Robert A. Sanford, Ph.D. - Publications

Geology University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Alcalde RE, Dundas CM, Dong Y, Sanford RA, Keitz BK, Fouke BW, Werth CJ. The role of chemotaxis and efflux pumps on nitrate reduction in the toxic regions of a ciprofloxacin concentration gradient. The Isme Journal. PMID 33927341 DOI: 10.1038/s41396-021-00975-1  1
2021 He Y, Huang D, Li S, Shi L, Sun W, Sanford RA, Fan H, Wang M, Li B, Li Y, Tang X, Dong Y. Profiling of Microbial Communities in the Sediments of Jinsha River Watershed Exposed to Different Levels of Impacts by the Vanadium Industry, Panzhihua, China. Microbial Ecology. PMID 33580272 DOI: 10.1007/s00248-021-01708-9  0.56
2020 Dong Y, Sanford RA, Boyanov MI, Flynn T, O'Loughlin EJ, Kemner KM, George S, Fouke K, Li S, Huang D, Li S, Fouke BW. Controls on Iron Reduction and Biomineralization over Broad Environmental Conditions as Suggested by the Firmicutes Strain Z6. Environmental Science & Technology. PMID 32693580 DOI: 10.1021/Acs.Est.0C03853  0.56
2020 Basu A, Wanner C, Johnson TM, Lundstrom C, Sanford RA, Sonnenthal E, Boyanov MI, Kemner KM. Microbial U isotope fractionation depends on U(VI) reduction rate. Environmental Science & Technology. PMID 31909614 DOI: 10.1021/Acs.Est.9B05935  0.56
2019 Deng J, Zhou L, Sanford RA, Shechtman LA, Dong Y, Alcalde RE, Sivaguru M, Fried GA, Werth CJ, Fouke BW. Adaptive Evolution of Escherichia coli to Ciprofloxacin in Controlled Stress Environments: Contrasting Patterns of Resistance in Spatially Varying versus Uniformly Mixed Concentration Conditions. Environmental Science & Technology. PMID 31269400 DOI: 10.1021/Acs.Est.9B00881  1
2019 Dong Y, Sanford RA, Inskeep WP, Srivastava V, Bulone V, Fields CJ, Yau PM, Sivaguru M, Ahrén D, Fouke KW, Weber J, Werth CR, Cann IK, Keating KM, Khetani RS, et al. Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology. PMID 31038352 DOI: 10.1089/Ast.2018.1965  0.56
2019 Berns EC, Sanford RA, Valocchi AJ, Strathmann TJ, Schaefer CE, Werth CJ. Contributions of biotic and abiotic pathways to anaerobic trichloroethene transformation in low permeability source zones. Journal of Contaminant Hydrology. PMID 31006532 DOI: 10.1016/J.Jconhyd.2019.04.003  1
2019 Michelson K, Alcalde RE, Sanford RA, Valocchi AJ, Werth CJ. Diffusion-based recycling of flavins allows Shewanella oneidensis MR-1 to yield energy from metal reduction across physical separations. Environmental Science & Technology. PMID 30840821 DOI: 10.1021/Acs.Est.8B04718  1
2019 Alcalde RE, Michelson K, Zhou L, Schmitz E, Deng J, Sanford RA, Fouke BW, Werth CJ. Motility of Shewanella oneidensis MR-1 Allows for Nitrate Reduction in the Toxic Region of a Ciprofloxacin Concentration Gradient in a Microfluidic Reactor. Environmental Science & Technology. PMID 30673286 DOI: 10.1021/Acs.Est.8B04838  1
2018 Sivaguru M, Saw JJ, Williams JC, Lieske JC, Krambeck AE, Romero MF, Chia N, Schwaderer AL, Alcalde RE, Bruce WJ, Wildman DE, Fried GA, Werth CJ, Reeder RJ, Yau PM, ... Sanford RA, et al. Geobiology reveals how human kidney stones dissolve in vivo. Scientific Reports. 8: 13731. PMID 30213974 DOI: 10.1038/S41598-018-31890-9  1
2017 Michelson K, Sanford RA, Valocchi AJ, Werth CJ. Nanowires of Geobacter sulfurreducens require redox cofactors to reduce metals in pore spaces too small for cell passage. Environmental Science & Technology. PMID 28929755 DOI: 10.1021/Acs.Est.7B02531  1
