| Year |
Citation |
Score |
| 2020 |
Madigan MT, Kempher ML, Bender KS, Jung DO, Sattley WM, Lindemann SR, Konopka AE, Dohnalkova AC, Fredrickson JK. A Green Sulfur Bacterium From Epsomitic Hot Lake, Washington, USA. Canadian Journal of Microbiology. PMID 33136441 DOI: 10.1139/cjm-2020-0462 |
0.632 |
|
| 2020 |
Anderton CR, Mobberley JM, Cole JK, Nunez JR, Starke R, Boaro AA, Yesiltepe Y, Morton BR, Cory AB, Cardamone HC, Hofmockel KS, Lipton MS, Moran JJ, Renslow RS, Fredrickson JK, et al. Nitrogen Source Governs Community Carbon Metabolism in a Model Hypersaline Benthic Phototrophic Biofilm. Msystems. 5. PMID 32518194 DOI: 10.1128/mSystems.00260-20 |
0.65 |
|
| 2019 |
Lee JY, Haruta S, Kato S, Bernstein HC, Lindemann SR, Lee DY, Fredrickson JK, Song HS. Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data. Frontiers in Microbiology. 10: 3049. PMID 32038529 DOI: 10.3389/Fmicb.2019.03049 |
0.651 |
|
| 2019 |
Song HS, Lee JY, Haruta S, Nelson WC, Lee DY, Lindemann SR, Fredrickson JK, Bernstein HC. Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities. Frontiers in Microbiology. 10: 1264. PMID 31263456 DOI: 10.3389/Fmicb.2019.01264 |
0.658 |
|
| 2018 |
Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J. Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology. Nature Communications. 9: 585. PMID 29422537 DOI: 10.1038/S41467-018-02922-9 |
0.366 |
|
| 2017 |
Yang Y, Wu Y, Hu Y, Wang H, Guo L, Fredrickson JK, Cao B. Harnessing the periplasm of bacteria to develop biocatalyst for biosynthesis of highly pure chemicals. Applied and Environmental Microbiology. PMID 29079618 DOI: 10.1128/Aem.01693-17 |
0.311 |
|
| 2017 |
Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD. Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process. Frontiers in Microbiology. 8: 1866. PMID 29046664 DOI: 10.3389/Fmicb.2017.01866 |
0.33 |
|
| 2017 |
Bernstein HC, Brislawn CJ, Dana K, Flores-Wentz T, Cory AB, Fansler SJ, Fredrickson JK, Moran JJ. Primary and heterotrophic productivity relate to multi-kingdom diversity in a hypersaline mat. Fems Microbiology Ecology. PMID 29045626 DOI: 10.1093/Femsec/Fix121 |
0.36 |
|
| 2017 |
Hou Z, Nelson WC, Stegen JC, Murray CJ, Arntzen E, Crump AR, Kennedy DW, Perkins MC, Scheibe TD, Fredrickson JK, Zachara JM. Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies. Scientific Reports. 7: 12006. PMID 28931901 DOI: 10.1038/S41598-017-12275-W |
0.392 |
|
| 2017 |
Lindemann SR, Mobberley JM, Cole JK, Markillie LM, Taylor RC, Huang E, Chrisler WB, Wiley HS, Lipton MS, Nelson WC, Fredrickson JK, Romine MF. Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach. Frontiers in Microbiology. 8: 1020. PMID 28659875 DOI: 10.3389/Fmicb.2017.01020 |
0.685 |
|
| 2017 |
Li M, Gao Y, Qian WJ, Shi L, Liu Y, Nelson WC, Nicora CD, Resch CT, Thompson C, Yan S, Fredrickson JK, Zachara JM, Liu C. Targeted Quantification of Functional Enzyme Dynamics in Environmental Samples for Microbially Mediated Biogeochemical Processes. Environmental Microbiology Reports. PMID 28618201 DOI: 10.1111/1758-2229.12558 |
0.304 |
|
| 2017 |
Liu Y, Liu C, Nelson WC, Shi L, Xu F, Liu Y, Yan A, Zhong L, Thompson CJ, Fredrickson JK, Zachara J. Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns. Environmental Science & Technology. PMID 28391700 DOI: 10.1021/Acs.Est.6B05018 |
0.333 |
|
| 2017 |
Ha PT, Lindemann SR, Shi L, Dohnalkova AC, Fredrickson JK, Madigan MT, Beyenal H. Syntrophic anaerobic photosynthesis via direct interspecies electron transfer. Nature Communications. 8: 13924. PMID 28067226 DOI: 10.1038/Ncomms13924 |
0.671 |
|
| 2017 |
Goldman AE, Graham EB, Crump AR, Kennedy DW, Romero EB, Anderson CG, Dana KL, Resch CT, Fredrickson JK, Stegen JC. Carbon cycling at the aquatic-terrestrial interface is linked to parafluvial hyporheic zone inundation history Biogeosciences Discussions. 1-20. DOI: 10.5194/Bg-2017-28 |
0.42 |
|
| 2017 |
Goldman AE, Graham EB, Crump AR, Kennedy DW, Romero EB, Anderson CG, Dana KL, Resch CT, Fredrickson JK, Stegen JC. Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history Biogeosciences. 14: 4229-4241. DOI: 10.5194/Bg-14-4229-2017 |
0.417 |
|
| 2017 |
Renslow RS, Ahmed B, Nuñez JR, Cao B, Majors PD, Fredrickson JK, Beyenal H. Modeling Substrate Utilization, Metabolite Production, and Uranium Immobilization in Shewanella oneidensis Biofilms Frontiers in Environmental Science. 5. DOI: 10.3389/Fenvs.2017.00030 |
0.318 |
|
| 2016 |
Graham EB, Crump AR, Resch CT, Fansler S, Arntzen E, Kennedy DW, Fredrickson JK, Stegen JC. Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism. Frontiers in Microbiology. 7: 1949. PMID 28123379 DOI: 10.3389/Fmicb.2016.01949 |
