| Year |
Citation |
Score |
| 2022 |
Parreno V, Bai M, Liu F, Jing J, Olney E, Li G, Wen K, Yang X, Castellucc TB, Kocher JF, Zhou X, Yuan L. Probiotic as Adjuvant Significantly Improves Protection of the Lanzhou Trivalent Rotavirus Vaccine against Heterologous Challenge in a Gnotobiotic Pig Model of Human Rotavirus Infection and Disease. Vaccines. 10. PMID 36146607 DOI: 10.3390/vaccines10091529 |
0.816 |
|
| 2021 |
Kocher J, Castellucci TB, Wen K, Li G, Yang X, Lei S, Jiang X, Yuan L. Simvastatin Reduces Protection and Intestinal T Cell Responses Induced by a Norovirus P Particle Vaccine in Gnotobiotic Pigs. Pathogens (Basel, Switzerland). 10. PMID 34357979 DOI: 10.3390/pathogens10070829 |
0.696 |
|
| 2017 |
Menachery VD, Mitchell HD, Cockrell AS, Gralinski LE, Yount BL, Graham RL, McAnarney ET, Douglas MG, Scobey T, Beall A, Dinnon K, Kocher JF, Hale AE, Stratton KG, Waters KM, et al. MERS-CoV Accessory ORFs Play Key Role for Infection and Pathogenesis. Mbio. 8. PMID 28830941 DOI: 10.1128/Mbio.00665-17 |
0.336 |
|
| 2017 |
Gralinski LE, Menachery VD, Morgan AP, Totura AL, Beall A, Kocher J, Plante J, Harrison-Shostak DC, Schäfer A, Pardo-Manuel de Villena F, Ferris MT, Baric RS. Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice. G3 (Bethesda, Md.). 7: 1653-1663. PMID 28592648 DOI: 10.1534/G3.117.041434 |
0.301 |
|
| 2016 |
Lei S, Ramesh A, Twitchell E, Wen K, Bui T, Weiss M, Yang X, Kocher J, Li G, Giri-Rachman E, Trang NV, Jiang X, Ryan EP, Yuan L. High Protective Efficacy of Probiotics and Rice Bran against Human Norovirus Infection and Diarrhea in Gnotobiotic Pigs. Frontiers in Microbiology. 7: 1699. PMID 27853451 DOI: 10.3389/Fmicb.2016.01699 |
0.756 |
|
| 2016 |
Wang H, Gao K, Wen K, Allen IC, Li G, Zhang W, Kocher J, Yang X, Giri-Rachman E, Li GH, Clark-Deener S, Yuan L. Lactobacillus rhamnosus GG modulates innate signaling pathway and cytokine responses to rotavirus vaccine in intestinal mononuclear cells of gnotobiotic pigs transplanted with human gut microbiota. Bmc Microbiology. 16: 109. PMID 27301272 DOI: 10.1186/S12866-016-0727-2 |
0.807 |
|
| 2016 |
Wen K, Bui T, Weiss M, Li G, Kocher J, Yang X, Jobst PM, Vaught T, Ramsoondar J, Ball S, Clark-Deener S, Ayares D, Yuan L. B-Cell-Deficient and CD8 T-Cell-Depleted Gnotobiotic Pigs for the Study of Human Rotavirus Vaccine-Induced Protective Immune Responses. Viral Immunology. PMID 26824402 DOI: 10.1089/Vim.2015.0105 |
0.816 |
|
| 2015 |
Kocher J, Yuan L. Norovirus vaccines and potential antinorovirus drugs: recent advances and future perspectives. Future Virology. 10: 899-913. PMID 26568768 DOI: 10.2217/Fvl.15.57 |
0.639 |
|
| 2015 |
Yang X, Twitchell E, Li G, Wen K, Weiss M, Kocher J, Lei S, Ramesh A, Ryan EP, Yuan L. High protective efficacy of rice bran against human rotavirus diarrhea via enhancing probiotic growth, gut barrier function, and innate immunity. Scientific Reports. 5: 15004. PMID 26459937 DOI: 10.1038/Srep15004 |
0.731 |
|
| 2015 |
Wen K, Liu F, Li G, Bai M, Kocher J, Yang X, Wang H, Clark-Deener S, Yuan L. Lactobacillus rhamnosus GG Dosage Affects the Adjuvanticity and Protection Against Rotavirus Diarrhea in Gnotobiotic Pigs. Journal of Pediatric Gastroenterology and Nutrition. 60: 834-43. PMID 25564808 DOI: 10.1097/Mpg.0000000000000694 |
0.778 |
|
| 2014 |
Yang X, Li G, Wen K, Bui T, Liu F, Kocher J, Jortner BS, Vonck M, Pelzer K, Deng J, Zhu R, Li Y, Qian Y, Yuan L. A neonatal gnotobiotic pig model of human enterovirus 71 infection and associated immune responses. Emerging Microbes & Infections. 3: e35. PMID 26038741 DOI: 10.1038/Emi.2014.35 |
0.812 |
|
| 2014 |
Zhang H, Wang H, Shepherd M, Wen K, Li G, Yang X, Kocher J, Giri-Rachman E, Dickerman A, Settlage R, Yuan L. Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs. Gut Pathogens. 6: 39. PMID 25349634 DOI: 10.1186/S13099-014-0039-8 |
0.795 |
|
| 2014 |
Yang X, Wen K, Tin C, Li G, Wang H, Kocher J, Pelzer K, Ryan E, Yuan L. Dietary rice bran protects against rotavirus diarrhea and promotes Th1-type immune responses to human rotavirus vaccine in gnotobiotic pigs. Clinical and Vaccine Immunology : Cvi. 21: 1396-403. PMID 25080551 DOI: 10.1128/Cvi.00210-14 |
0.84 |
|
| 2014 |