2017 Singh R, Sivaguru M, Fried GA, Fouke BW, Sanford RA, Carrera M, Werth CJ. Real rock-microfluidic flow cell: A test bed for real-time in situ analysis of flow, transport, and reaction in a subsurface reactive transport environment. Journal of Contaminant Hydrology. PMID 28802767 DOI: 10.1016/J.Jconhyd.2017.08.001  1
2016 Dong Y, Sanford RA, Chang YJ, Mcinerney MJ, Fouke BW. Hematite Reduction Buffers Acid Generation and Enhances Nutrient Uptake by a Fermentative Iron Reducing Bacterium, Orenia metallireducens Strain Z6. Environmental Science & Technology. PMID 27943672 DOI: 10.1021/Acs.Est.6B04126  0.56
2016 Dong Y, Sanford RA, Boyanov MI, Kemner KM, Flynn TM, O'Loughlin EJ, Chang YJ, Locke RA, Weber JR, Egan SM, Mackie RI, Cann I, Fouke BW. Orenia metallireducens sp. nov. strain Z6, a Novel Metal-reducing Firmicute from the Deep Subsurface. Applied and Environmental Microbiology. PMID 27565620 DOI: 10.1128/Aem.02382-16  1
2016 Dong Y, Sanford RA, Boyanov MI, Kemner KM, Flynn TM, O'Loughlin EJ, Locke Ii RA, Weber JR, Egan SM, Fouke BW. Tepidibacillus decaturensis sp. nov.: a microaerophilic, moderately thermophilic iron-reducing bacterium isolated from a depth of 1.7 km in the Illinois Basin, USA. International Journal of Systematic and Evolutionary Microbiology. PMID 27406851 DOI: 10.1099/Ijsem.0.001295  1
2016 Yoon S, Nissen S, Park D, Sanford RA, Löffler FE. Nitrous oxide reduction kinetics distinguish bacteria harboring clade I versus clade II NosZ. Applied and Environmental Microbiology. PMID 27084012 DOI: 10.1128/Aem.00409-16  1
2016 Dong Y, Chang YJ, Sanford RA, Fouke BW. Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA. Genome Announcements. 4. PMID 27056217 DOI: 10.1128/Genomea.00190-16  0.56
2016 Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Löffler FE. Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils. Applied and Environmental Microbiology. PMID 26969694 DOI: 10.1128/Aem.00243-16  1
2015 Singh R, Yoon H, Sanford RA, Katz LE, Fouke BW, Werth CJ. Metabolism Induced CaCO3 Biomineralization During Reactive Transport in a Micromodel: Implications for Porosity Alteration. Environmental Science & Technology. PMID 26348257 DOI: 10.1021/Acs.Est.5B00152  1
2015 Yoon S, Sanford RA, Löffler FE. Nitrite Control over Dissimilatory Nitrate/Nitrite Reduction Pathways in Shewanella loihica Strain PV-4. Applied and Environmental Microbiology. 81: 3510-7. PMID 25769828 DOI: 10.1128/Aem.00688-15  1
2015 Tang Y, Werth CJ, Sanford RA, Singh R, Michelson K, Nobu M, Liu WT, Valocchi AJ. Immobilization of selenite via two parallel pathways during in situ bioremediation. Environmental Science & Technology. 49: 4543-50. PMID 25734534 DOI: 10.1021/Es506107R  1
2014 Dong Y, Sanford RA, Locke RA, Cann IK, Mackie RI, Fouke BW. Fe-oxide grain coatings support bacterial Fe-reducing metabolisms in 1.7-2.0 km-deep subsurface quartz arenite sandstone reservoirs of the Illinois Basin (USA). Frontiers in Microbiology. 5: 511. PMID 25324834 DOI: 10.3389/Fmicb.2014.00511  1
2014 Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT. Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle. Mbio. 5: e01193-14. PMID 24895307 DOI: 10.1128/Mbio.01193-14  1
2014 Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA. Refined NrfA phylogeny improves PCR-based nrfA gene detection. Applied and Environmental Microbiology. 80: 2110-9. PMID 24463965 DOI: 10.1128/Aem.03443-13  1
2014 Dong Y, Kumar CG, Chia N, Kim PJ, Miller PA, Price ND, Cann IK, Flynn TM, Sanford RA, Krapac IG, Locke RA, Hong PY, Tamaki H, Liu WT, Mackie RI, et al. Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir. Environmental Microbiology. 16: 1695-708. PMID 24238218 DOI: 10.1111/1462-2920.12325  1
