Stephen J. Callister, Ph.D. - Publications

Affiliations: 
2004 Michigan State University, East Lansing, MI 
Area:
Molecular Biology, Microbiology Biology, Environmental Engineering

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Waltman PH, Guo J, Reistetter EN, Purvine S, Ansong CK, van Baren MJ, Wong CH, Wei CL, Smith RD, Callister SJ, Stuart JM, Worden AZ. Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla. Plos One. 11: e0155839. PMID 27434306 DOI: 10.1371/Journal.Pone.0155839  0.36
2016 Otwell AE, Callister SJ, Zink EM, Smith RD, Richardson RE. Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium. Frontiers in Microbiology. 7: 191. PMID 26925055 DOI: 10.3389/Fmicb.2016.00191  0.36
2015 Burnet MC, Dohnalkova AC, Neumann AP, Lipton MS, Smith RD, Suen G, Callister SJ. Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85. Plos One. 10: e0143809. PMID 26629814 DOI: 10.1371/Journal.Pone.0143809  0.36
2015 Li Z, Kim DD, Nelson OD, Otwell AE, Richardson RE, Callister SJ, Lin H. Molecular dissection of a putative iron reductase from Desulfotomaculum reducens MI-1. Biochemical and Biophysical Research Communications. PMID 26454174 DOI: 10.1016/J.Bbrc.2015.10.016  0.36
2015 Mann BF, Chen H, Herndon EM, Chu RK, Tolic N, Portier EF, Roy Chowdhury T, Robinson EW, Callister SJ, Wullschleger SD, Graham DE, Liang L, Gu B. Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry. Plos One. 10: e0130557. PMID 26068586 DOI: 10.1371/Journal.Pone.0130557  0.36
2015 Otwell AE, Sherwood RW, Zhang S, Nelson OD, Li Z, Lin H, Callister SJ, Richardson RE. Identification of proteins capable of metal reduction from the proteome of the Gram-positive bacterium Desulfotomaculum reducens MI-1 using an NADH-based activity assay. Environmental Microbiology. 17: 1977-90. PMID 25389064 DOI: 10.1111/1462-2920.12673  0.36
2014 Boaro AA, Kim YM, Konopka AE, Callister SJ, Ahring BK. Integrated 'omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture. Fems Microbiology Ecology. 90: 802-15. PMID 25290699 DOI: 10.1111/1574-6941.12435  0.36
2014 Peña-Castillo L, Mercer RG, Gurinovich A, Callister SJ, Wright AT, Westbye AB, Beatty JT, Lang AS. Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides. Bmc Genomics. 15: 730. PMID 25164283 DOI: 10.1186/1471-2164-15-730  0.36
2014 Aryal UK, Callister SJ, McMahon BH, McCue LA, Brown J, Stöckel J, Liberton M, Mishra S, Zhang X, Nicora CD, Angel TE, Koppenaal DW, Smith RD, Pakrasi HB, Sherman LA. Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece. Journal of Proteome Research. 13: 3262-76. PMID 24846609 DOI: 10.1021/Pr5000889  0.36
2013 Anderson LN, Culley DE, Hofstad BA, Chauvigné-Hines LM, Zink EM, Purvine SO, Smith RD, Callister SJ, Magnuson JM, Wright AT. Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30. Molecular Biosystems. 9: 2992-3000. PMID 24121482 DOI: 10.1039/C3Mb70333A  0.36
2013 Curtis DS, Phillips AR, Callister SJ, Conlan S, McCue LA. SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes. Bioinformatics (Oxford, England). 29: 2641-2. PMID 23956303 DOI: 10.1093/bioinformatics/btt454  0.36
2013 Nicora CD, Anderson BJ, Callister SJ, Norbeck AD, Purvine SO, Jansson JK, Mason OU, David MM, Jurelevicius D, Smith RD, Lipton MS. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics. 13: 2776-85. PMID 23776032 DOI: 10.1002/Pmic.201300003  0.36
2013 Isanapong J, Sealy Hambright W, Willis AG, Boonmee A, Callister SJ, Burnum KE, PaÅ¡a-Tolić L, Nicora CD, Wertz JT, Schmidt TM, Rodrigues JL. Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. The Isme Journal. 7: 1803-13. PMID 23657364 DOI: 10.1038/Ismej.2013.74  0.36