0.374 |
|
| 2016 |
Bernstein HC, Brislawn C, Renslow RS, Dana K, Morton B, Lindemann SR, Song HS, Atci E, Beyenal H, Fredrickson JK, Jansson JK, Moran JJ. Trade-offs between microbiome diversity and productivity in a stratified microbial mat. The Isme Journal. PMID 27801910 DOI: 10.1038/Ismej.2016.133 |
0.653 |
|
| 2016 |
Ding Y, Zhou Y, Yao J, Szymanski C, Fredrickson JK, Shi L, Cao B, Zhu Z, Yu XY. In Situ Molecular Imaging of the Biofilm and Its Matrix. Analytical Chemistry. PMID 27709903 DOI: 10.1021/Acs.Analchem.6B03909 |
0.35 |
|
| 2016 |
Shi L, Dong H, Reguera G, Beyenal H, Lu A, Liu J, Yu HQ, Fredrickson JK. Extracellular electron transfer mechanisms between microorganisms and minerals. Nature Reviews. Microbiology. PMID 27573579 DOI: 10.1038/Nrmicro.2016.93 |
0.335 |
|
| 2016 |
Stegen JC, Konopka A, McKinley JP, Murray C, Lin X, Miller MD, Kennedy DW, Miller EA, Resch CT, Fredrickson JK. Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies. Scientific Reports. 6: 30553. PMID 27469056 DOI: 10.1038/Srep30553 |
0.395 |
|
| 2016 |
Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS. Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth. Mbio. 7. PMID 27460798 DOI: 10.1128/Mbio.00949-16 |
0.338 |
|
| 2016 |
Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M. Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover. Nature Communications. 7: 11237. PMID 27052662 DOI: 10.1038/Ncomms11237 |
0.378 |
|
| 2016 |
Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D. Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1. Microbiology (Reading, England). PMID 27010745 DOI: 10.1099/Mic.0.000285 |
0.331 |
|
| 2016 |
Lindemann SR, Bernstein HC, Song HS, Fredrickson JK, Fields MW, Shou W, Johnson DR, Beliaev AS. Engineering microbial consortia for controllable outputs. The Isme Journal. PMID 26967105 DOI: 10.1038/Ismej.2016.26 |
0.672 |
|
| 2016 |
Klotz MG, Bryant DA, Fredrickson JK, Inskeep WP, Kühl M. Editorial: Systems Biology and Ecology of Microbial Mat Communities. Frontiers in Microbiology. 7: 115. PMID 26903994 DOI: 10.3389/Fmicb.2016.00115 |
0.418 |
|
| 2016 |
Mohamed A, Ewing T, Lindemann SR, Fredrickson JK, Beyenal H. Autonomous Device for Evaluating the Field Performance of Microbial Fuel Cells in Remote Areas Journal of the Electrochemical Society. 164: H3030-H3036. DOI: 10.1149/2.0041703Jes |
0.598 |
|
| 2016 |
Zachara JM, Moran JJ, Resch CT, Lindemann SR, Felmy AR, Bowden ME, Cory AB, Fredrickson JK. Geo- and biogeochemical processes in a heliothermal hypersaline lake Geochimica Et Cosmochimica Acta. 181: 144-163. DOI: 10.1016/J.Gca.2016.02.001 |
0.65 |
|
| 2015 |
Song HS, Renslow RS, Fredrickson JK, Lindemann SR. Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities. Frontiers in Microbiology. 6: 1298. PMID 26648912 DOI: 10.3389/Fmicb.2015.01298 |
0.657 |
|
| 2015 |
Liu Y, Fredrickson JK, Zachara JM, Shi L. Direct involvement of ombB, omaB, and omcB genes in extracellular reduction of Fe(III) by Geobacter sulfurreducens PCA. Frontiers in Microbiology. 6: 1075. PMID 26483786 DOI: 10.3389/Fmicb.2015.01075 |
0.327 |
|
| 2015 |
Ha PT, Renslow RS, Atci E, Reardon PN, Lindemann SR, Fredrickson JK, Call DR, Beyenal H. Regulation of electron transfer processes affects phototrophic mat structure and activity. Frontiers in Microbiology. 6: 909. PMID 26388853 DOI: 10.3389/Fmicb.2015.00909 |
0.659 |
|
| 2015 |
Yan S, Liu Y, Liu C, Shi L, Shang J, Shan H, Zachara J, Fredrickson J, Kennedy D, Resch CT, Thompson C, Fansler S. Nitrate bioreduction in redox-variable low permeability sediments. The Science of the Total Environment. 539: 185-195. PMID 26363392 DOI: 10.1016/J.Scitotenv.2015.08.122 |
0.342 |
|
| 2015 |
Edwards MJ, White GF, Norman M, Tome-Fernandez A, Ainsworth E, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer. Scientific Reports. 5: 11677. PMID 26126857 DOI: 10.1038/Srep11677 |
0.35 |
|
| 2015 |
Fredrickson JK. ECOLOGY. Ecological communities by design. Science (New York, N.Y.). 348: 1425-7. PMID 26113703 DOI: 10.1126/Science.Aab0946 |
0.364 |
|
| 2015 |
Stegen JC, Lin X, Fredrickson JK, Konopka AE. Estimating and mapping ecological processes influencing microbial community assembly. Frontiers in Microbiology. 6: 370. PMID 25983725 DOI: 10.3389/Fmicb.2015.00370 |
0.357 |
|
| 2015 |
Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Frontiers in Microbiology. 6: 209. PMID 25941514 DOI: 10.3389/Fmicb.2015.00209 |
0.366 |
|
| 2015 |