2014 Basu A, Johnson TM, Sanford RA. Cr isotope fractionation factors for Cr(VI) reduction by a metabolically diverse group of bacteria Geochimica Et Cosmochimica Acta. 142: 349-361. DOI: 10.1016/j.gca.2014.07.024  1
2014 Basu A, Sanford RA, Johnson TM, Lundstrom CC, Löffler FE. Uranium isotopic fractionation factors during U(VI) reduction by bacterial isolates Geochimica Et Cosmochimica Acta. 136: 100-113. DOI: 10.1016/J.Gca.2014.02.041  1
2013 Flynn TM, Sanford RA, Ryu H, Bethke CM, Levine AD, Ashbolt NJ, Santo Domingo JW. Functional microbial diversity explains groundwater chemistry in a pristine aquifer. Bmc Microbiology. 13: 146. PMID 23800252 DOI: 10.1186/1471-2180-13-146  1
2013 Yoon S, Sanford RA, Löffler FE. Shewanella spp. Use acetate as an electron donor for denitrification but not ferric iron or fumarate reduction. Applied and Environmental Microbiology. 79: 2818-22. PMID 23396327 DOI: 10.1128/Aem.03872-12  1
2013 Kirk MF, Santillan EFU, Sanford RA, Altman SJ. CO2-induced shift in microbial activity affects carbon trapping and water quality in anoxic bioreactors Geochimica Et Cosmochimica Acta. 122: 198-208. DOI: 10.1016/J.Gca.2013.08.018  1
2012 Sanford RA, Wagner DD, Wu Q, Chee-Sanford JC, Thomas SH, Cruz-García C, Rodríguez G, Massol-Deyá A, Krishnani KK, Ritalahti KM, Nissen S, Konstantinidis KT, Löffler FE. Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils. Proceedings of the National Academy of Sciences of the United States of America. 109: 19709-14. PMID 23150571 DOI: 10.1073/Pnas.1211238109  1
2012 Flynn TM, Sanford RA, Santo Domingo JW, Ashbolt NJ, Levine AD, Bethke CM. The active bacterial community in a pristine confined aquifer Water Resources Research. 48. DOI: 10.1029/2011Wr011568  1
2011 Bethke CM, Sanford RA, Kirk MF, Jin Q, Flynn TM. The thermodynamic ladder in geomicrobiology American Journal of Science. 311: 183-210. DOI: 10.2475/03.2011.01  1
2010 Bopp CJ, Lundstrom CC, Johnson TM, Sanford RA, Long PE, Williams KH. Uranium 238U/235U isotope ratios as indicators of reduction: results from an in situ biostimulation experiment at Rifle, Colorado, U.S.A. Environmental Science & Technology. 44: 5927-33. PMID 20597538 DOI: 10.1021/es100643v  1
2010 Thomas SH, Sanford RA, Amos BK, Leigh MB, Cardenas E, Löffler FE. Unique ecophysiology among U(VI)-reducing bacteria as revealed by evaluation of oxygen metabolism in Anaeromyxobacter dehalogenans strain 2CP-C. Applied and Environmental Microbiology. 76: 176-83. PMID 19897758 DOI: 10.1128/Aem.01854-09  1
2009 Thomas SH, Padilla-Crespo E, Jardine PM, Sanford RA, Löffler FE. Diversity and distribution of anaeromyxobacter strains in a uranium-contaminated subsurface environment with a nonuniform groundwater flow. Applied and Environmental Microbiology. 75: 3679-87. PMID 19346346 DOI: 10.1128/Aem.02473-08  1
2009 Marshall MJ, Dohnalkova AC, Kennedy DW, Plymale AE, Thomas SH, Löffler FE, Sanford RA, Zachara JM, Fredrickson JK, Beliaev AS. Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C. Environmental Microbiology. 11: 534-43. PMID 19196283 DOI: 10.1111/J.1462-2920.2008.01795.X  1
2009 Park J, Sanford RA, Bethke CM. Microbial activity and chemical weathering in the Middendorf aquifer, South Carolina Chemical Geology. 258: 232-241. DOI: 10.1016/J.Chemgeo.2008.10.011  1
2009 Piggot AM, Fouke BW, Sivaguru M, Sanford RA, Gaskins HR. Change in zooxanthellae and mucocyte tissue density as an adaptive response to environmental stress by the coral, Montastraea annularis Marine Biology. 156: 2379-2389. DOI: 10.1007/S00227-009-1267-1  1