Kocher J, Bui T, Giri-Rachman E, Wen K, Li G, Yang X, Liu F, Tan M, Xia M, Zhong W, Jiang X, Yuan L. Intranasal P particle vaccine provided partial cross-variant protection against human GII.4 norovirus diarrhea in gnotobiotic pigs. Journal of Virology. 88: 9728-43. PMID 24920797 DOI: 10.1128/Jvi.01249-14 |
0.822 |
|
| 2014 |
Wen K, Tin C, Wang H, Yang X, Li G, Giri-Rachman E, Kocher J, Bui T, Clark-Deener S, Yuan L. Probiotic Lactobacillus rhamnosus GG enhanced Th1 cellular immunity but did not affect antibody responses in a human gut microbiota transplanted neonatal gnotobiotic pig model. Plos One. 9: e94504. PMID 24722168 DOI: 10.1371/Journal.Pone.0094504 |
0.83 |
|
| 2014 |
Liu F, Wen K, Li G, Yang X, Kocher J, Bui T, Jones D, Pelzer K, Clark-Deener S, Yuan L. Dual functions of Lactobacillus acidophilus NCFM as protection against rotavirus diarrhea. Journal of Pediatric Gastroenterology and Nutrition. 58: 169-76. PMID 24126832 DOI: 10.1097/Mpg.0000000000000197 |
0.799 |
|
| 2013 |
Liu F, Li G, Wen K, Wu S, Zhang Y, Bui T, Yang X, Kocher J, Sun J, Jortner B, Yuan L. Lactobacillus rhamnosus GG on rotavirus-induced injury of ileal epithelium in gnotobiotic pigs. Journal of Pediatric Gastroenterology and Nutrition. 57: 750-8. PMID 24280990 DOI: 10.1097/Mpg.0B013E3182A356E1 |
0.787 |
|
| 2013 |
Wu S, Yuan L, Zhang Y, Liu F, Li G, Wen K, Kocher J, Yang X, Sun J. Probiotic Lactobacillus rhamnosus GG mono-association suppresses human rotavirus-induced autophagy in the gnotobiotic piglet intestine. Gut Pathogens. 5: 22. PMID 23924832 DOI: 10.1186/1757-4749-5-22 |
0.754 |
|
| 2013 |
Bui T, Kocher J, Li Y, Wen K, Li G, Liu F, Yang X, LeRoith T, Tan M, Xia M, Zhong W, Jiang X, Yuan L. Median infectious dose of human norovirus GII.4 in gnotobiotic pigs is decreased by simvastatin treatment and increased by age. The Journal of General Virology. 94: 2005-16. PMID 23804568 DOI: 10.1099/Vir.0.054080-0 |
0.809 |
|
| 2012 |
Wen K, Li G, Yang X, Bui T, Bai M, Liu F, Kocher J, Yuan L. CD4+ CD25- FoxP3+ regulatory cells are the predominant responding regulatory T cells after human rotavirus infection or vaccination in gnotobiotic pigs. Immunology. 137: 160-71. PMID 22716916 DOI: 10.1111/J.1365-2567.2012.03617.X |
0.79 |
|
| 2012 |
Wen K, Bui T, Li G, Liu F, Li Y, Kocher J, Yuan L. Characterization of immune modulating functions of γδ T cell subsets in a gnotobiotic pig model of human rotavirus infection. Comparative Immunology, Microbiology and Infectious Diseases. 35: 289-301. PMID 22333156 DOI: 10.1016/J.Cimid.2012.01.010 |
0.599 |
|
| 2012 |
Wen K, Li G, Bui T, Liu F, Li Y, Kocher J, Lin L, Yang X, Yuan L. High dose and low dose Lactobacillus acidophilus exerted differential immune modulating effects on T cell immune responses induced by an oral human rotavirus vaccine in gnotobiotic pigs. Vaccine. 30: 1198-207. PMID 22178726 DOI: 10.1016/J.Vaccine.2011.11.107 |
0.814 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2018 |
Kocher JF, Lindesmith LC, Debbink K, Beall A, Mallory ML, Yount BL, Graham RL, Huynh J, Gates JE, Donaldson EF, Baric RS. Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles. Mbio. 9. PMID 29789360 DOI: 10.1128/Mbio.00869-18 |
0.256 |
|
| 2022 |
Kocher J, Arwood L, Roberts RC, Henson I, Annas A, Emerson D, Stasko N, Fulcher ML, Brotton M, Randell SH, Cockrell AS. Visible blue light inactivates SARS-CoV-2 variants and inhibits Delta replication in differentiated human airway epithelia. Biorxiv : the Preprint Server For Biology. PMID 35132416 DOI: 10.1101/2022.01.25.477616 |
0.244 |
|
| 2017 |
Lindesmith LC, Kocher JF, Donaldson EF, Debbink K, Mallory ML, Swann EW, Brewer-Jenson PD, Baric RS. Emergence of Novel Human Norovirus GII.17 Strains Correlates with Changes in Blockade Antibody Epitopes. The Journal of Infectious Diseases. PMID 28973354 DOI: 10.1093/Infdis/Jix385 |
0.224 |
|
| 2017 |
Douglas MG, Kocher JF, Scobey T, Baric RS, Cockrell AS. Adaptive evolution influences the infectious dose of MERS-CoV necessary to achieve severe respiratory disease. Virology. PMID 29277291 DOI: 10.1016/J.Virol.2017.12.006 |
0.219 |
|
| 2021 |
Stasko N, Kocher JF, Annas A, Henson I, Seitz TS, Miller JM, Arwood L, Roberts RC, Womble TM, Keller EG, Emerson S, Bergmann M, Sheesley ANY, Strong RJ, Hurst BL, et al. Visible blue light inhibits infection and replication of SARS-CoV-2 at doses that are well-tolerated by human respiratory tissue. Scientific Reports. 11: 20595. PMID 34663881 DOI: 10.1038/s41598-021-99917-2 |