Lee JH, Fredrickson JK, Plymale AE, Dohnalkova AC, Resch CT, McKinley JP, Shi L. An autotrophic H2 -oxidizing, nitrate-respiring, Tc(VII)-reducing Acidovorax sp. isolated from a subsurface oxic-anoxic transition zone. Environmental Microbiology Reports. 7: 395-403. PMID 25558059 DOI: 10.1111/1758-2229.12263 |
0.314 |
|
| 2015 |
Konopka A, Lindemann S, Fredrickson J. Dynamics in microbial communities: unraveling mechanisms to identify principles. The Isme Journal. 9: 1488-95. PMID 25526370 DOI: 10.1038/Ismej.2014.251 |
0.654 |
|
| 2015 |
Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA. Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum. Environmental Microbiology Reports. 7: 204-10. PMID 25345570 DOI: 10.1111/1758-2229.12227 |
0.31 |
|
| 2015 |
Wang Z, Shi Z, Shi L, White GF, Richardson DJ, Clarke TA, Fredrickson JK, Zachara JM. Effects of soluble flavin on heterogeneous electron transfer between surface-exposed bacterial cytochromes and iron oxides Geochimica Et Cosmochimica Acta. 163: 299-310. DOI: 10.1016/J.Gca.2015.03.039 |
0.347 |
|
| 2014 |
Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE. Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. Microbiology (Reading, England). 160: 362-372. PMID 28206912 DOI: 10.1099/Mic.0.073965-0 |
0.378 |
|
| 2014 |
Shi L, Fredrickson JK, Zachara JM. Genomic analyses of bacterial porin-cytochrome gene clusters. Frontiers in Microbiology. 5: 657. PMID 25505896 DOI: 10.3389/Fmicb.2014.00657 |
0.32 |
|
| 2014 |
Wilkins MJ, Daly RA, Mouser PJ, Trexler R, Sharma S, Cole DR, Wrighton KC, Biddle JF, Denis EH, Fredrickson JK, Kieft TL, Onstott TC, Peterson L, Pfiffner SM, Phelps TJ, et al. Trends and future challenges in sampling the deep terrestrial biosphere. Frontiers in Microbiology. 5: 481. PMID 25309520 DOI: 10.3389/Fmicb.2014.00481 |
0.301 |
|
| 2014 |
Moran JJ, Doll CG, Bernstein HC, Renslow RS, Cory AB, Hutchison JR, Lindemann SR, Fredrickson JK. Spatially tracking (13) C-labelled substrate (bicarbonate) accumulation in microbial communities using laser ablation isotope ratio mass spectrometry. Environmental Microbiology Reports. 6: 786-91. PMID 25155264 DOI: 10.1111/1758-2229.12211 |
0.643 |
|
| 2014 |
Liu Y, Wang Z, Liu J, Levar C, Edwards MJ, Babauta JT, Kennedy DW, Shi Z, Beyenal H, Bond DR, Clarke TA, Butt JN, Richardson DJ, Rosso KM, Zachara JM, ... Fredrickson JK, et al. A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA. Environmental Microbiology Reports. 6: 776-85. PMID 25139405 DOI: 10.1111/1758-2229.12204 |
0.315 |
|
| 2014 |
Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A. Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing. The Isme Journal. 8: 2243-55. PMID 24781900 DOI: 10.1038/Ismej.2014.69 |
0.365 |
|
| 2014 |
Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Frontiers in Microbiology. 5: 109. PMID 24778628 DOI: 10.3389/Fmicb.2014.00109 |
0.684 |
|
| 2014 |
Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK. Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a. Genome Announcements. 2. PMID 24482507 DOI: 10.1128/Genomea.01060-13 |
0.623 |
|
| 2014 |
Babauta JT, Atci E, Ha PT, Lindemann SR, Ewing T, Call DR, Fredrickson JK, Beyenal H. Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat. Frontiers in Microbiology. 5: 11. PMID 24478768 DOI: 10.3389/Fmicb.2014.00011 |
0.688 |
|
| 2014 |
Lee J, Zachara JM, Fredrickson JK, Heald SM, McKinley JP, Plymale AE, Resch CT, Moore DA. Fe(II)- and sulfide-facilitated reduction of 99Tc(VII)O4− in microbially reduced hyporheic zone sediments Geochimica Et Cosmochimica Acta. 136: 247-264. DOI: 10.1016/J.Gca.2013.08.017 |
0.355 |
|
| 2013 |
Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK. The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling. Frontiers in Microbiology. 4: 323. PMID 24312082 DOI: 10.3389/Fmicb.2013.00323 |
0.681 |
|
| 2013 |
Renslow R, Babauta J, Kuprat A, Schenk J, Ivory C, Fredrickson J, Beyenal H. Modeling biofilms with dual extracellular electron transfer mechanisms. Physical Chemistry Chemical Physics : Pccp. 15: 19262-83. PMID 24113651 DOI: 10.1039/C3Cp53759E |
0.324 |
|
| 2013 |
Stegen JC, Lin X, Fredrickson JK, Chen X, Kennedy DW, Murray CJ, Rockhold ML, Konopka A. Quantifying community assembly processes and identifying features that impose them. The Isme Journal. 7: 2069-79. PMID 23739053 DOI: 10.1038/Ismej.2013.93 |
0.371 |
|
| 2013 |
White GF, Shi Z, Shi L, Wang Z, Dohnalkova AC, Marshall MJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals. Proceedings of the National Academy of Sciences of the United States of America. 110: 6346-51. PMID 23538304 DOI: 10.1073/Pnas.1220074110 |
0.352 |
|
| 2013 |