2013 Robidart J, Callister SJ, Song P, Nicora CD, Wheat CG, Girguis PR. Characterizing microbial community and geochemical dynamics at hydrothermal vents using osmotically driven continuous fluid samplers. Environmental Science & Technology. 47: 4399-407. PMID 23495803 DOI: 10.1021/Es3037302  0.36
2013 LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ, Metz TO, Anderson GA, Smith RD. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis. Bmc Bioinformatics. 14: 49. PMID 23398735 DOI: 10.1186/1471-2105-14-49  0.36
2013 Aryal UK, Callister SJ, Mishra S, Zhang X, Shutthanandan JI, Angel TE, Shukla AK, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Sherman L. Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced Hâ‚‚ production. Applied and Environmental Microbiology. 79: 1070-7. PMID 23204418 DOI: 10.1128/Aem.02864-12  0.36
2012 Chauvigné-Hines LM, Anderson LN, Weaver HM, Brown JN, Koech PK, Nicora CD, Hofstad BA, Smith RD, Wilkins MJ, Callister SJ, Wright AT. Suite of activity-based probes for cellulose-degrading enzymes. Journal of the American Chemical Society. 134: 20521-32. PMID 23176123 DOI: 10.1021/Ja309790W  0.36
2012 Cao L, Bryant DA, Schepmoes AA, Vogl K, Smith RD, Lipton MS, Callister SJ. Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically. Photosynthesis Research. 110: 153-68. PMID 22249883 DOI: 10.1007/S11120-011-9711-8  0.36
2012 Hugo A, Baxter DJ, Cannon WR, Kalyanaraman A, Kulkarni G, Callister SJ. Proteotyping of microbial communities by optimization of tandem mass spectrometry data interpretation. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 225-34. PMID 22174278  0.36
2011 Parnell JJ, Callister SJ, Rompato G, Nicora CD, PaÅ¡a-Tolić L, Williamson A, Pfrender ME. Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock. Scientific Reports. 1: 25. PMID 22355544 DOI: 10.1038/Srep00025  0.36
2011 Cannon WR, Rawlins MM, Baxter DJ, Callister SJ, Lipton MS, Bryant DA. Large improvements in MS/MS-based peptide identification rates using a hybrid analysis. Journal of Proteome Research. 10: 2306-17. PMID 21391700 DOI: 10.1021/Pr101130B  0.36
2011 Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI). Microbial Biotechnology. 4: 55-63. PMID 21255372 DOI: 10.1111/J.1751-7915.2010.00194.X  0.36
2011 Burnum KE, Callister SJ, Nicora CD, Purvine SO, Hugenholtz P, Warnecke F, Scheffrahn RH, Smith RD, Lipton MS. Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. The Isme Journal. 5: 161-4. PMID 20613792 DOI: 10.1038/Ismej.2010.97  0.36
2010 Turse JE, Marshall MJ, Fredrickson JK, Lipton MS, Callister SJ. An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences. Plos One. 5: e13968. PMID 21103051 DOI: 10.1371/Journal.Pone.0013968  0.36
2010 Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H, Smith RD, Lovley DR, Lipton MS, Long PE. Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environmental Science & Technology. 44: 8897-903. PMID 21058662 DOI: 10.1021/Es101029F  0.36
2010 Mercer RG, Callister SJ, Lipton MS, Pasa-Tolic L, Strnad H, Paces V, Beatty JT, Lang AS. Loss of the response regulator CtrA causes pleiotropic effects on gene expression but does not affect growth phase regulation in Rhodobacter capsulatus. Journal of Bacteriology. 192: 2701-10. PMID 20363938 DOI: 10.1128/Jb.00160-10  0.36
2010 Maqbool SB, Ahmad A, Dhawan A, Callister SJ, Tsoi T, Sticklen MB, Hashsham SA. Response of selected genes of burkholderia xenovorans strain lb400 to onion extract using a DNA:RNA hybrid capture detection system* Research Journal of Microbiology. 5: 1100-1113. DOI: 10.3923/Jm.2006.378.391  0.36