0.212 |
|
| 2022 |
Stasko N, Cockrell AS, Kocher JF, Henson I, Emerson D, Wang Y, Smith JR, Henderson NH, Wood H, Bradrick SS, Jones T, Santander J, McNeil JG. A randomized, controlled, feasibility study of RD-X19 in subjects with mild-to-moderate COVID-19 in the outpatient setting. Clinical and Translational Science. PMID 35137532 DOI: 10.1111/cts.13249 |
0.201 |
|
| 2010 |
Garoma T, Kocher J. Investigation of surfactant-modified activated carbon for recycled water disinfection. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 62: 1755-66. PMID 20962390 DOI: 10.2166/wst.2010.458 |
0.141 |
|
| 2008 |
Turner ST, Bailey KR, Fridley BL, Chapman AB, Schwartz GL, Chai HS, Sicotte H, Kocher JP, Rodin AS, Boerwinkle E. Genomic association analysis suggests chromosome 12 locus influencing antihypertensive response to thiazide diuretic. Hypertension. 52: 359-65. PMID 18591461 DOI: 10.1161/Hypertensionaha.107.104273 |
0.128 |
|
| 2010 |
Shahryarinejad A, Vardy MD, Filmar G, Walter ME, Kocher J. Sacral Neuromodulator InterStim Surgical Site Infection: Two Case Reports. Female Pelvic Medicine & Reconstructive Surgery. 16: 362-4. PMID 22453623 DOI: 10.1097/SPV.0b013e3181f5abe2 |
0.126 |
|
| 2010 |
Kalari KR, Hebbring SJ, Chai HS, Li L, Kocher JP, Wang L, Weinshilboum RM. Copy number variation and cytidine analogue cytotoxicity: a genome-wide association approach. Bmc Genomics. 11: 357. PMID 20525348 DOI: 10.1186/1471-2164-11-357 |
0.121 |
|
| 2022 |
Stockslager MA, Kocher JF, Arwood L, Stasko N, McDonald RA, Tapsak MA, Emerson D. Efficacy and hazards of 425 nm oral cavity light dosing to inactivate SARS-CoV-2. Journal of Dentistry. 123: 104203. PMID 35724941 DOI: 10.1016/j.jdent.2022.104203 |
0.12 |
|
| 2014 |
Ansell SM, Hodge LS, Secreto FJ, Manske M, Braggio E, Price-Troska T, Ziesmer S, Li Y, Johnson SH, Hart SN, Kocher JP, Vasmatzis G, Chanan-Kahn A, Gertz M, Fonseca R, et al. Activation of TAK1 by MYD88 L265P drives malignant B-cell Growth in non-Hodgkin lymphoma. Blood Cancer Journal. 4: e183. PMID 24531446 DOI: 10.1038/Bcj.2014.4 |
0.113 |
|
| 1993 |
Zurn AD, Fauquet M, Shaw P, Kocher J. The neuropeptide VIP regulates the expression of the tyrosine hydroxylase gene in cultured avian sympathetic neurons. Brain Research. Molecular Brain Research. 20: 125-9. PMID 7902953 |
0.106 |
|
| 2017 |
Li MJ, Li M, Liu Z, Yan B, Pan Z, Huang D, Liang Q, Ying D, Xu F, Yao H, Wang P, Kocher JA, Xia Z, Sham PC, Liu JS, et al. cepip: context-dependent epigenomic weighting for prioritization of regulatory variants and disease-associated genes. Genome Biology. 18: 52. PMID 28302177 DOI: 10.1186/S13059-017-1177-3 |
0.104 |
|
| 1965 |
KOCHER J. [PATHOLOGY OF THE DISPLACED PERSON, A BURNING PRESENT-DAY PROBLEM]. Praxis. 54: 473-8. PMID 14310554 |
0.101 |
|
| 2013 |
Reese SE, Archer KJ, Therneau TM, Atkinson EJ, Vachon CM, de Andrade M, Kocher JP, Eckel-Passow JE. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis. Bioinformatics (Oxford, England). 29: 2877-83. PMID 23958724 DOI: 10.1093/Bioinformatics/Btt480 |
0.097 |
|
| 2012 |
Ruan X, Kocher JP, Pommier Y, Liu H, Reinhold WC. Mass homozygotes accumulation in the NCI-60 cancer cell lines as compared to HapMap Trios, and relation to fragile site location. Plos One. 7: e31628. PMID 22347499 DOI: 10.1371/journal.pone.0031628 |
0.095 |
|
| 2016 |
Li MJ, Pan Z, Liu Z, Wu J, Wang P, Zhu Y, Xu F, Xia Z, Sham PC, Kocher JA, Li M, Liu JS, Wang J. Predicting regulatory variants with composite statistic. Bioinformatics (Oxford, England). PMID 27273672 DOI: 10.1093/Bioinformatics/Btw288 |
0.095 |
|
| 2015 |
Chen L, Liu H, Kocher JP, Li H, Chen J. glmgraph: an R package for variable selection and predictive modeling of structured genomic data. Bioinformatics (Oxford, England). 31: 3991-3. PMID 26315909 DOI: 10.1093/bioinformatics/btv497 |
0.088 |
|
| 2014 |
Ruan X, Liu H, Boardman L, Kocher JP. Genome-wide analysis of loss of heterozygosity in breast infiltrating ductal carcinoma distant normal tissue highlights arm specific enrichment and expansion across tumor stages. Plos One. 9: e95783. PMID 24748104 DOI: 10.1371/journal.pone.0095783 |
0.088 |
|
| 2013 |
Patowary A, Purkanti R, Singh M, Chauhan R, Singh AR, Swarnkar M, Singh N, Pandey V, Torroja C, Clark MD, Kocher JP, Clark KJ, Stemple DL, Klee EW, Ekker SC, et al. A sequence-based variation map of zebrafish. Zebrafish. 10: 15-20. PMID 23590399 DOI: 10.1089/Zeb.2012.0848 |