Zachara JM, Long PE, Bargar J, Davis JA, Fox P, Fredrickson JK, Freshley MD, Konopka AE, Liu C, McKinley JP, Rockhold ML, Williams KH, Yabusaki SB. Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone. Journal of Contaminant Hydrology. 147: 45-72. PMID 23500840 DOI: 10.1016/J.Jconhyd.2013.02.001 |
0.342 |
|
| 2013 |
Wang Y, Sevinc PC, Belchik SM, Fredrickson J, Shi L, Lu HP. Single-cell imaging and spectroscopic analyses of Cr(VI) reduction on the surface of bacterial cells. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 950-6. PMID 23249294 DOI: 10.1021/La303779Y |
0.304 |
|
| 2013 |
Renslow RS, Babauta JT, Dohnalkova AC, Boyanov MI, Kemner KM, Majors PD, Fredrickson JK, Beyenal H. Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms Energy and Environmental Science. 6: 1827-1836. DOI: 10.1039/C3Ee40203G |
0.337 |
|
| 2012 |
Shi L, Rosso KM, Zachara JM, Fredrickson JK. Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective. Biochemical Society Transactions. 40: 1261-7. PMID 23176465 DOI: 10.1042/Bst20120098 |
0.375 |
|
| 2012 |
Marritt SJ, McMillan DG, Shi L, Fredrickson JK, Zachara JM, Richardson DJ, Jeuken LJ, Butt JN. The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1. Biochemical Society Transactions. 40: 1217-21. PMID 23176457 DOI: 10.1042/Bst20120150 |
0.362 |
|
| 2012 |
Richardson DJ, Fredrickson JK, Zachara JM. Electron transport at the microbe-mineral interface: a synthesis of current research challenges. Biochemical Society Transactions. 40: 1163-6. PMID 23176448 DOI: 10.1042/Bst20120242 |
0.354 |
|
| 2012 |
Shi Z, Zachara JM, Shi L, Wang Z, Moore DA, Kennedy DW, Fredrickson JK. Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite. Environmental Science & Technology. 46: 11644-52. PMID 22985396 DOI: 10.1021/Es301544B |
0.311 |
|
| 2012 |
Ahmed B, Cao B, McLean JS, Ica T, Dohnalkova A, Istanbullu O, Paksoy A, Fredrickson JK, Beyenal H. Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments. Applied and Environmental Microbiology. 78: 8001-9. PMID 22961903 DOI: 10.1128/Aem.01844-12 |
0.315 |
|
| 2012 |
Cao B, Majors PD, Ahmed B, Renslow RS, Silvia CP, Shi L, Kjelleberg S, Fredrickson JK, Beyenal H. Biofilm shows spatially stratified metabolic responses to contaminant exposure. Environmental Microbiology. 14: 2901-10. PMID 22925136 DOI: 10.1111/J.1462-2920.2012.02850.X |
0.327 |
|
| 2012 |
Pearce CI, Wilkins MJ, Zhang C, Heald SM, Fredrickson JK, Zachara JM. Pore-scale characterization of biogeochemical controls on iron and uranium speciation under flow conditions. Environmental Science & Technology. 46: 7992-8000. PMID 22731932 DOI: 10.1021/Es301050H |
0.328 |
|
| 2012 |
Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates. Structure (London, England : 1993). 20: 1275-84. PMID 22682743 DOI: 10.1016/J.Str.2012.04.016 |
0.311 |
|
| 2012 |
Vu TT, Stolyar SM, Pinchuk GE, Hill EA, Kucek LA, Brown RN, Lipton MS, Osterman A, Fredrickson JK, Konopka AE, Beliaev AS, Reed JL. Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142. Plos Computational Biology. 8: e1002460. PMID 22529767 DOI: 10.1371/Journal.Pcbi.1002460 |
0.343 |
|
| 2012 |
Marritt SJ, Lowe TG, Bye J, McMillan DG, Shi L, Fredrickson J, Zachara J, Richardson DJ, Cheesman MR, Jeuken LJ, Butt JN. A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility in Shewanella. The Biochemical Journal. 444: 465-74. PMID 22458729 DOI: 10.1042/Bj20120197 |
0.312 |
|
| 2012 |
Stegen JC, Lin X, Konopka AE, Fredrickson JK. Stochastic and deterministic assembly processes in subsurface microbial communities. The Isme Journal. 6: 1653-64. PMID 22456445 DOI: 10.1038/Ismej.2012.22 |
0.357 |
|
| 2012 |
Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A. Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer. The Isme Journal. 6: 1665-76. PMID 22456444 DOI: 10.1038/Ismej.2012.26 |
0.371 |
|
| 2012 |
Lee JH, Fredrickson JK, Kukkadapu RK, Boyanov MI, Kemner KM, Lin X, Kennedy DW, Bjornstad BN, Konopka AE, Moore DA, Resch CT, Phillips JL. Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments. Environmental Science & Technology. 46: 3721-30. PMID 22414073 DOI: 10.1021/Es204528M |
0.356 |
|
| 2012 |
Shi L, Rosso KM, Clarke TA, Richardson DJ, Zachara JM, Fredrickson JK. Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1. Frontiers in Microbiology. 3: 50. PMID 22363328 DOI: 10.3389/Fmicb.2012.00050 |
0.359 |
|
| 2012 |
Liu J, Wang Z, Belchik SM, Edwards MJ, Liu C, Kennedy DW, Merkley ED, Lipton MS, Butt JN, Richardson DJ, Zachara JM, Fredrickson JK, Rosso KM, Shi L. Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1. Frontiers in Microbiology. 3: 37. PMID 22347878 DOI: 10.3389/Fmicb.2012.00037 |
