Jack Gilbert - Publications

Affiliations: 
Department of Surgery University of Chicago, Chicago, IL 

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhu T, Liu X, Kong FQ, Duan YY, Yee AL, Kim M, Galzote C, Gilbert JA, Quan ZX. Age and Mothers: Potent Influences of Children's Skin Microbiota. The Journal of Investigative Dermatology. PMID 31420081 DOI: 10.1016/j.jid.2019.05.018  0.32
2019 Hyoju SK, Zaborin A, Keskey R, Sharma A, Arnold W, van den Berg F, Kim SM, Gottel N, Bethel C, Charnot-Katsikas A, Jianxin P, Adriaansens C, Papazian E, Gilbert JA, Zaborina O, et al. Mice Fed an Obesogenic Western Diet, Administered Antibiotics, and Subjected to a Sterile Surgical Procedure Develop Lethal Septicemia with Multidrug-Resistant Pathobionts. Mbio. 10. PMID 31363025 DOI: 10.1128/mBio.00903-19  1
2019 Sharma A, Laxman B, Naureckas ET, Hogarth DK, Sperling AI, Solway J, Ober C, Gilbert JA, White SR. Associations between fungal and bacterial microbiota of airways and asthma endotypes. The Journal of Allergy and Clinical Immunology. PMID 31279011 DOI: 10.1016/j.jaci.2019.06.025  1
2019 Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. Draft Genome Sequence of sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. Microbiology Resource Announcements. 8. PMID 31221646 DOI: 10.1128/MRA.00403-19  1
2019 Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R. Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques. PMID 31124709 DOI: 10.2144/btn-2018-0192  1
2019 Sharma A, Richardson M, Cralle L, Stamper CE, Maestre JP, Stearns-Yoder KA, Postolache TT, Bates KL, Kinney KA, Brenner LA, Lowry CA, Gilbert JA, Hoisington AJ. Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. Microbiome. 7: 70. PMID 31046835 DOI: 10.1186/s40168-019-0686-6  1
2019 Urbaniak C, van Dam P, Zaborin A, Zaborina O, Gilbert JA, Torok T, Wang CCC, Venkateswaran K. Genomic Characterization and Virulence Potential of Two Isolates Cultured from the International Space Station. Msystems. 4. PMID 30944876 DOI: 10.1128/mSystems.00345-18  0.32
2019 Sharma A, Buschmann MM, Gilbert JA. Pharmacomicrobiomics: The holy grail to variability in drug response? Clinical Pharmacology and Therapeutics. PMID 30937887 DOI: 10.1002/cpt.1437  1
2019 Timmis K, Cavicchioli R, Garcia JL, Nogales B, Chavarría M, Stein L, McGenity TJ, Webster N, Singh B, Handelsman J, de Lorenzo V, Pruzzo C, Timmis J, Martín JLR, Verstraete W, ... ... Gilbert J, et al. The urgent need for microbiology literacy in society. Environmental Microbiology. PMID 30912268 DOI: 10.1111/1462-2920.14611  1
2019 Yee AL, Miller E, Dishaw LJ, Gordon JM, Ji M, Dutra S, Ho TTB, Gilbert JA, Groer M. Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants. Msystems. 4. PMID 30834328 DOI: 10.1128/mSystems.00229-18  0.32
2018 Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. Enteric dysbiosis and fecal calprotectin expression in premature infants. Pediatric Research. PMID 30631136 DOI: 10.1038/s41390-018-0254-y  0.32
2018 Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R. Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes. Frontiers in Microbiology. 9: 3095. PMID 30619174 DOI: 10.3389/fmicb.2018.03095  1
2018 Strandwitz P, Kim KH, Terekhova D, Liu JK, Sharma A, Levering J, McDonald D, Dietrich D, Ramadhar TR, Lekbua A, Mroue N, Liston C, Stewart EJ, Dubin MJ, Zengler K, ... ... Gilbert JA, et al. GABA-modulating bacteria of the human gut microbiota. Nature Microbiology. PMID 30531975 DOI: 10.1038/s41564-018-0307-3  1
2018 Navarro G, Sharma A, Dugas LR, Forrester T, Gilbert JA, Layden BT. Gut microbial features can predict host phenotype response to protein deficiency. Physiological Reports. 6: e13932. PMID 30516001 DOI: 10.14814/phy2.13932  1
2018 Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, et al. The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. Microbiome. 6: 187. PMID 30340631 DOI: 10.1186/s40168-018-0561-x  0.56
