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Takao Kasuga - Publications

Affiliations: 
Plant and Microbial Biology University of California, Berkeley, Berkeley, CA, United States 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cochetel N, Minio A, Guarracino A, Garcia JF, Figueroa-Balderas R, Massonnet M, Kasuga T, Londo JP, Garrison E, Gaut BS, Cantu D. A super-pangenome of the North American wild grape species. Genome Biology. 24: 290. PMID 38111050 DOI: 10.1186/s13059-023-03133-2  0.315
2023 Wang Z, Wang YW, Kasuga T, Lopez-Giraldez F, Zhang Y, Zhang Z, Wang Y, Dong C, Sil A, Trail F, Yarden O, Townsend JP. Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora. Plos Genetics. 19: e1011019. PMID 37934795 DOI: 10.1371/journal.pgen.1011019  0.547
2023 Wang Z, Wang YW, Kasuga T, Hassler H, Lopez-Giraldez F, Dong C, Yarden O, Townsend JP. Origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa. Molecular Ecology. PMID 37843462 DOI: 10.1111/mec.17168  0.626
2022 Kronmiller BA, Feau N, Shen D, Tabima JF, Ali SS, Armitage AD, Arredondo FD, Bailey BA, Bollmann SR, Dale A, Harrison R, Hrywkiw K, Kasuga T, McDougal R, Nellist CF, et al. Comparative genomic analysis of 31 genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant-Microbe Interactions : Mpmi. PMID 36306437 DOI: 10.1094/MPMI-06-22-0133-R  0.383
2020 Morales-Cruz A, Ali SS, Minio A, Figueroa-Balderas R, García JF, Kasuga T, Puig AS, Marelli JP, Bailey BA, Cantu D. Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen and Its Close Relative . G3 (Bethesda, Md.). PMID 32354704 DOI: 10.1534/G3.120.401014  0.418
2019 Malar C M, Yuzon JD, Panda A, Kasuga T, Tripathy S. Updated assembly resource of Phytophthora ramorum Pr102 isolate incorporating long reads from PacBio sequencing. Molecular Plant-Microbe Interactions : Mpmi. PMID 31306082 DOI: 10.1094/MPMI-05-19-0147-A  0.31
2019 Sillo F, Gonthier P, Lockman B, Kasuga T, Garbelotto M. Molecular analyses identify hybridization-mediated nuclear evolution in newly discovered fungal hybrids. Ecology and Evolution. 9: 6588-6605. PMID 31236246 DOI: 10.1002/Ece3.5238  0.391
2018 Elliott M, Yuzon J, C MM, Tripathy S, Bui M, Chastagner GA, Coats K, Rizzo DM, Garbelotto M, Kasuga T. Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts. Bmc Genomics. 19: 320. PMID 29720102 DOI: 10.1186/S12864-018-4709-7  0.347
2017 Lin H, Hildebrand A, Kasuga T, Fan Z. Engineering Neurospora crassa for cellobionate production directly from cellulose without any enzyme addition. Enzyme and Microbial Technology. 99: 25-31. PMID 28193328 DOI: 10.1016/J.Enzmictec.2016.12.009  0.305
2016 Kasuga T, Bui M, Bernhardt E, Swiecki T, Aram K, Cano LM, Webber J, Brasier C, Press C, Grünwald NJ, Rizzo DM, Garbelotto M. Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum. Bmc Genomics. 17: 385. PMID 27206972 DOI: 10.1186/S12864-016-2717-Z  0.312
2015 Yin J, Chang X, Kasuga T, Bui M, Reid MS, Jiang CZ. A basic helix-loop-helix transcription factor, PhFBH4, regulates flower senescence by modulating ethylene biosynthesis pathway in petunia. Horticulture Research. 2: 15059. PMID 26715989 DOI: 10.1038/Hortres.2015.59  0.336
2014 Szewczyk E, Kasuga T, Fan Z. A new variant of self-excising β-recombinase/six cassette for repetitive gene deletion and homokaryon purification in Neurospora crassa. Journal of Microbiological Methods. 100: 17-23. PMID 24556286 DOI: 10.1016/J.Mimet.2014.02.007  0.335