0.311 |
|
| 2012 |
Plymale AE, Bailey VL, Fredrickson JK, Heald SM, Buck EC, Shi L, Wang Z, Resch CT, Moore DA, Bolton H. Biotic and abiotic reduction and solubilization of Pu(IV)O₂•xH₂O(am) as affected by anthraquinone-2,6-disulfonate (AQDS) and ethylenediaminetetraacetate (EDTA). Environmental Science & Technology. 46: 2132-40. PMID 22276620 DOI: 10.1021/Es2030752 |
0.308 |
|
| 2012 |
Lin X, Kennedy D, Peacock A, McKinley J, Resch CT, Fredrickson J, Konopka A. Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment. Applied and Environmental Microbiology. 78: 759-67. PMID 22138990 DOI: 10.1128/Aem.07404-11 |
0.321 |
|
| 2012 |
Lin X, Kennedy D, Fredrickson J, Bjornstad B, Konopka A. Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site. Environmental Microbiology. 14: 414-25. PMID 22122741 DOI: 10.1111/J.1462-2920.2011.02659.X |
0.404 |
|
| 2012 |
Nguyen HD, Cao B, Mishra B, Boyanov MI, Kemner KM, Fredrickson JK, Beyenal H. Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium. Water Research. 46: 227-34. PMID 22078229 DOI: 10.1016/J.Watres.2011.10.054 |
0.34 |
|
| 2012 |
Lindemann S, Moran J, Dohnalkova A, Kim Y, Kennedy D, Stolyar S, Majors P, Wiley H, Konopka A, Fredrickson J. Microbial Diversity and Biogeochemical Function of the Phototrophic Microbial Mats of Epsomitic Hot Lake, WA Microscopy and Microanalysis. 18: 10-11. DOI: 10.1017/S1431927612001900 |
0.658 |
|
| 2011 |
Xiong Y, Chen B, Shi L, Fredrickson JK, Bigelow DJ, Squier TC. Targeted protein degradation of outer membrane decaheme cytochrome MtrC metal reductase in Shewanella oneidensis MR-1 measured using biarsenical probe CrAsH-EDT(2). Biochemistry. 50: 9738-51. PMID 21999518 DOI: 10.1021/Bi200602F |
0.325 |
|
| 2011 |
Pinchuk GE, Geydebrekht OV, Hill EA, Reed JL, Konopka AE, Beliaev AS, Fredrickson JK. Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions. Applied and Environmental Microbiology. 77: 8234-40. PMID 21965410 DOI: 10.1128/Aem.05382-11 |
0.348 |
|
| 2011 |
Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA. Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis. The Journal of Biological Chemistry. 286: 35782-94. PMID 21849503 DOI: 10.1074/Jbc.M111.267963 |
0.309 |
|
| 2011 |
Shi L, Belchik SM, Wang Z, Kennedy DW, Dohnalkova AC, Marshall MJ, Zachara JM, Fredrickson JK. Identification and characterization of UndAHRCR-6, an outer membrane endecaheme c-type cytochrome of Shewanella sp. strain HRCR-6. Applied and Environmental Microbiology. 77: 5521-3. PMID 21652739 DOI: 10.1128/Aem.00614-11 |
0.318 |
|
| 2011 |
Cao B, Ahmed B, Kennedy DW, Wang Z, Shi L, Marshall MJ, Fredrickson JK, Isern NG, Majors PD, Beyenal H. Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization. Environmental Science & Technology. 45: 5483-90. PMID 21627155 DOI: 10.1021/Es200095J |
0.319 |
|
| 2011 |
Cao B, Shi L, Brown RN, Xiong Y, Fredrickson JK, Romine MF, Marshall MJ, Lipton MS, Beyenal H. Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics. Environmental Microbiology. 13: 1018-31. PMID 21251176 DOI: 10.1111/J.1462-2920.2010.02407.X |
0.321 |
|
| 2011 |
Plymale AE, Fredrickson JK, Zachara JM, Dohnalkova AC, Heald SM, Moore DA, Kennedy DW, Marshall MJ, Wang C, Resch CT, Nachimuthu P. Competitive reduction of pertechnetate (99TcO4-) by dissimilatory metal reducing bacteria and biogenic Fe(II). Environmental Science & Technology. 45: 951-7. PMID 21210705 DOI: 10.1021/Es1027647 |
0.316 |
|
| 2010 |
Turse JE, Marshall MJ, Fredrickson JK, Lipton MS, Callister SJ. An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences. Plos One. 5: e13968. PMID 21103051 DOI: 10.1371/Journal.Pone.0013968 |
0.34 |
|
| 2010 |
Pinchuk GE, Hill EA, Geydebrekht OV, De Ingeniis J, Zhang X, Osterman A, Scott JH, Reed SB, Romine MF, Konopka AE, Beliaev AS, Fredrickson JK, Reed JL. Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation. Plos Computational Biology. 6: e1000822. PMID 20589080 DOI: 10.1371/Journal.Pcbi.1000822 |
0.359 |
|
| 2010 |
Reardon CL, Dohnalkova AC, Nachimuthu P, Kennedy DW, Saffarini DA, Arey BW, Shi L, Wang Z, Moore D, McLean JS, Moyles D, Marshall MJ, Zachara JM, Fredrickson JK, Beliaev AS. Role of outer-membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1. Geobiology. 8: 56-68. PMID 20002197 DOI: 10.1111/J.1472-4669.2009.00226.X |
0.34 |
|
| 2010 |
Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC. Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes. Functional & Integrative Genomics. 10: 97-110. PMID 19802638 DOI: 10.1007/S10142-009-0142-Y |
0.311 |
|
| 2010 |