2018 Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. Dichotomous development of the gut microbiome in preterm infants. Microbiome. 6: 157. PMID 30208950 DOI: 10.1186/s40168-018-0547-8  0.32
2018 Sharma A, Gilbert JA. Microbial exposure and human health. Current Opinion in Microbiology. 44: 79-87. PMID 30195150 DOI: 10.1016/j.mib.2018.08.003  1
2018 Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D. Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy. Scientific Reports. 8: 12500. PMID 30131575 DOI: 10.1038/s41598-018-30428-3  0.32
2018 Salas Garcia MC, Yee AL, Gilbert JA, Dsouza M. Dysbiosis in Children Born by Caesarean Section. Annals of Nutrition & Metabolism. 73: 24-32. PMID 30041170 DOI: 10.1159/000492168  0.32
2018 Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF. Metagenomic analysis of basal ice from an Alaskan glacier. Microbiome. 6: 123. PMID 29976249 DOI: 10.1186/s40168-018-0505-5  0.64
2018 McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, ... Gilbert JA, et al. American Gut: an Open Platform for Citizen Science Microbiome Research. Msystems. 3. PMID 29795809 DOI: 10.1128/mSystems.00031-18  0.64
2018 Peñalver Bernabé B, Cralle L, Gilbert JA. Systems biology of the human microbiome. Current Opinion in Biotechnology. 51: 146-153. PMID 29453029 DOI: 10.1016/j.copbio.2018.01.018  0.56
2017 Griffin JS, Lu N, Sangwan N, Li A, Dsouza M, Stumpf AJ, Sevilla T, Culotti A, Keefer LL, Kelly JJ, Gilbert JA, Wells GF, Packman AI. Microbial diversity in an intensively managed landscape is structured by landscape connectivity. Fems Microbiology Ecology. PMID 28961974 DOI: 10.1093/femsec/fix120  0.64
2017 Berni Canani R, De Filippis F, Nocerino R, Laiola M, Paparo L, Calignano A, De Caro C, Coretti L, Chiariotti L, Gilbert JA, Ercolini D. Specific signatures of the gut microbiota and increased levels of butyrate in children treated with fermented cow's milk containing heat-killed Lactobacillus paracasei CBA L74. Applied and Environmental Microbiology. PMID 28733284 DOI: 10.1128/AEM.01206-17  0.32
2017 Kumar R, Verma H, Haider S, Bajaj A, Sood U, Ponnusamy K, Nagar S, Shakarad MN, Negi RK, Singh Y, Khurana JP, Gilbert JA, Lal R. Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. Msystems. 2. PMID 28567447 DOI: 10.1128/mSystems.00020-17  1
2017 Lax S, Sangwan N, Smith D, Larsen P, Handley KM, Richardson M, Guyton K, Krezalek M, Shogan BD, Defazio J, Flemming I, Shakhsheer B, Weber S, Landon E, Garcia-Houchins S, ... ... Gilbert JA, et al. Bacterial colonization and succession in a newly opened hospital. Science Translational Medicine. 9. PMID 28539477 DOI: 10.1126/scitranslmed.aah6500  0.64
2017 Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". Msystems. 2. PMID 28428981 DOI: 10.1128/mSystems.00023-17  0.64
2017 Gaines S, Luo JN, Gilbert J, Zaborina O, Alverdy JC. Optimum Operating Room Environment for the Prevention of Surgical Site Infections. Surgical Infections. PMID 28402706 DOI: 10.1089/sur.2017.020  0.32
2017 Gibbons SM, Lekberg Y, Mummey DL, Sangwan N, Ramsey PW, Gilbert JA. Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. Msystems. 2. PMID 28289729 DOI: 10.1128/mSystems.00178-16  0.64
2016 Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort. Msystems. 1. PMID 27822557 DOI: 10.1128/mSystems.00105-16  0.64
2016 Sangwan N, Zarraonaindia I, Hampton-Marcell JT, Ssegane H, Eshoo TW, Rijal G, Negri MC, Gilbert JA. Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations. Msystems. 1. PMID 27822527 DOI: 10.1128/mSystems.00003-16  0.64
2016 Stein MM, Hrusch CL, Gozdz J, Igartua C, Pivniouk V, Murray SE, Ledford JG, Marques Dos Santos M, Anderson RL, Metwali N, Neilson JW, Maier RM, Gilbert JA, Holbreich M, Thorne PS, et al. Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children. The New England Journal of Medicine. 375: 411-21. PMID 27518660 DOI: 10.1056/NEJMoa1508749  0.32
2016 Yee AL, Gilbert JA. MICROBIOME. Is triclosan harming your microbiome? Science (New York, N.Y.). 353: 348-9. PMID 27463658 DOI: 10.1126/science.aag2698  0.32