2013 Kasuga T, Gijzen M. Epigenetics and the evolution of virulence. Trends in Microbiology. 21: 575-82. PMID 24095304 DOI: 10.1016/J.Tim.2013.09.003  0.364
2013 Samils N, Gioti A, Karlsson M, Sun Y, Kasuga T, Bastiaans E, Wang Z, Li N, Townsend JP, Johannesson H. Sex-linked transcriptional divergence in the hermaphrodite fungus Neurospora tetrasperma. Proceedings. Biological Sciences / the Royal Society. 280: 20130862. PMID 23782882 DOI: 10.1098/Rspb.2013.0862  0.707
2013 Theodoro RC, Scheel CM, Brandt ME, Kasuga T, Bagagli E. PRP8 intein in cryptic species of Histoplasma capsulatum: evolution and phylogeny. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 18: 174-82. PMID 23665464 DOI: 10.1016/J.Meegid.2013.05.001  0.461
2013 Wu W, Hildebrand A, Kasuga T, Xiong X, Fan Z. Direct cellobiose production from cellulose using sextuple beta-glucosidase gene deletion Neurospora crassa mutants. Enzyme and Microbial Technology. 52: 184-9. PMID 23410930 DOI: 10.1016/J.Enzmictec.2012.12.010  0.331
2013 Szewczyk E, Kasuga T, Fan Z. Efficient sequential repetitive gene deletions in Neurospora crassa employing a self-excising β-recombinase/six cassette. Journal of Microbiological Methods. 92: 236-43. PMID 23246910 DOI: 10.1016/J.Mimet.2012.12.004  0.364
2012 Kasuga T, Kozanitas M, Bui M, Hüberli D, Rizzo DM, Garbelotto M. Phenotypic diversification is associated with host-induced transposon derepression in the sudden oak death pathogen Phytophthora ramorum. Plos One. 7: e34728. PMID 22529930 DOI: 10.1371/Journal.Pone.0034728  0.428
2011 Gilbert LB, Kasuga T, Glass NL, Taylor JW. Array CGH phylogeny: how accurate are comparative genomic hybridization-based trees? Bmc Genomics. 12: 487. PMID 21978207 DOI: 10.1186/1471-2164-12-487  0.762
2011 Gilbert LB, Chae L, Kasuga T, Taylor JW. Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach. Bmc Genomics. 12: 456. PMID 21936922 DOI: 10.1186/1471-2164-12-456  0.761
2010 Greenwald CJ, Kasuga T, Glass NL, Shaw BD, Ebbole DJ, Wilkinson HH. Temporal and spatial regulation of gene expression during asexual development of Neurospora crassa. Genetics. 186: 1217-30. PMID 20876563 DOI: 10.1534/Genetics.110.121780  0.428
2009 Videira A, Kasuga T, Tian C, Lemos C, Castro A, Glass NL. Transcriptional analysis of the response of Neurospora crassa to phytosphingosine reveals links to mitochondrial function. Microbiology (Reading, England). 155: 3134-41. PMID 19520721 DOI: 10.1099/Mic.0.029710-0  0.347
2009 Kasuga T, Mannhaupt G, Glass NL. Relationship between phylogenetic distribution and genomic features in Neurospora crassa. Plos One. 4: e5286. PMID 19461939 DOI: 10.1371/Journal.Pone.0005286  0.417
2008 Kasuga T, Glass NL. Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches. Eukaryotic Cell. 7: 1549-64. PMID 18676954 DOI: 10.1128/Ec.00195-08  0.437
2007 Tian C, Kasuga T, Sachs MS, Glass NL. Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons. Eukaryotic Cell. 6: 1018-29. PMID 17449655 DOI: 10.1128/Ec.00078-07  0.426
2007 Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs MS, Glass NL, McCluskey K, Plamann M, Galagan JE, Birren BW, Weiss RL, Townsend JP, Loros JJ, Nelson MA, Lambreghts R, ... ... Kasuga T, et al. Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Advances in Genetics. 57: 49-96. PMID 17352902 DOI: 10.1016/S0065-2660(06)57002-6  0.596