Peretyazhko T, Zachara JM, Kennedy DW, Fredrickson JK, Arey BW, McKinley JP, Wang CM, Dohnalkova A, Xia Y. Ferrous phosphate surface precipitates resulting from the reduction of intragrain 6-line ferrihydrite by Shewanella oneidensis MR-1 Geochimica Et Cosmochimica Acta. 74: 3751-3767. DOI: 10.1016/J.Gca.2010.04.008 |
0.327 |
|
| 2010 |
Bouhenni RA, Vora GJ, Biffinger JC, Shirodkar S, Brockman K, Ray R, Wu P, Johnson BJ, Biddle EM, Marshall MJ, Fitzgerald LA, Little BJ, Fredrickson JK, Beliaev AS, Ringeisen BR, et al. The role of Shewanella oneidensis MR-1 outer surface structures in extracellular electron transfer Electroanalysis. 22: 856-864. DOI: 10.1002/Elan.200880006 |
0.318 |
|
| 2009 |
Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106 |
0.335 |
|
| 2009 |
Liu C, Zachara JM, Zhong L, Heald SM, Wang Z, Jeon BH, Fredrickson JK. Microbial reduction of intragrain U(VI) in contaminated sediment. Environmental Science & Technology. 43: 4928-33. PMID 19673287 DOI: 10.1021/Es8029208 |
0.352 |
|
| 2009 |
Charania MA, Brockman KL, Zhang Y, Banerjee A, Pinchuk GE, Fredrickson JK, Beliaev AS, Saffarini DA. Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1. Journal of Bacteriology. 191: 4298-306. PMID 19395492 DOI: 10.1128/Jb.01829-08 |
0.331 |
|
| 2009 |
Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. The Isme Journal. 3: 966-76. PMID 19387485 DOI: 10.1038/Ismej.2009.40 |
0.325 |
|
| 2009 |
Pinchuk GE, Rodionov DA, Yang C, Li X, Osterman AL, Dervyn E, Geydebrekht OV, Reed SB, Romine MF, Collart FR, Scott JH, Fredrickson JK, Beliaev AS. Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Proceedings of the National Academy of Sciences of the United States of America. 106: 2874-9. PMID 19196979 DOI: 10.1073/Pnas.0806798106 |
0.342 |
|
| 2009 |
Marshall MJ, Dohnalkova AC, Kennedy DW, Plymale AE, Thomas SH, Löffler FE, Sanford RA, Zachara JM, Fredrickson JK, Beliaev AS. Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C. Environmental Microbiology. 11: 534-43. PMID 19196283 DOI: 10.1111/J.1462-2920.2008.01795.X |
0.329 |
|
| 2009 |
Fredrickson JK, Zachara JM, Plymale AE, Heald SM, McKinley JP, Kennedy DW, Liu C, Nachimuthu P. Oxidative Dissolution Potential of Biogenic and Abiogenic TcO2 in Subsurface Sediments Geochimica Et Cosmochimica Acta. 73: 2299-2313. DOI: 10.1016/J.Gca.2009.01.027 |
0.347 |
|
| 2009 |
Jaisi DP, Dong H, Plymale AE, Fredrickson JK, Zachara JM, Heald S, Liu C. Reduction and long-term immobilization of technetium by Fe(II) associated with clay mineral nontronite Chemical Geology. 264: 127-138. DOI: 10.1016/J.Chemgeo.2009.02.018 |
0.33 |
|
| 2008 |
Clarke TA, Holley T, Hartshorne RS, Fredrickson JK, Zachara JM, Shi L, Richardson DJ. The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis Biochemical Society Transactions. 36: 1005-1010. PMID 18793179 DOI: 10.1042/Bst0361005 |
0.345 |
|
| 2008 |
Wang Z, Liu C, Wang X, Marshall MJ, Zachara JM, Rosso KM, Dupuis M, Fredrickson JK, Heald S, Shi L. Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 74: 6746-55. PMID 18791025 DOI: 10.1128/Aem.01454-08 |
0.317 |
|
| 2008 |
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947 |
0.382 |
|
| 2008 |
Fredrickson JK, Zachara JM. Electron transfer at the microbe-mineral interface: a grand challenge in biogeochemistry. Geobiology. 6: 245-253. PMID 18498527 DOI: 10.1111/J.1472-4669.2008.00146.X |
0.366 |
|
| 2008 |
McLean JS, Majors PD, Reardon CL, Bilskis CL, Reed SB, Romine MF, Fredrickson JK. Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms. Journal of Microbiological Methods. 74: 47-56. PMID 18448180 DOI: 10.1016/J.Mimet.2008.02.015 |
0.37 |
|
| 2008 |
McLean JS, Pinchuk GE, Geydebrekht OV, Bilskis CL, Zakrajsek BA, Hill EA, Saffarini DA, Romine MF, Gorby YA, Fredrickson JK, Beliaev AS. Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1. Environmental Microbiology. 10: 1861-76. PMID 18412550 DOI: 10.1111/J.1462-2920.2008.01608.X |
0.318 |
|
| 2008 |
Fredrickson JK, Li SM, Gaidamakova EK, Matrosova VY, Zhai M, Sulloway HM, Scholten JC, Brown MG, Balkwill DL, Daly MJ. Protein oxidation: key to bacterial desiccation resistance? The Isme Journal. 2: 393-403. PMID 18273068 DOI: 10.1038/Ismej.2007.116 |
0.316 |
|
| 2008 |
Pinchuk GE, Ammons C, Culley DE, Li SM, McLean JS, Romine MF, Nealson KH, Fredrickson JK, Beliaev AS. Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction. Applied and Environmental Microbiology. 74: 1198-208. PMID 18156329 DOI: 10.1128/Aem.02026-07 |
0.305 |
|
| 2008 |
Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA. The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression. Archives of Microbiology. 189: 313-24. PMID 18030449 DOI: 10.1007/S00203-007-0321-Y |
0.323 |
|
| 2008 |
Marshall MJ, Plymale AE, Kennedy DW, Shi L, Wang Z, Reed SB, Dohnalkova AC, Simonson CJ, Liu C, Saffarini DA, Romine MF, Zachara JM, Beliaev AS, Fredrickson JK. Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1. Environmental Microbiology. 10: 125-36. PMID 17888007 DOI: 10.1111/J.1462-2920.2007.01438.X |
0.318 |
|
| 2008 |
Bretschger O, Obraztsova A, Sturm CA, In SC, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, ... ... Fredrickson JK, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants (Applied and Environmental Microbiology (2007) 73, 21, (7003-7012)) Applied and Environmental Microbiology. 74: 553. DOI: 10.1128/Aem.02560-07 |
0.343 |
|
| 2007 |
Driscoll ME, Romine MF, Juhn FS, Serres MH, McCue LA, Beliaev AS, Fredrickson JK, Gardner TS. Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling. Genome Informatics. International Conference On Genome Informatics. 18: 287-98. PMID 18546496 DOI: 10.11234/Gi1990.18.287 |
0.32 |
|
| 2007 |
Hartshorne RS, Jepson BN, Clarke TA, Field SJ, Fredrickson J, Zachara J, Shi L, Butt JN, Richardson DJ. Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 12: 1083-94. PMID 17701062 DOI: 10.1007/S00775-007-0278-Y |
0.339 |
|
| 2007 |
Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, ... ... Fredrickson JK, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Applied and Environmental Microbiology. 73: 7003-12. PMID 17644630 DOI: 10.1128/Aem.01087-07 |
0.339 |
|
| 2007 |
Shi L, Squier TC, Zachara JM, Fredrickson JK. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Molecular Microbiology. 65: 12-20. PMID 17581116 DOI: 10.1111/J.1365-2958.2007.05783.X |
0.316 |
|
| 2007 |
Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li SM, Kemner KM, Fredrickson JK. Protein oxidation implicated as the primary determinant of bacterial radioresistance. Plos Biology. 5: e92. PMID 17373858 DOI: 10.1371/Journal.Pbio.0050092 |
0.3 |
|
| 2007 |
Deflaun MF, Fredrickson JK, Dong H, Pfiffner SM, Onstott TC, Balkwill DL, Streger SH, Stackebrandt E, Knoessen S, van Heerden E. Isolation and characterization of a Geobacillus thermoleovorans strain from an ultra-deep South African gold mine. Systematic and Applied Microbiology. 30: 152-64. PMID 16709445 DOI: 10.1016/J.Syapm.2006.04.003 |
0.317 |
|
| 2006 |
Liu C, Jeon BH, Zachara JM, Wang Z, Dohnalkova A, Fredrickson JK. Kinetics of microbial reduction of Solid phase U(VI). Environmental Science & Technology. 40: 6290-6. PMID 17120555 DOI: 10.1021/Es0608601 |
0.322 |
|
| 2006 |
Xiong Y, Shi L, Chen B, Mayer MU, Lower BH, Londer Y, Bose S, Hochella MF, Fredrickson JK, Squier TC. High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome OmcA. Journal of the American Chemical Society. 128: 13978-9. PMID 17061851 DOI: 10.1021/Ja063526D |
0.31 |
|
| 2006 |
Gao H, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou J. Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. International Journal of Systematic and Evolutionary Microbiology. 56: 1911-6. PMID 16902030 DOI: 10.1099/Ijs.0.64354-0 |
0.3 |
|
| 2006 |
Marshall MJ, Beliaev AS, Dohnalkova AC, Kennedy DW, Shi L, Wang Z, Boyanov MI, Lai B, Kemner KM, McLean JS, Reed SB, Culley DE, Bailey VL, Simonson CJ, Saffarini DA, ... ... Fredrickson JK, et al. c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. Plos Biology. 4: e268. PMID 16875436 DOI: 10.1371/Journal.Pbio.0040268 |
0.337 |
|
| 2006 |
Brim H, Osborne JP, Kostandarithes HM, Fredrickson JK, Wackett LP, Daly MJ. Deinococcus radiodurans engineered for complete toluene degradation facilitates Cr(VI) reduction. Microbiology (Reading, England). 152: 2469-77. PMID 16849809 DOI: 10.1099/Mic.0.29009-0 |
0.345 |
|
| 2006 |
Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, Chang IS, Kim BH, Kim KS, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, ... ... Fredrickson JK, et al. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 11358-63. PMID 16849424 DOI: 10.1073/Pnas.0604517103 |
0.354 |
|
| 2006 |
Shi L, Chen B, Wang Z, Elias DA, Mayer MU, Gorby YA, Ni S, Lower BH, Kennedy DW, Wunschel DS, Mottaz HM, Marshall MJ, Hill EA, Beliaev AS, Zachara JM, ... Fredrickson JK, et al. Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. Journal of Bacteriology. 188: 4705-14. PMID 16788180 DOI: 10.1128/Jb.01966-05 |
0.339 |
|
| 2006 |
Roh Y, Gao H, Vali H, Kennedy DW, Yang ZK, Gao W, Dohnalkova AC, Stapleton RD, Moon JW, Phelps TJ, Fredrickson JK, Zhou J. Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4. Applied and Environmental Microbiology. 72: 3236-44. PMID 16672462 DOI: 10.1128/Aem.72.5.3236-3244.2006 |