0.086 |
|
| 2015 |
Li MJ, Liu Z, Wang P, Wong MP, Nelson MR, Kocher JA, Yeager M, Sham PC, Chanock SJ, Xia Z, Wang J. GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. Nucleic Acids Research. PMID 26615194 DOI: 10.1093/Nar/Gkv1317 |
0.084 |
|
| 2014 |
Sakuma T, Davila JI, Malcolm JA, Kocher JP, Tonne JM, Ikeda Y. Murine leukemia virus uses NXF1 for nuclear export of spliced and unspliced viral transcripts. Journal of Virology. 88: 4069-82. PMID 24478440 DOI: 10.1128/Jvi.03584-13 |
0.083 |
|
| 2011 |
Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines. Nucleic Acids Research. 39: e100. PMID 21622959 DOI: 10.1093/Nar/Gkr362 |
0.081 |
|
| 1992 |
Rooman MJ, Kocher JP, Wodak SJ. Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions. Biochemistry. 31: 10226-38. PMID 1420144 DOI: 10.1021/Bi00157A009 |
0.08 |
|
| 1992 |
Gupta I, Kocher J, Miller AJ, Weisholtz SJ, Perz J, Scully M. Mycobacterium haemophilum osteomyelitis in an AIDS patient. New Jersey Medicine : the Journal of the Medical Society of New Jersey. 89: 201-2. PMID 1574200 |
0.079 |
|
| 2014 |
Middha S, Baheti S, Hart SN, Kocher JP. From days to hours: reporting clinically actionable variants from whole genome sequencing. Plos One. 9: e86803. PMID 24505267 DOI: 10.1371/Journal.Pone.0086803 |
0.077 |
|
| 2015 |
Chen J, Just AC, Schwartz J, Hou L, Jafari N, Sun Z, Kocher JA, Baccarelli A, Lin X. CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies. Bioinformatics (Oxford, England). PMID 26449931 DOI: 10.1093/Bioinformatics/Btv577 |
0.077 |
|
| 2015 |
Du J, Aleff RA, Soragni E, Kalari K, Nie J, Tang X, Davila J, Kocher JP, Patel SV, Gottesfeld JM, Baratz KH, Wieben ED. RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy. The Journal of Biological Chemistry. 290: 5979-90. PMID 25593321 DOI: 10.1074/Jbc.M114.621607 |
0.076 |
|
| 2014 |
Li X, Martinez-Fernandez A, Hartjes KA, Kocher JPA, Olson TM, Terzic A, Nelson TJ. Transcriptional atlas of cardiogenesis maps congenital heart disease interactome Physiological Genomics. 46: 482-495. PMID 24803680 DOI: 10.1152/Physiolgenomics.00015.2014 |
0.074 |
|
| 2014 |
Borad MJ, Champion MD, Egan JB, Liang WS, Fonseca R, Bryce AH, McCullough AE, Barrett MT, Hunt K, Patel MD, Young SW, Collins JM, Silva AC, Condjella RM, Block M, ... ... Kocher JP, et al. Integrated genomic characterization reveals novel, therapeutically relevant drug targets in FGFR and EGFR pathways in sporadic intrahepatic cholangiocarcinoma. Plos Genetics. 10: e1004135. PMID 24550739 DOI: 10.1371/Journal.Pgen.1004135 |
0.073 |
|
| 2012 |
Arvizo RR, Giri K, Moyano D, Miranda OR, Madden B, McCormick DJ, Bhattacharya R, Rotello VM, Kocher JP, Mukherjee P. Identifying new therapeutic targets via modulation of protein corona formation by engineered nanoparticles. Plos One. 7: e33650. PMID 22442705 DOI: 10.1371/Journal.Pone.0033650 |
0.072 |
|
| 2006 |
Washington EL, Shen JJ, Kocher J, Moseley CB. Care patterns for affective psychosis across diverse ethnicities: Exploring potential contributors to complications and emergency room utilization Ethnicity and Disease. 16: 712-717. PMID 16937609 |
0.071 |
|
| 2016 |
Nair AA, Niu N, Tang X, Thompson KJ, Wang L, Kocher JP, Subramanian S, Kalari KR. Circular RNAs and their associations with breast cancer subtypes. Oncotarget. PMID 27829232 DOI: 10.18632/Oncotarget.13134 |
0.069 |
|
| 2011 |
Sun Z, Chai HS, Wu Y, White WM, Donkena KV, Klein CJ, Garovic VD, Therneau TM, Kocher JP. Batch effect correction for genome-wide methylation data with Illumina Infinium platform. Bmc Medical Genomics. 4: 84. PMID 22171553 DOI: 10.1186/1755-8794-4-84 |
0.068 |
|
| 2014 |
Giri K, Shameer K, Zimmermann MT, Saha S, Chakraborty PK, Sharma A, Arvizo RR, Madden BJ, Mccormick DJ, Kocher JP, Bhattacharya R, Mukherjee P. Understanding protein-nanoparticle interaction: a new gateway to disease therapeutics. Bioconjugate Chemistry. 25: 1078-90. PMID 24831101 DOI: 10.1021/Bc500084F |
0.067 |
|
| 2014 |
Kocher JJ, Selby TD. Antibiotics for sore throat. American Family Physician. 90: 23-4. PMID 25077497 |
0.066 |
|
| 2014 |