2009 Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, et al. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Applied and Environmental Microbiology. 75: 6591-9. PMID 19717633 DOI: 10.1128/AEM.01064-09  0.36
2009 Karpievitch YV, Taverner T, Adkins JN, Callister SJ, Anderson GA, Smith RD, Dabney AR. Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. Bioinformatics (Oxford, England). 25: 2573-80. PMID 19602524 DOI: 10.1093/Bioinformatics/Btp426  0.36
2009 Callister SJ, Parnell JJ, Pfrender ME, Hashsham SA. Relating perturbation magnitude to temporal gene expression in biological systems. Bmc Research Notes. 2: 43. PMID 19298657 DOI: 10.1186/1756-0500-2-43  0.36
2008 Eraso JM, Roh JH, Zeng X, Callister SJ, Lipton MS, Kaplan S. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: combined transcriptome and proteome analysis. Journal of Bacteriology. 190: 4831-48. PMID 18487335 DOI: 10.1128/Jb.00301-08  0.36
2008 Sowell SM, Norbeck AD, Lipton MS, Nicora CD, Callister SJ, Smith RD, Barofsky DF, Giovannoni SJ. Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique". Applied and Environmental Microbiology. 74: 4091-100. PMID 18469119 DOI: 10.1128/Aem.00599-08  0.36
2008 Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. A computational strategy to analyze label-free temporal bottom-up proteomics data. Journal of Proteome Research. 7: 2595-604. PMID 18442284 DOI: 10.1021/Pr0704837  0.36
2008 Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS. Comparative bacterial proteomics: analysis of the core genome concept. Plos One. 3: e1542. PMID 18253490 DOI: 10.1371/Journal.Pone.0001542  0.36
2007 Zeng X, Roh JH, Callister SJ, Tavano CL, Donohue TJ, Lipton MS, Kaplan S. Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: identification of new proteins. Journal of Bacteriology. 189: 7464-74. PMID 17704227 DOI: 10.1128/Jb.00946-07  0.36
2007 Luo Q, Hixson KK, Callister SJ, Lipton MS, Morris BE, Krumholz LR. Proteome analysis of Desulfovibrio desulfuricans G20 mutants using the accurate mass and time (AMT) tag approach. Journal of Proteome Research. 6: 3042-53. PMID 17602684 DOI: 10.1021/Pr070127O  0.36
2006 Norbeck AD, Callister SJ, Monroe ME, Jaitly N, Elias DA, Lipton MS, Smith RD. Proteomic approaches to bacterial differentiation. Journal of Microbiological Methods. 67: 473-86. PMID 16919344 DOI: 10.1016/J.Mimet.2006.04.024  0.36
2006 Callister SJ, Dominguez MA, Nicora CD, Zeng X, Tavano CL, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures. Journal of Proteome Research. 5: 1940-7. PMID 16889416 DOI: 10.1021/Pr060050O  0.36
2006 Callister SJ, Nicora CD, Zeng X, Roh JH, Dominguez MA, Tavano CL, Monroe ME, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes. Journal of Microbiological Methods. 67: 424-36. PMID 16828186 DOI: 10.1016/J.Mimet.2006.04.021  0.36
2006 Callister SJ, Barry RC, Adkins JN, Johnson ET, Qian WJ, Webb-Robertson BJ, Smith RD, Lipton MS. Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics. Journal of Proteome Research. 5: 277-86. PMID 16457593 DOI: 10.1021/Pr050300L  0.36
2006 Fang R, Elias DA, Monroe ME, Shen Y, McIntosh M, Wang P, Goddard CD, Callister SJ, Moore RJ, Gorby YA, Adkins JN, Fredrickson JK, Lipton MS, Smith RD. Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach. Molecular & Cellular Proteomics : McP. 5: 714-25. PMID 16401633 DOI: 10.1074/Mcp.M500301-Mcp200  0.36
2004 Ayala-Del-Río HL, Callister SJ, Criddle CS, Tiedje JM. Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors. Applied and Environmental Microbiology. 70: 4950-60. PMID 15294835 DOI: 10.1128/Aem.70.8.4950-4960.2004  0.36
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