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Sebastian Proost - Publications

Affiliations: 
2007-2012 Ghent University, Ghent, Vlaanderen, Belgium 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Goosen C, Proost S, Baumgartner J, Mallick K, Tito RY, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. Associations of HIV and iron status with gut microbiota composition, gut inflammation, and gut integrity in South African school-age children: A two-way factorial case-control study. Journal of Human Nutrition and Dietetics : the Official Journal of the British Dietetic Association. PMID 36992541 DOI: 10.1111/jhn.13171  0.396
2022 Si J, Vázquez-Castellanos JF, Gregory AC, Decommer L, Rymenans L, Proost S, Centelles Lodeiro J, Weger M, Notdurfter M, Leitner C, Santer P, Rungger G, Willeit J, Willeit P, Pechlaner R, et al. Long-term life history predicts current gut microbiome in a population-based cohort study. Nature Aging. 2: 885-895. PMID 37118287 DOI: 10.1038/s43587-022-00286-w  0.423
2022 Ebrahim Z, Proost S, Tito RY, Raes J, Glorieux G, Moosa MR, Blaauw R. The Effect of ß-Glucan Prebiotic on Kidney Function, Uremic Toxins and Gut Microbiome in Stage 3 to 5 Chronic Kidney Disease (CKD) Predialysis Participants: A Randomized Controlled Trial. Nutrients. 14. PMID 35215453 DOI: 10.3390/nu14040805  0.411
2022 Goosen C, Proost S, Tito RY, Baumgartner J, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. The effect of oral iron supplementation on the gut microbiota, gut inflammation, and iron status in iron-depleted South African school-age children with virally suppressed HIV and without HIV. European Journal of Nutrition. PMID 34997267 DOI: 10.1007/s00394-021-02793-9  0.382
2021 Julca I, Ferrari C, Flores-Tornero M, Proost S, Lindner AC, Hackenberg D, Steinbachová L, Michaelidis C, Gomes Pereira S, Misra CS, Kawashima T, Borg M, Berger F, Goldberg J, Johnson M, et al. Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants. PMID 34253868 DOI: 10.1038/s41477-021-00958-2  0.415
2021 Naake T, Maeda HA, Proost S, Tohge T, Fernie AR. Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily. Plant Physiology. 185: 857-875. PMID 33793871 DOI: 10.1093/plphys/kiaa086  0.576
2020 Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, Forslund SK, Assmann K, Valles-Colomer M, Nguyen TTD, Proost S, Prifti E, Tremaroli V, Pons N, Le Chatelier E, et al. Statin therapy is associated with lower prevalence of gut microbiota dysbiosis. Nature. 581: 310-315. PMID 32433607 DOI: 10.1038/S41586-020-2269-X  0.396
2019 Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications. 10: 737. PMID 30760717 DOI: 10.1038/S41467-019-08703-2  0.322
2019 Flores-Tornero M, Proost S, Mutwil M, Scutt CP, Dresselhaus T, Sprunck S. Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells. Plant Reproduction. 32: 15-27. PMID 30707279 DOI: 10.1007/s00497-019-00361-0  0.374
2019 Perez de Souza L, Scossa F, Proost S, Bitocchi E, Papa R, Tohge T, Fernie AR. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal : For Cell and Molecular Biology. 97: 1132-1153. PMID 30480348 DOI: 10.1111/tpj.14178  0.329
2018 Proost S, Mutwil M. CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. Nucleic Acids Research. 46: W133-W140. PMID 29718322 DOI: 10.1093/nar/gky336  0.411
2018 Ferrari C, Proost S, Ruprecht C, Mutwil M. PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research. 46: W76-W83. PMID 29718316 DOI: 10.1093/nar/gky298  0.315
2017 Proost S, Krawczyk A, Mutwil M. LSTrAP: efficiently combining RNA sequencing data into co-expression networks. Bmc Bioinformatics. 18: 444. PMID 29017446 DOI: 10.1186/s12859-017-1861-z  0.314
2017 Sibout R, Proost S, Hansen BO, Vaid N, Giorgi FM, Ho-Yue-Kuang S, Legée F, Cézart L, Bouchabké-Coussa O, Soulhat C, Provart N, Pasha A, Le Bris P, Roujol D, Hofte H, et al. Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. The New Phytologist. PMID 28617955 DOI: 10.1111/Nph.14635  0.418