Klein CJ, Middha S, Duan X, Wu Y, Litchy WJ, Gu W, Dyck PJ, Gavrilova RH, Smith DI, Kocher JP, Dyck PJ. Application of whole exome sequencing in undiagnosed inherited polyneuropathies. Journal of Neurology, Neurosurgery, and Psychiatry. 85: 1265-72. PMID 24604904 DOI: 10.1136/Jnnp-2013-306740 |
0.066 |
|
| 2003 |
Litherland SA, She JX, Schatz D, Fuller K, Hutson AD, Peng RH, Li Y, Grebe KM, Whittaker DS, Bahjat K, Hopkins D, Fang Q, Spies PD, North K, Wasserfall C, ... ... Kocher J, et al. Aberrant monocyte prostaglandin synthase 2 (PGS2) expression in type 1 diabetes before and after disease onset. Pediatric Diabetes. 4: 10-8. PMID 14655518 DOI: 10.1034/J.1399-5448.2003.00042.X |
0.065 |
|
| 2015 |
Sun Z, Cunningham J, Slager S, Kocher JP. Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis. Epigenomics. PMID 26366945 DOI: 10.2217/epi.15.21 |
0.064 |
|
| 2009 |
Chai HS, Sicotte H, Bailey KR, Turner ST, Asmann YW, Kocher JP. GLOSSI: a method to assess the association of genetic loci-sets with complex diseases. Bmc Bioinformatics. 10: 102. PMID 19344520 DOI: 10.1186/1471-2105-10-102 |
0.062 |
|
| 2014 |
Wang L, Chen J, Wang C, Uusküla-Reimand L, Chen K, Medina-Rivera A, Young EJ, Zimmermann MT, Yan H, Sun Z, Zhang Y, Wu ST, Huang H, Wilson MD, Kocher JP, et al. MACE: model based analysis of ChIP-exo. Nucleic Acids Research. 42: e156. PMID 25249628 DOI: 10.1093/Nar/Gku846 |
0.061 |
|
| 1986 |
de Vries JX, Walter-Sack I, van de Loo A, Kocher J. Determination of benzarone in human plasma and urine by high-performance liquid chromatography and gas chromatography-mass spectrometry. Identification of the conjugates. Journal of Chromatography. 382: 167-74. PMID 3782383 |
0.06 |
|
| 1994 |
Kocher JP, Rooman MJ, Wodak SJ. Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches. Journal of Molecular Biology. 235: 1598-613. PMID 8107094 DOI: 10.1006/Jmbi.1994.1109 |
0.06 |
|
| 2021 |
Feng S, Heath E, Jefferson B, Joslyn C, Kvinge H, Mitchell HD, Praggastis B, Eisfeld AJ, Sims AC, Thackray LB, Fan S, Walters KB, Halfmann PJ, Westhoff-Smith D, Tan Q, ... ... Kocher JF, et al. Hypergraph models of biological networks to identify genes critical to pathogenic viral response. Bmc Bioinformatics. 22: 287. PMID 34051754 DOI: 10.1186/s12859-021-04197-2 |
0.059 |
|
| 2013 |
Kocher J. Prevention of herpes zoster in older adults. American Family Physician. 88: 578. PMID 24364633 |
0.057 |
|
| 2013 |
Mahoney DW, Therneau TM, Anderson SK, Jen J, Kocher JP, Reinholz MM, Perez EA, Eckel-Passow JE. Quality assessment metrics for whole genome gene expression profiling of paraffin embedded samples. Bmc Research Notes. 6: 33. PMID 23360712 DOI: 10.1186/1756-0500-6-33 |
0.057 |
|
| 2014 |
Tang X, Baheti S, Shameer K, Thompson KJ, Wills Q, Niu N, Holcomb IN, Boutet SC, Ramakrishnan R, Kachergus JM, Kocher JP, Weinshilboum RM, Wang L, Thompson EA, Kalari KR. The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data. Nucleic Acids Research. 42: e172. PMID 25352556 DOI: 10.1093/Nar/Gku1005 |
0.057 |
|
| 2015 |
Chien J, Sicotte H, Fan JB, Humphray S, Cunningham JM, Kalli KR, Oberg AL, Hart SN, Li Y, Davila JI, Baheti S, Wang C, Dietmann S, Atkinson EJ, Asmann YW, ... ... Kocher JP, et al. TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer. Nucleic Acids Research. PMID 25916844 DOI: 10.1093/Nar/Gkv111 |
0.056 |
|
| 2014 |
Sun Z, Wu Y, Ordog T, Baheti S, Nie J, Duan X, Hojo K, Kocher JP, Dyck PJ, Klein CJ. Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E. Epigenetics : Official Journal of the Dna Methylation Society. 9: 1184-93. PMID 25033457 DOI: 10.4161/Epi.29676 |
0.056 |
|
| 2013 |
Wang L, Park HJ, Dasari S, Wang S, Kocher JP, Li W. CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic Acids Research. 41: e74. PMID 23335781 DOI: 10.1093/Nar/Gkt006 |
0.054 |
|
| 2014 |
Wieben ED, Aleff RA, Eckloff BW, Atkinson EJ, Baheti S, Middha S, Brown WL, Patel SV, Kocher JP, Baratz KH. Comprehensive assessment of genetic variants within TCF4 in Fuchs' endothelial corneal dystrophy. Investigative Ophthalmology & Visual Science. 55: 6101-7. PMID 25168903 DOI: 10.1167/Iovs.14-14958 |
0.054 |
|
| 2014 |
Seitz AL, Kocher JH, Uhl TL. Immediate effects and short-term retention of multi-modal instruction compared to written only on muscle activity during the prone horizontal abduction exercise in individuals with shoulder pain. Journal of Electromyography and Kinesiology : Official Journal of the International Society of Electrophysiological Kinesiology. 24: 666-74. PMID 24993668 DOI: 10.1016/J.Jelekin.2014.05.006 |