2006 Johannesson H, Kasuga T, Schaller RA, Good B, Gardner MJ, Townsend JP, Cole GT, Taylor JW. Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology : Fg & B. 43: 545-59. PMID 16697669 DOI: 10.1016/J.Fgb.2006.02.003  0.742
2005 Kasuga T, Townsend JP, Tian C, Gilbert LB, Mannhaupt G, Taylor JW, Glass NL. Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic Acids Research. 33: 6469-85. PMID 16287898 DOI: 10.1093/Nar/Gki953  0.73
2003 Kasuga T, White TJ, Koenig G, McEwen J, Restrepo A, Castañeda E, Da Silva Lacaz C, Heins-Vaccari EM, De Freitas RS, Zancopé-Oliveira RM, Qin Z, Negroni R, Carter DA, Mikami Y, Tamura M, et al. Phylogeography of the fungal pathogen Histoplasma capsulatum. Molecular Ecology. 12: 3383-401. PMID 14629354 DOI: 10.1046/J.1365-294X.2003.01995.X  0.689
2002 Kasuga T, White TJ, Taylor JW. Estimation of nucleotide substitution rates in Eurotiomycete fungi. Molecular Biology and Evolution. 19: 2318-24. PMID 12446823 DOI: 10.1093/Oxfordjournals.Molbev.A004056  0.555
2002 Tamura M, Kasuga T, Watanabe K, Katsu M, Mikami Y, Nishimura K. Phylogenetic characterization of Histoplasma capsulatum strains based on ITS region sequences, including two new strains from Thai and Chinese patients in Japan. Nihon Ishinkin Gakkai Zasshi = Japanese Journal of Medical Mycology. 43: 11-9. PMID 11865296 DOI: 10.3314/Jjmm.43.11  0.36
2000 McEwen JG, Taylor JW, Carter D, Xu J, Felipe MS, Vilgalys R, Mitchell TG, Kasuga T, White T, Bui T, Soares CM. Molecular typing of pathogenic fungi. Medical Mycology. 38: 189-97. PMID 11204145 DOI: 10.1080/Mmy.38.S1.189.197  0.487
2000 Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology : Fg & B. 31: 21-32. PMID 11118132 DOI: 10.1006/Fgbi.2000.1228  0.728
2000 Kasuga T, Mitchelson KR. Intersterility group differentiation in Heterobasidion annosum using ribosomal IGS1 region polymorphism Forest Pathology. 30: 329-344. DOI: 10.1046/J.1439-0329.2000.00216.X  0.38
1999 Kasuga T, Taylor JW, White TJ. Phylogenetic Relationships of Varieties and Geographical Groups of the Human Pathogenic Fungus Histoplasma capsulatum Darling Journal of Clinical Microbiology. 37: 653-663. PMID 9986828 DOI: 10.1128/Jcm.37.3.653-663.1999  0.566
1995 Kasuga T, Cheng J, Mitchelson KR. Metastable single-strand DNA conformational polymorphism analysis results in enhanced polymorphism detection. Genome Research. 4: 227-233. PMID 8574191 DOI: 10.1101/Gr.4.4.227  0.314
1995 Moricca S, Kasuga T, Mitchelson K, Ragazzi A. Fusarium oxysporum f. sp. vasinfectum 5.8s rRNA gene and adjacent ITS1 and ITS2 regions Fungal Genetics Reports. 42: 53-55. DOI: 10.4148/1941-4765.1345  0.318
1993 Kasuga T, Mitchelson K. Determination of the DNA sequence of the 5.8S ribosomal gene of Heterobasidion annosum and Heterobasidion araucariae. Nucleic Acids Research. 21: 1320-1320. PMID 8464717 DOI: 10.1093/Nar/21.5.1320  0.376
1993 Kasuga T, Woods C, Woodward S, Mitchelson K. Heterobasidion annosum 5.8s ribosomal DNA and internal transcribed spacer sequence: rapid identification of European intersterility groups by ribosomal DNA restriction polymorphism. Current Genetics. 24: 433-6. PMID 7905365 DOI: 10.1007/Bf00351853  0.369
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