2016 Wang H, Sangwan N, Li HY, Su JQ, Oyang WY, Zhang ZJ, Gilbert JA, Zhu YG, Ping F, Zhang HL. The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. The Isme Journal. PMID 27458785 DOI: 10.1038/ismej.2016.103  0.64
2016 Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 535: 94-103. PMID 27383984 DOI: 10.1038/nature18850  1
2016 Gupta V, Haider S, Sood U, Gilbert JA, Ramjee M, Forbes K, Singh Y, Lopes BS, Lal R. Comparative genomic analysis of novel Acinetobacter symbionts: A combined systems biology and genomics approach. Scientific Reports. 6: 29043. PMID 27378055 DOI: 10.1038/srep29043  1
2016 Thomas T, Moitinho-Silva L, Lurgi M, Björk JR, Easson C, Astudillo-García C, Olson JB, Erwin PM, López-Legentil S, Luter H, Chaves-Fonnegra A, Costa R, Schupp PJ, Steindler L, Erpenbeck D, ... Gilbert J, et al. Diversity, structure and convergent evolution of the global sponge microbiome. Nature Communications. 7: 11870. PMID 27306690 DOI: 10.1038/ncomms11870  1
2016 Sharma A, Gilbert JA, Lal R. (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. Scientific Reports. 6: 25527. PMID 27151933 DOI: 10.1038/srep25527  1
2016 Cardona C, Weisenhorn P, Henry C, Gilbert JA. Network-based metabolic analysis and microbial community modeling. Current Opinion in Microbiology. 31: 124-131. PMID 27060776 DOI: 10.1016/j.mib.2016.03.008  1
2016 Sangwan N, Xia F, Gilbert JA. Recovering complete and draft population genomes from metagenome datasets. Microbiome. 4: 8. PMID 26951112 DOI: 10.1186/s40168-016-0154-5  0.64
2016 O'Brien SL, Gibbons SM, Owens SM, Hampton-Marcell J, Johnston ER, Jastrow JD, Gilbert JA, Meyer F, Antonopoulos DA. Spatial scale drives patterns in soil bacterial diversity. Environmental Microbiology. PMID 26914164 DOI: 10.1111/1462-2920.13231  1
2016 De Filippis F, Genovese A, Ferranti P, Gilbert JA, Ercolini D. Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate. Scientific Reports. 6: 21871. PMID 26911915 DOI: 10.1038/srep21871  1
2016 Dugas LR, Fuller M, Gilbert J, Layden BT. The obese gut microbiome across the epidemiologic transition. Emerging Themes in Epidemiology. 13: 2. PMID 26759600 DOI: 10.1186/s12982-015-0044-5  1
2016 Burstein D, Amaro F, Zusman T, Lifshitz Z, Cohen O, Gilbert JA, Pupko T, Shuman HA, Segal G. Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires. Nature Genetics. 48: 167-75. PMID 26752266 DOI: 10.1038/ng.3481  1
2015 Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, ... ... Gilbert JA, et al. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science (New York, N.Y.). PMID 26657285 DOI: 10.1126/science.aad2646  1
2015 Denner DR, Sangwan N, Becker JB, Hogarth DK, Oldham J, Castillo J, Sperling AI, Solway J, Naureckas ET, Gilbert JA, White SR. Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which is distinct from that of bronchoalveolar lavage in asthmatic airways. The Journal of Allergy and Clinical Immunology. PMID 26627545 DOI: 10.1016/j.jaci.2015.10.017  0.32
2015 Yang T, Weisenhorn P, Gilbert JA, Ni Y, Sun R, Shi Y, Chu H. Carbon constrains fungal endophyte assemblages along the timberline. Environmental Microbiology. PMID 26627043 DOI: 10.1111/1462-2920.13153  1
2015 Gibbons SM, Gilbert JA. Microbial diversity-exploration of natural ecosystems and microbiomes. Current Opinion in Genetics & Development. 35: 66-72. PMID 26598941 DOI: 10.1016/j.gde.2015.10.003  1
2015 Ying S, Zeng DN, Chi L, Tan Y, Galzote C, Cardona C, Lax S, Gilbert J, Quan ZX. The Influence of Age and Gender on Skin-Associated Microbial Communities in Urban and Rural Human Populations. Plos One. 10: e0141842. PMID 26510185 DOI: 10.1371/journal.pone.0141842  1
2015 Fuller M, Priyadarshini M, Gibbons SM, Angueira AR, Brodsky M, Hayes MG, Kovatcheva-Datchary P, Backhed F, Gilbert JA, Lowe WL, Layden BT. The Short Chain Fatty Acid Receptor, FFA2, contributes to gestational glucose homeostasis. American Journal of Physiology. Endocrinology and Metabolism. ajpendo.00171.2015. PMID 26394664 DOI: 10.1152/ajpendo.00171.2015  1