0.053 |
|
| 2015 |
Wang L, Huang H, Dougherty G, Zhao Y, Hossain A, Kocher JP. Epidaurus: aggregation and integration analysis of prostate cancer epigenome. Nucleic Acids Research. 43: e7. PMID 25378314 DOI: 10.1093/nar/gku1079 |
0.052 |
|
| 2012 |
Dutta T, Chai HS, Ward LE, Ghosh A, Persson XM, Ford GC, Kudva YC, Sun Z, Asmann YW, Kocher JP, Nair KS. Concordance of changes in metabolic pathways based on plasma metabolomics and skeletal muscle transcriptomics in type 1 diabetes. Diabetes. 61: 1004-16. PMID 22415876 DOI: 10.2337/Db11-0874 |
0.051 |
|
| 2001 |
Lee C, Maeng JS, Kocher JP, Lee B, Yu MH. Cavities of alpha(1)-antitrypsin that play structural and functional roles. Protein Science : a Publication of the Protein Society. 10: 1446-53. PMID 11420446 DOI: 10.1110/ps.840101 |
0.051 |
|
| 2009 |
Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, Kocher JP. 3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. Bmc Genomics. 10: 531. PMID 19917133 DOI: 10.1186/1471-2164-10-531 |
0.05 |
|
| 1999 |
Prévost M, Kocher JP. Structural characterization by computer experiments of the lipid-free LDL-receptor-binding domain of apolipoprotein E. Protein Engineering. 12: 475-83. PMID 10388844 |
0.047 |
|
| 2015 |
Sun Z, Prodduturi N, Sun SY, Thompson EA, Kocher JA. Chromosome X genomic and epigenomic aberrations and clinical implications in breast cancer by base resolution profiling. Epigenomics. 1-12. PMID 26039248 DOI: 10.2217/epi.15.43 |
0.047 |
|
| 2012 |
Kalari KR, Rossell D, Necela BM, Asmann YW, Nair A, Baheti S, Kachergus JM, Younkin CS, Baker T, Carr JM, Tang X, Walsh MP, Chai HS, Sun Z, Hart SN, ... ... Kocher JP, et al. Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations. Frontiers in Oncology. 2: 12. PMID 22655260 DOI: 10.3389/Fonc.2012.00012 |
0.045 |
|
| 2013 |
Klein CJ, Wu Y, Duan X, Middha S, Dawson BD, Kocher JP, Dyck PJ. Novel SOD1 mutation discovered in atypical ALS by whole exome sequencing. Journal of Neurology, Neurosurgery, and Psychiatry. 84: 943-4. PMID 23744890 DOI: 10.1136/Jnnp-2013-305400 |
0.045 |
|
| 2016 |
Sun Z, Bhagwate A, Prodduturi N, Yang P, Kocher JA. Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations. Briefings in Bioinformatics. PMID 27473065 DOI: 10.1093/bib/bbw069 |
0.045 |
|
| 2015 |
Kocher J, Adams P. Immediate-release methylphenidate for the treatment of ADHD in adults. American Family Physician. 91: 445-6. PMID 25884744 |
0.044 |
|
| 2016 |
Baheti S, Kanwar R, Goelzenleuchter M, Kocher JP, Beutler AS, Sun Z. Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data. Bmc Genomics. 17: 149. PMID 26922377 DOI: 10.1186/s12864-016-2494-8 |
0.043 |
|
| 2014 |
Yan H, Evans J, Kalmbach M, Moore R, Middha S, Luban S, Wang L, Bhagwate A, Li Y, Sun Z, Chen X, Kocher JP. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. Bmc Bioinformatics. 15: 280. PMID 25128017 DOI: 10.1186/1471-2105-15-280 |
0.043 |
|
| 2012 |
Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP. TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinformatics (Oxford, England). 28: 277-8. PMID 22088845 DOI: 10.1093/Bioinformatics/Btr612 |
0.043 |
|
| 2014 |
Wang C, Davila JI, Baheti S, Bhagwate AV, Wang X, Kocher JP, Slager SL, Feldman AL, Novak AJ, Cerhan JR, Thompson EA, Asmann YW. RVboost: RNA-seq variants prioritization using a boosting method. Bioinformatics (Oxford, England). 30: 3414-6. PMID 25170027 DOI: 10.1093/Bioinformatics/Btu577 |
0.04 |
|
| 1991 |
Rooman MJ, Kocher JP, Wodak SJ. Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions. Journal of Molecular Biology. 221: 961-79. PMID 1942039 DOI: 10.1016/0022-2836(91)80186-X |
0.04 |
|
| 2014 |
Dasari S, Theis JD, Vrana JA, Zenka RM, Zimmermann MT, Kocher JP, Highsmith WE, Kurtin PJ, Dogan A. Clinical proteome informatics workbench detects pathogenic mutations in hereditary amyloidoses. Journal of Proteome Research. 13: 2352-8. PMID 24650283 DOI: 10.1021/Pr4011475 |
0.04 |
|
| 2011 |
Bielinski SJ, Chai HS, Pathak J, Talwalkar JA, Limburg PJ, Gullerud RE, Sicotte H, Klee EW, Ross JL, Kocher JP, Kullo IJ, Heit JA, Petersen GM, de Andrade M, Chute CG. Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. Mayo Clinic Proceedings. 86: 606-14. PMID 21646302 DOI: 10.4065/Mcp.2011.0178 |