2008 Strycharz SM, Woodard TL, Johnson JP, Nevin KP, Sanford RA, Löffler FE, Lovley DR. Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi. Applied and Environmental Microbiology. 74: 5943-7. PMID 18658278 DOI: 10.1128/Aem.00961-08  1
2008 Thomas SH, Wagner RD, Arakaki AK, Skolnick J, Kirby JR, Shimkets LJ, Sanford RA, Löffler FE. The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria. Plos One. 3: e2103. PMID 18461135 DOI: 10.1371/Journal.Pone.0002103  1
2008 Kwon MJ, Sanford RA, Park J, Kirk MF, Bethke CM. Microbiological response to well pumping. Ground Water. 46: 286-94. PMID 18194327 DOI: 10.1111/J.1745-6584.2007.00401.X  1
2008 Bethke CM, Ding D, Jin Q, Sanford RA. Origin of microbiological zoning in groundwater flows Geology. 36: 739-742. DOI: 10.1130/G24859A.1  1
2008 Flynn TM, Sanford RA, Bethke CM. Attached and suspended microbial communities in a pristine confined aquifer Water Resources Research. 44. DOI: 10.1029/2007Wr006633  1
2007 Sanford RA, Wu Q, Sung Y, Thomas SH, Amos BK, Prince EK, Löffler FE. Hexavalent uranium supports growth of Anaeromyxobacter dehalogenans and Geobacter spp. with lower than predicted biomass yields. Environmental Microbiology. 9: 2885-93. PMID 17922770 DOI: 10.1111/J.1462-2920.2007.01405.X  1
2007 Klaus JS, Janse I, Heikoop JM, Sanford RA, Fouke BW. Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution. Environmental Microbiology. 9: 1291-305. PMID 17472641 DOI: 10.1111/J.1462-2920.2007.01249.X  1
2007 Mehnert E, Hwang HH, Johnson TM, Sanford RA, Beaumont WC, Holm TR. Denitrification in the shallow ground water of a tile-drained, agricultural watershed. Journal of Environmental Quality. 36: 80-90. PMID 17215215 DOI: 10.2134/jeq2006.0096  1
2006 Rademacher LK, Lundstrom CC, Johnson TM, Sanford RA, Zhao J, Zhang Z. Experimentally determined uranium isotope fractionation during reduction of hexavalent U by bacteria and zero valent iron. Environmental Science & Technology. 40: 6943-8. PMID 17153999 DOI: 10.1021/es0604360  1
2006 Roadcap GS, Sanford RA, Jin Q, Pardinas JR, Bethke CM. Extremely alkaline (pH > 12) ground water hosts diverse microbial community. Ground Water. 44: 511-7. PMID 16857028 DOI: 10.1111/J.1745-6584.2006.00199.X  1
2006 Brennan RA, Sanford RA, Werth CJ. Chitin and corncobs as electron donor sources for the reductive dechlorination of tetrachloroethene. Water Research. 40: 2125-34. PMID 16725176 DOI: 10.1016/J.Watres.2006.04.011  1
2006 Wu Q, Sanford RA, Löffler FE. Uranium(VI) reduction by Anaeromyxobacter dehalogenans strain 2CP-C. Applied and Environmental Microbiology. 72: 3608-14. PMID 16672509 DOI: 10.1128/Aem.72.5.3608-3614.2006  1
2006 Sung Y, Fletcher KE, Ritalahti KM, Apkarian RP, Ramos-Hernández N, Sanford RA, Mesbah NM, Löffler FE. Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium. Applied and Environmental Microbiology. 72: 2775-82. PMID 16597982 DOI: 10.1128/Aem.72.4.2775-2782.2006  1
2006 Brennan RA, Sanford RA, Werth CJ. Biodegradation of tetrachloroethene by chitin fermentation products in a continuous flow column system Journal of Environmental Engineering. 132: 664-673. DOI: 10.1061/(Asce)0733-9372(2006)132:6(664)  1
2006 Park J, Sanford RA, Bethke CM. Geochemical and microbiological zonation of the Middendorf aquifer, South Carolina Chemical Geology. 230: 88-104. DOI: 10.1016/J.Chemgeo.2005.12.001  1
2005 Löffler FE, Sanford RA. Analysis of trace hydrogen metabolism. Methods in Enzymology. 397: 222-37. PMID 16260294 DOI: 10.1016/S0076-6879(05)97013-4  1