2017 Ruprecht C, Proost S, Hernandez-Coronado M, Ortiz-Ramirez C, Lang D, Rensing SA, Becker JD, Vandepoele K, Mutwil M. Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal : For Cell and Molecular Biology. PMID 28161902 DOI: 10.1111/tpj.13502  0.768
2017 Ruprecht C, Vaid N, Proost S, Persson S, Mutwil M. Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science. 22: 298-307. PMID 28126286 DOI: 10.1016/J.Tplants.2016.12.011  0.443
2017 Proost S, Mutwil M. PlaNet: Comparative Co-Expression Network Analyses for Plants. Methods in Molecular Biology (Clifton, N.J.). 1533: 213-227. PMID 27987173 DOI: 10.1007/978-1-4939-6658-5_12  0.334
2016 Proost S, Mutwil M. Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology. 30: 143-50. PMID 26990519 DOI: 10.1016/j.pbi.2016.02.010  0.328
2015 Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, et al. Corrigendum: The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47: 304. PMID 25711871 DOI: 10.1038/Ng0315-304A  0.629
2015 Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, et al. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47: 65-72. PMID 25420146 DOI: 10.1038/Ng.3149  0.746
2015 Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Research. 43: D974-81. PMID 25324309 DOI: 10.1093/Nar/Gku986  0.751
2015 Cai J, Liu X, Vanneste K, Proost S, Tsai W, Liu K, Chen L, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao Y, Pan Z, et al. Erratum: Corrigendum: The genome sequence of the orchid Phalaenopsis equestris Nature Genetics. 47: 186-186. DOI: 10.1038/ng0215-186  0.501
2013 Van Bel M, Proost S, Van Neste C, Deforce D, Van de Peer Y, Vandepoele K. TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. Genome Biology. 14: R134. PMID 24330842 DOI: 10.1186/Gb-2013-14-12-R134  0.751
2013 Ruelens P, de Maagd RA, Proost S, Theißen G, Geuten K, Kaufmann K. FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes. Nature Communications. 4: 2280. PMID 23955420 DOI: 10.1038/ncomms3280  0.412
2012 Vekemans D, Proost S, Vanneste K, Coenen H, Viaene T, Ruelens P, Maere S, Van de Peer Y, Geuten K. Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification. Molecular Biology and Evolution. 29: 3793-806. PMID 22821009 DOI: 10.1093/molbev/mss183  0.708
2012 Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K. Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiology. 158: 590-600. PMID 22198273 DOI: 10.1104/pp.111.189514  0.783
2012 Proost S, Fostier J, De Witte D, Dhoedt B, Demeester P, Van de Peer Y, Vandepoele K. i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets. Nucleic Acids Research. 40: e11. PMID 22102584 DOI: 10.1093/nar/gkr955  0.818
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  0.741
2011 Proost S, Pattyn P, Gerats T, Van de Peer Y. Journey through the past: 150 million years of plant genome evolution. The Plant Journal : For Cell and Molecular Biology. 66: 58-65. PMID 21443623 DOI: 10.1111/j.1365-313X.2011.04521.x  0.763
2011 Fostier J, Proost S, Dhoedt B, Saeys Y, Demeester P, Van de Peer Y, Vandepoele K. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. Bioinformatics (Oxford, England). 27: 749-56. PMID 21216775 DOI: 10.1093/bioinformatics/btr008  0.787
2010 Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, ... ... Proost S, et al. The genome of the domesticated apple (Malus × domestica Borkh.). Nature Genetics. 42: 833-9. PMID 20802477 DOI: 10.1038/Ng.654  0.706
2009 Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K. PLAZA: a comparative genomics resource to study gene and genome evolution in plants. The Plant Cell. 21: 3718-31. PMID 20040540 DOI: 10.1105/tpc.109.071506  0.834
2009 Van de Peer Y, Fawcett JA, Proost S, Sterck L, Vandepoele K. The flowering world: a tale of duplications. Trends in Plant Science. 14: 680-8. PMID 19818673 DOI: 10.1016/j.tplants.2009.09.001  0.806
2009 De Bodt S, Proost S, Vandepoele K, Rouzé P, Van de Peer Y. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. Bmc Genomics. 10: 288. PMID 19563678 DOI: 10.1186/1471-2164-10-288  0.703
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