0.04 |
|
| 2015 |
Ravikumar KE, Wagholikar KB, Li D, Kocher JP, PhD HL. Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. Bmc Bioinformatics. 16: 185. PMID 26047637 DOI: 10.1186/S12859-015-0609-X |
0.038 |
|
| 2014 |
Zhao H, Sun Z, Wang J, Huang H, Kocher JP, Wang L. CrossMap: a versatile tool for coordinate conversion between genome assemblies. Bioinformatics (Oxford, England). 30: 1006-7. PMID 24351709 DOI: 10.1093/bioinformatics/btt730 |
0.038 |
|
| 2013 |
Hart SN, Therneau TM, Zhang Y, Poland GA, Kocher JP. Calculating sample size estimates for RNA sequencing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 970-8. PMID 23961961 DOI: 10.1089/cmb.2012.0283 |
0.037 |
|
| 2013 |
Sun Z, Asmann YW, Nair A, Zhang Y, Wang L, Kalari KR, Bhagwate AV, Baker TR, Carr JM, Kocher JP, Perez EA, Thompson EA. Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol. Plos One. 8: e71745. PMID 23977132 DOI: 10.1371/Journal.Pone.0071745 |
0.037 |
|
| 2015 |
Hart SN, Duffy P, Quest DJ, Hossain A, Meiners MA, Kocher JP. VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files. Briefings in Bioinformatics. PMID 26210358 DOI: 10.1093/bib/bbv051 |
0.036 |
|
| 2015 |
Wang L, Nie JJ, Kocher JP. PVAAS: identify variants associated with aberrant splicing from RNA-seq. Bioinformatics (Oxford, England). 31: 1668-70. PMID 25573917 DOI: 10.1093/bioinformatics/btv001 |
0.035 |
|
| 2015 |
Wang Y, Cao Y, Yamada S, Thirunavukkarasu M, Nin V, Joshi M, Rishi MT, Bhattacharya S, Camacho-Pereira J, Sharma AK, Shameer K, Kocher JP, Sanchez JA, Wang E, Hoeppner LH, et al. Cardiomyopathy and Worsened Ischemic Heart Failure in SM22-α Cre-Mediated Neuropilin-1 Null Mice: Dysregulation of PGC1α and Mitochondrial Homeostasis. Arteriosclerosis, Thrombosis, and Vascular Biology. 35: 1401-12. PMID 25882068 DOI: 10.1161/Atvbaha.115.305566 |
0.034 |
|
| 2008 |
Hwang T, Sicotte H, Tian Z, Wu B, Kocher JP, Wigle DA, Kumar V, Kuang R. Robust and efficient identification of biomarkers by classifying features on graphs. Bioinformatics (Oxford, England). 24: 2023-9. PMID 18653521 DOI: 10.1093/Bioinformatics/Btn383 |
0.034 |
|
| 2015 |
Hart SN, Moore RM, Zimmermann MT, Oliver GR, Egan JB, Bryce AH, Kocher JP. PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data. Peerj. 3: e970. PMID 26038725 DOI: 10.7717/Peerj.970 |
0.032 |
|
| 1982 |
Foerster MH, Kocher J. [A new indirect binocular spectacle ophthalmoscope]. Klinische Monatsblatter Fur Augenheilkunde. 180: 575-7. PMID 7132187 DOI: 10.1055/s-2008-1055154 |
0.032 |
|
| 1967 |
Kocher J. [Prematurity, a problem of ever increasing importance]. Praxis. 56: 1315-20. PMID 5632955 |
0.031 |
|
| 1977 |
Kocher JE. Socio-economic development and fertility change in rural Africa. Food Research Institute Studies (Stanford, Calif. : 1975). 16: 63-76. PMID 11614487 |
0.031 |
|
| 2011 |
Norgan AP, Coffman PK, Kocher JP, Katzmann DJ, Sosa CP. Multilevel Parallelization of AutoDock 4.2. Journal of Cheminformatics. 3: 12. PMID 21527034 DOI: 10.1186/1758-2946-3-12 |
0.031 |
|
| 2016 |
Wang L, Nie J, Sicotte H, Li Y, Eckel-Passow JE, Dasari S, Vedell PT, Barman P, Wang L, Weinshiboum R, Jen J, Huang H, Kohli M, Kocher JP. Measure transcript integrity using RNA-seq data. Bmc Bioinformatics. 17: 58. PMID 26842848 DOI: 10.1186/S12859-016-0922-Z |
0.031 |
|
| 1983 |
Kocher JE. Supply-demand disequilibria and fertility change in Africa: toward a more appropriate economic approach. Social Biology. 30: 41-58. PMID 6658484 |
0.03 |
|
| 2012 |
Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y, Li X, Beutler AS, Klee E, Asmann YW, Thompson EA, Kocher JP. SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing. Bioinformatics (Oxford, England). 28: 2180-1. PMID 22689387 DOI: 10.1093/Bioinformatics/Bts337 |
0.03 |
|
| 2011 |
Sicotte H, Rider DN, Poland GA, Dhiman N, Kocher JP. SNPPicker: high quality tag SNP selection across multiple populations. Bmc Bioinformatics. 12: 129. PMID 21535878 DOI: 10.1186/1471-2105-12-129 |
0.029 |
|
| 2014 |
Kalari KR, Nair AA, Bhavsar JD, O'Brien DR, Davila JI, Bockol MA, Nie J, Tang X, Baheti S, Doughty JB, Middha S, Sicotte H, Thompson AE, Asmann YW, Kocher JP. MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. Bmc Bioinformatics. 15: 224. PMID 24972667 DOI: 10.1186/1471-2105-15-224 |
0.029 |
|
| 1989 |