2005 Löffler FE, Sanford RA, Ritalahti KM. Enrichment, cultivation, and detection of reductively dechlorinating bacteria. Methods in Enzymology. 397: 77-111. PMID 16260286 DOI: 10.1016/S0076-6879(05)97005-5  1
2005 Cupples AM, Sanford RA, Sims GK. Dehalogenation of the herbicides bromoxynil (3,5-dibromo-4-hydroxybenzonitrile) and ioxynil (3,5-diiodino-4-hydroxybenzonitrile) by Desulfitobacterium chlororespirans. Applied and Environmental Microbiology. 71: 3741-6. PMID 16000784 DOI: 10.1128/Aem.71.7.3741-3746.2005  1
2005 Shimomura T, Sanford RA. Reductive dechlorination of tetrachloroethene in a sand reactor using a potentiostat Journal of Environmental Quality. 34: 1435-1438. PMID 15998866 DOI: 10.2134/jeq2004.0265  1
2004 He Q, Sanford RA. Acetate threshold concentrations suggest varying energy requirements during anaerobic respiration by Anaeromyxobacter dehalogenans Applied and Environmental Microbiology. 70: 6940-6943. PMID 15528569 DOI: 10.1128/AEM.70.11.6940-6943.2004  1
2004 He Q, Sanford RA. The generation of high biomass from chlororespiring bacteria using a continuous fed-batch bioreactor. Applied Microbiology and Biotechnology. 65: 377-82. PMID 15179526 DOI: 10.1007/s00253-004-1591-9  1
2004 Kirk MF, Holm TR, Park J, Jin Q, Sanford RA, Fouke BW, Bethke CM. Bacterial sulfate reduction limits natural arsenic contamination in groundwater Geology. 32: 953-956. DOI: 10.1130/G20842.1  1
2003 Nambi IM, Werth CJ, Sanford RA, Valocchi AJ. Pore-scale analysis of anaerobic halorespiring bacterial growth along the transverse mixing zone of an etched silicon pore network. Environmental Science & Technology. 37: 5617-24. PMID 14717172 DOI: 10.1021/Es034271W  1
2003 Sung Y, Ritalahti KM, Sanford RA, Urbance JW, Flynn SJ, Tiedje JM, Löffler FE. Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Applied and Environmental Microbiology. 69: 2964-74. PMID 12732573 DOI: 10.1128/Aem.69.5.2964-2974.2003  1
2003 He Q, Sanford RA. Characterization of Fe(III) reduction by chlororespiring Anaeromxyobacter dehalogenans Applied and Environmental Microbiology. 69: 2712-2718. PMID 12732541 DOI: 10.1128/AEM.69.5.2712-2718.2003  1
2002 He Q, Sanford RA. Induction characteristics of reductive dehalogenation in the ortho-halophenol-respiring bacterium, Anaeromyxobacter dehalogenans Biodegradation. 13: 307-316. PMID 12688583 DOI: 10.1023/A:1022342421909  1
2002 Brennan RA, Sanford RA. Continuous steady-state method using tenax for delivering tetrachloroethene to chloro-respiring bacteria. Applied and Environmental Microbiology. 68: 1464-7. PMID 11872503 DOI: 10.1128/Aem.68.3.1464-1467.2002  1
2002 Sanford RA, Cole JR, Tiedje JM. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Applied and Environmental Microbiology. 68: 893-900. PMID 11823233 DOI: 10.1128/Aem.68.2.893-900.2002  1
2001 Vera SM, Werth CJ, Sanford RA. Evaluation of different polymeric organic materials for creating conditions that favor reductive processes in groundwater Bioremediation Journal. 5: 169-181. DOI: 10.1080/20018891079267  1
2000 Sun B, Cole JR, Sanford RA, Tiedje JM. Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Applied and Environmental Microbiology. 66: 2408-13. PMID 10831418 DOI: 10.1128/Aem.66.6.2408-2413.2000  1
2000 Rockne KJ, Chee-Sanford JC, Sanford RA, Hedlund BP, Staley JT, Strand SE. Anaerobic naphthalene degradation by microbial pure cultures under nitrate-reducing conditions. Applied and Environmental Microbiology. 66: 1595-601. PMID 10742247 DOI: 10.1128/Aem.66.4.1595-1601.2000  1
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