Cell Biology and Molecular Medicine. 1: 51-103. DOI: 10.1002/3527600906.Mcb.200400028.Pub2  0.34
2005 Carrozza MJ, Florens L, Swanson SK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex. Biochimica Et Biophysica Acta. 1731: 77-87; discussion 75. PMID 16314178 DOI: 10.1016/J.Bbaexp.2005.09.005  0.66
2005 Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell. 123: 581-92. PMID 16286007 DOI: 10.1016/J.Cell.2005.10.023  0.624
2005 Prochasson P, Florens L, Swanson SK, Washburn MP, Workman JL. The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. Genes & Development. 19: 2534-9. PMID 16264190 DOI: 10.1101/Gad.1341105  0.648
2005 Jin J, Cai Y, Yao T, Gottschalk AJ, Florens L, Swanson SK, Gutiérrez JL, Coleman MK, Workman JL, Mushegian A, Washburn MP, Conaway RC, Conaway JW. A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex. The Journal of Biological Chemistry. 280: 41207-12. PMID 16230350 DOI: 10.1074/Jbc.M509128200  0.629
2005 Zybailov B, Coleman MK, Florens L, Washburn MP. Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling Analytical Chemistry. 77: 6218-6224. PMID 16194081 DOI: 10.1021/Ac050846R  0.324
2005 Schneider J, Wood A, Lee JS, Schuster R, Dueker J, Maguire C, Swanson SK, Florens L, Washburn MP, Shilatifard A. Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression. Molecular Cell. 19: 849-56. PMID 16168379 DOI: 10.1016/J.Molcel.2005.07.024  0.437
2005 Swanson SK, Washburn MP. The continuing evolution of shotgun proteomics. Drug Discovery Today. 10: 719-25. PMID 15896685 DOI: 10.1016/S1359-6446(05)03450-1  0.384
2005 Conaway JW, Florens L, Sato S, Tomomori-Sato C, Parmely TJ, Yao T, Swanson SK, Banks CA, Washburn MP, Conaway RC. The mammalian Mediator complex. Febs Letters. 579: 904-8. PMID 15680972 DOI: 10.1016/J.Febslet.2004.11.031  0.469
2005 Shia WJ, Osada S, Florens L, Swanson SK, Washburn MP, Workman JL. Characterization of the yeast trimeric-SAS acetyltransferase complex. The Journal of Biological Chemistry. 280: 11987-94. PMID 15659401 DOI: 10.1074/Jbc.M500276200  0.659
2005 Lee KK, Florens L, Swanson SK, Washburn MP, Workman JL. The deubiquitylation activity of Ubp8 is dependent upon Sgf11 and its association with the SAGA complex. Molecular and Cellular Biology. 25: 1173-82. PMID 15657442 DOI: 10.1128/Mcb.25.3.1173-1182.2005  0.64
2005 Cai Y, Jin J, Florens L, Swanson SK, Kusch T, Li B, Workman JL, Washburn MP, Conaway RC, Conaway JW. The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes. The Journal of Biological Chemistry. 280: 13665-70. PMID 15647280 DOI: 10.1074/Jbc.M500001200  0.665
2004 Link AJ, Jennings JL, Washburn MP. Analysis of protein composition using multidimensional chromatography and mass spectrometry. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.1. PMID 18429262 DOI: 10.1002/0471140864.Ps2301S34  0.392
2004 Paoletti AC, Zybailov B, Washburn MP. Principles and applications of multidimensional protein identification technology. Expert Review of Proteomics. 1: 275-82. PMID 15966824 DOI: 10.1586/14789450.1.3.275  0.37
2004 Washburn MP. Utilisation of proteomics datasets generated via multidimensional protein identification technology (MudPIT) Briefings in Functional Genomics &Amp; Proteomics. 3: 280-286. PMID 15642190 DOI: 10.1093/Bfgp/3.3.280  0.387
2004 Kusch T, Florens L, Macdonald WH, Swanson SK, Glaser RL, Yates JR, Abmayr SM, Washburn MP, Workman JL. Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. Science (New York, N.Y.). 306: 2084-7. PMID 15528408 DOI: 10.1126/Science.1103455  0.585
2004 Lee KK, Prochasson P, Florens L, Swanson SK, Washburn MP, Workman JL. Proteomic analysis of chromatin-modifying complexes in Saccharomyces cerevisiae identifies novel subunits. Biochemical Society Transactions. 32: 899-903. PMID 15506919 DOI: 10.1042/Bst0320899  0.66
2004 Sato S, Tomomori-Sato C, Parmely TJ, Florens L, Zybailov B, Swanson SK, Banks CA, Jin J, Cai Y, Washburn MP, Conaway JW, Conaway RC. A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. Molecular Cell. 14: 685-91. PMID 15175163 DOI: 10.1016/J.Molcel.2004.05.006  0.484
2004 Tomomori-Sato C, Sato S, Parmely TJ, Banks CA, Sorokina I, Florens L, Zybailov B, Washburn MP, Brower CS, Conaway RC, Conaway JW. A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2. The Journal of Biological Chemistry. 279: 5846-51. PMID 14638676 DOI: 10.1074/Jbc.M312523200  0.434
2003 Washburn MP, Ulaszek RR, Yates JR. Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology Analytical Chemistry. 75: 5054-5061. PMID 14708778 DOI: 10.1021/Ac034120B  0.378
2003 Washburn MP. Soft landing for protein chips Nature Biotechnology. 21: 1156-1157. PMID 14520398 DOI: 10.1038/Nbt1003-1156  0.336
2003 Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, Deciu C, Winzeler E, Yates JR. Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 100: 3107-12. PMID 12626741 DOI: 10.1073/Pnas.0634629100  0.397
2003 Hunter TC, Washburn MP. Integration of chromatography and peptide mass modification for quantitative proteomics Journal of Liquid Chromatography and Related Technologies. 26: 2285-2301. DOI: 10.1081/Jlc-120023247  0.343
2002 Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA, Wolters D, Wu Y, Gardner MJ, Holder AA, et al. A proteomic view of the Plasmodium falciparum life cycle. Nature. 419: 520-6. PMID 12368866 DOI: 10.1038/Nature01107  0.369
2002 Koller A, Washburn MP, Lange BM, Andon NL, Deciu C, Haynes PA, Hays L, Schieltz D, Ulaszek R, Wei J, Wolters D, Yates JR. Proteomic survey of metabolic pathways in rice Proceedings of the National Academy of Sciences of the United States of America. 99: 11969-11974. PMID 12163647 DOI: 10.1073/Pnas.172183199  0.328
2002 MacCoss MJ, McDonald WH, Saraf A, Sadygov R, Clark JM, Tasto JJ, Gould KL, Wolters D, Washburn M, Weiss A, Clark JI, Yates JR. Shotgun identification of protein modifications from protein complexes and lens tissue. Proceedings of the National Academy of Sciences of the United States of America. 99: 7900-5. PMID 12060738 DOI: 10.1073/Pnas.122231399  0.433
2001 Wolters DA, Washburn MP, Yates JR. An automated multidimensional protein identification technology for shotgun proteomics Analytical Chemistry. 73: 5683-5690. PMID 11774908 DOI: 10.1021/Ac010617E  0.324
2001 Washburn MP, Wolters D, Yates JR. Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nature Biotechnology. 19: 242-247. PMID 11231557 DOI: 10.1038/85686  0.401
2000 Washburn MP, Yates JR. Analysis of the microbial proteome Current Opinion in Microbiology. 3: 292-297. PMID 10851159 DOI: 10.1016/S1369-5274(00)00092-8  0.422
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