Alfonso JR, Goldman MH, Kocher J. Polyendocrine failure with hypogonadism. New Jersey Medicine : the Journal of the Medical Society of New Jersey. 86: 531-2. PMID 2755612 |
0.028 |
|
| 2014 |
Kocher JP, Quest DJ, Duffy P, Meiners MA, Moore RM, Rider D, Hossain A, Hart SN, Dinu V. The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation. Bioinformatics (Oxford, England). 30: 1920-2. PMID 24618464 DOI: 10.1093/bioinformatics/btu137 |
0.028 |
|
| 2008 |
Roselle H, Ekatan A, Tzeng J, Sapienza M, Kocher J. Symptomatic hepatitis associated with the use of herbal red yeast rice. Annals of Internal Medicine. 149: 516-7. PMID 18838736 |
0.025 |
|
| 2010 |
Chai HS, Therneau TM, Bailey KR, Kocher JP. Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays. Bmc Bioinformatics. 11: 356. PMID 20587065 DOI: 10.1186/1471-2105-11-356 |
0.023 |
|
| 2013 |
Hart SN, Sarangi V, Moore R, Baheti S, Bhavsar JD, Couch FJ, Kocher JP. SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations. Plos One. 8: e83356. PMID 24358278 DOI: 10.1371/journal.pone.0083356 |
0.023 |
|
| 1996 |
Kocher JP, Prévost M, Wodak SJ, Lee B. Properties of the protein matrix revealed by the free energy of cavity formation. Structure (London, England : 1993). 4: 1517-29. PMID 8994976 DOI: 10.1016/S0969-2126(96)00157-8 |
0.023 |
|
| 2011 |
Sohn S, Kocher JP, Chute CG, Savova GK. Drug side effect extraction from clinical narratives of psychiatry and psychology patients. Journal of the American Medical Informatics Association : Jamia. 18: i144-9. PMID 21946242 DOI: 10.1136/Amiajnl-2011-000351 |
0.022 |
|
| 2014 |
Wang C, Evans JM, Bhagwate AV, Prodduturi N, Sarangi V, Middha M, Sicotte H, Vedell PT, Hart SN, Oliver GR, Kocher JP, Maurer MJ, Novak AJ, Slager SL, Cerhan JR, et al. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data. Bioinformatics (Oxford, England). 30: 2678-80. PMID 24876377 DOI: 10.1093/Bioinformatics/Btu363 |
0.022 |
|
| 1992 |
Pattou D, Bach LH, Kocher JP, Maigret B. MOL3D--a modular and interactive program for molecular modeling and conformational analysis: II. Extended modules. Journal of Molecular Graphics. 10: 241-6. PMID 1476998 DOI: 10.1016/0263-7855(92)80076-P |
0.02 |
|
| 2015 |
Ferrence GM, Kocher JL. Crystal structure of 3-methyl-5-tri-methyl-silyl-1H-pyrazole. Acta Crystallographica. Section E, Crystallographic Communications. 71: o397. PMID 26090186 DOI: 10.1107/S2056989015008567 |
0.018 |
|
| 2014 |
Sun Z, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, Kocher JP. CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data. Bmc Genomics. 15: 423. PMID 24894665 DOI: 10.1186/1471-2164-15-423 |
0.018 |
|
| 1979 |
Wayoff M, Kocher JP, Chobaut C, Simon C. [Long-term results of transtympanic drainage]. Journal Francais D'Oto-Rhino-Laryngologie; Audiophonologie, Chirurgie Maxillo-Faciale. 28: 279-89. PMID 156771 |
0.016 |
|
| 2010 |
Sohn S, Murphy SP, Masanz JJ, Kocher JP, Savova GK. Classification of medication status change in clinical narratives. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 762-6. PMID 21347081 |
0.012 |
|
| 2016 |
Ravikumar KE, Wagholikar KB, Li D, Kocher JP, Liu H. Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. Bmc Bioinformatics. 17: 162. PMID 27075759 DOI: 10.1186/S12859-016-0974-0 |
0.01 |
|
| 2014 |
Jeraldo P, Kalari K, Chen X, Bhavsar J, Mangalam A, White B, Nelson H, Kocher JP, Chia N. IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries. Plos One. 9: e114804. PMID 25506826 DOI: 10.1371/journal.pone.0114804 |
0.01 |
|
| 2009 |
Kocher JL, Edler KL, Bohling BA, Nora GP, Stafford C, Hitchcock SR, Ferrence GM. (5S,6R)-5-Methyl-6-phenyl-4-propyl-1,3,4-oxadiazinane-2-thione. Acta Crystallographica. Section E, Structure Reports Online. 65: o1421-2. PMID 21583263 DOI: 10.1107/S1600536809019382 |
0.01 |
|
| 2009 |
Morilla ME, Kocher J, Harmaty M. Localized amyloidosis at the site of enfuvirtide injection. Annals of Internal Medicine. 151: 515-6. PMID 19805777 |
0.01 |
|
| 1991 |
De Coen JL, Kocher JP, Delcroix C, Lontie JF, Malmendier CL. Conformational properties of apolipoproteins studied by computer graphics. Advances in Experimental Medicine and Biology. 285: 141-5. PMID 1907079 |
0.01 |
|
| 1966 |
Kocher J. [Longevity and life expectancy]. Praxis. 55: 1392-5. PMID 6013640 |
0.01 |
|
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