2015 Berni Canani R, Sangwan N, Stefka AT, Nocerino R, Paparo L, Aitoro R, Calignano A, Khan AA, Gilbert JA, Nagler CR. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants. The Isme Journal. PMID 26394008 DOI: 10.1038/ismej.2015.151  0.32
2015 Lüchmann KH, Clark MS, Bainy AC, Gilbert JA, Craft JA, Chipman JK, Thorne MA, Mattos JJ, Siebert MN, Schroeder DC. Key metabolic pathways involved in xenobiotic biotransformation and stress responses revealed by transcriptomics of the mangrove oyster Crassostrea brasiliana. Aquatic Toxicology (Amsterdam, Netherlands). 166: 10-20. PMID 26186662 DOI: 10.1016/j.aquatox.2015.06.012  1
2015 Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Gilbert JA, Hentschel U, Steindler L. Lifestyle evolution in cyanobacterial symbionts of sponges. Mbio. 6: e00391-15. PMID 26037118 DOI: 10.1128/mBio.00391-15  1
2015 Van Bonn W, LaPointe A, Gibbons SM, Frazier A, Hampton-Marcell J, Gilbert J. Aquarium microbiome response to ninety-percent system water change: Clues to microbiome management. Zoo Biology. 34: 360-7. PMID 26031788 DOI: 10.1002/zoo.21220  1
2015 Sangwan N, Lambert C, Sharma A, Gupta V, Khurana P, Khurana JP, Sockett RE, Gilbert JA, Lal R. Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypes. Environmental Microbiology Reports. PMID 25953741 DOI: 10.1111/1758-2229.12297  1
2015 Shogan BD, Belogortseva N, Luong PM, Zaborin A, Lax S, Bethel C, Ward M, Muldoon JP, Singer M, An G, Umanskiy K, Konda V, Shakhsheer B, Luo J, Klabbers R, ... ... Gilbert J, et al. Collagen degradation and MMP9 activation by Enterococcus faecalis contribute to intestinal anastomotic leak. Science Translational Medicine. 7: 286ra68. PMID 25947163 DOI: 10.1126/scitranslmed.3010658  1
2015 Leone V, Gibbons SM, Martinez K, Hutchison AL, Huang EY, Cham CM, Pierre JF, Heneghan AF, Nadimpalli A, Hubert N, Zale E, Wang Y, Huang Y, Theriault B, Dinner AR, ... ... Gilbert JA, et al. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host & Microbe. 17: 681-9. PMID 25891358 DOI: 10.1016/j.chom.2015.03.006  1
2015 Berni Canani R, Gilbert JA, Nagler CR. The role of the commensal microbiota in the regulation of tolerance to dietary allergens. Current Opinion in Allergy and Clinical Immunology. 15: 243-9. PMID 25827065 DOI: 10.1097/ACI.0000000000000157  0.32
2015 Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. The soil microbiome influences grapevine-associated microbiota. Mbio. 6. PMID 25805735 DOI: 10.1128/mBio.02527-14  1
2015 Lax S, Nagler CR, Gilbert JA. Our interface with the built environment: immunity and the indoor microbiota. Trends in Immunology. 36: 121-3. PMID 25754179 DOI: 10.1016/j.it.2015.01.001  0.32
2015 Huang EY, Inoue T, Leone VA, Dalal S, Touw K, Wang Y, Musch MW, Theriault B, Higuchi K, Donovan S, Gilbert J, Chang EB. Using corticosteroids to reshape the gut microbiome: implications for inflammatory bowel diseases. Inflammatory Bowel Diseases. 21: 963-72. PMID 25738379 DOI: 10.1097/MIB.0000000000000332  1
2015 Ramos T, Dedesko S, Siegel JA, Gilbert JA, Stephens B. Spatial and temporal variations in indoor environmental conditions, human occupancy, and operational characteristics in a new hospital building. Plos One. 10: e0118207. PMID 25729898 DOI: 10.1371/journal.pone.0118207  1
2015 Gilbert JA, Henry C. Predicting ecosystem emergent properties at multiple scales Environmental Microbiology Reports. 7: 20-22. PMID 25721595 DOI: 10.1111/1758-2229.12258  1
2015 Amaro F, Wang W, Gilbert JA, Anderson OR, Shuman HA. Diverse protist grazers select for virulence-related traits in Legionella. The Isme Journal. 9: 1607-18. PMID 25575308 DOI: 10.1038/ismej.2014.248  1
2014 Gilbert JA, Neufeld JD. Life in a World without Microbes. Plos Biology. 12: e1002020. PMID 25513890 DOI: 10.1371/journal.pbio.1002020  1
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