0.346 |
|
| 2006 |
Kovacik WP, Takai K, Mormile MR, McKinley JP, Brockman FJ, Fredrickson JK, Holben WE. Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S(zero)-reducing bacteria in a sulfate-rich environment. Environmental Microbiology. 8: 141-55. PMID 16343329 DOI: 10.1111/J.1462-2920.2005.00876.X |
0.433 |
|
| 2006 |
Fredrickson JK, Balkwill DL. Geomicrobial Processes and Biodiversity in the Deep Terrestrial Subsurface Geomicrobiology Journal. 23: 345-356. DOI: 10.1080/01490450600875571 |
0.386 |
|
| 2006 |
Kukkadapu RK, Zachara JM, Fredrickson JK, McKinley JP, Kennedy DW, Smith SC, Dong H. Reductive biotransformation of Fe in shale–limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates Geochimica Et Cosmochimica Acta. 70: 3662-3676. DOI: 10.1016/J.Gca.2006.05.004 |
0.32 |
|
| 2005 |
Moser DP, Gihring TM, Brockman FJ, Fredrickson JK, Balkwill DL, Dollhopf ME, Lollar BS, Pratt LM, Boice E, Southam G, Wanger G, Baker BJ, Pfiffner SM, Lin LH, Onstott TC. Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault. Applied and Environmental Microbiology. 71: 8773-83. PMID 16332873 DOI: 10.1128/Aem.71.12.8773-8783.2005 |
0.405 |
|
| 2005 |
Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J. Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. Journal of Bacteriology. 187: 7138-45. PMID 16199584 DOI: 10.1128/Jb.187.20.7138-7145.2005 |
0.304 |
|
| 2005 |
Fredrickson JK, Romine MF. Genome-assisted analysis of dissimilatory metal-reducing bacteria. Current Opinion in Biotechnology. 16: 269-74. PMID 15961027 DOI: 10.1016/J.Copbio.2005.04.001 |
0.318 |
|
| 2005 |
Majors PD, McLean JS, Pinchuk GE, Fredrickson JK, Gorby YA, Minard KR, Wind RA. NMR methods for in situ biofilm metabolism studies. Journal of Microbiological Methods. 62: 337-44. PMID 15936835 DOI: 10.1016/J.Mimet.2005.04.017 |
0.316 |
|
| 2005 |
Fredrickson JK. Between a Rock and a Hard Place: Geomicrobial Electron Transfer Environmental Microbiology. 7: 475-476. PMID 15816916 DOI: 10.1111/J.1462-2920.2005.803_4.X |
0.368 |
|
| 2005 |
Ghosal D, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Venkateswaran A, Zhai M, Kostandarithes HM, Brim H, Makarova KS, Wackett LP, Fredrickson JK, Daly MJ. How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress. Fems Microbiology Reviews. 29: 361-75. PMID 15808748 DOI: 10.1016/J.Femsre.2004.12.007 |
0.3 |
|
| 2005 |
Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Fredrickson JK, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102 |
0.308 |
|
| 2005 |
DiChristina TJ, Fredrickson JK, Zachara JM. Enzymology of electron transport: Energy generation with geochemical consequences Reviews in Mineralogy and Geochemistry. 59: 27-52. DOI: 10.2138/Rmg.2005.59.3 |
0.37 |
|
| 2005 |
Kukkadapu RK, Zachara JM, Fredrickson JK, Kennedy DW, Dohnalkova AC, McCready DE. Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite American Mineralogist. 90: 510-515. DOI: 10.2138/Am.2005.1727 |
0.338 |
|
| 2004 |
Fredrickson JK, Zachara JM, Balkwill DL, Kennedy D, Li SM, Kostandarithes HM, Daly MJ, Romine MF, Brockman FJ. Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state. Applied and Environmental Microbiology. 70: 4230-41. PMID 15240306 DOI: 10.1128/Aem.70.7.4230-4241.2004 |
0.333 |
|
| 2004 |
Balkwill DL, Kieft TL, Tsukuda T, Kostandarithes HM, Onstott TC, Macnaughton S, Bownas J, Fredrickson JK. Identification of iron-reducing Thermus strains as Thermus scotoductus. Extremophiles : Life Under Extreme Conditions. 8: 37-44. PMID 15064988 DOI: 10.1007/S00792-003-0357-0 |
0.314 |
|
| 2004 |
Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach AL, Kieft TL, Colwell FS. Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in Situ Geomicrobiology Journal. 21: 169-182. DOI: 10.1080/01490450490275848 |
0.334 |
|
| 2004 |
Fredrickson JK, Zachara JM, Kennedy DW, Kukkadapu RK, McKinley JP, Heald SM, Liu C, Plymale AE. Reduction of TcO4- by sediment-associated biogenic Fe(II) Geochimica Et Cosmochimica Acta. 68: 3171-3187. DOI: 10.1016/J.Gca.2003.10.024 |
0.324 |
|
| 2004 |
Zachara JM, Kukkadapu RK, Gassman PL, Dohnalkova A, Fredrickson JK, Anderson T. Biogeochemical transformation of Fe minerals in a petroleum-contaminated aquifer Geochimica Et Cosmochimica Acta. 68: 1791-1805. DOI: 10.1016/J.Gca.2003.09.022 |
0.335 |
|
| 2003 |
Moser DP, Fredrickson JK, Geist DR, Arntzen EV, Peacock AD, Li SMW, Spadoni T, McKinley JP. Biogeochemical Processes and Microbial Characteristics across Groundwater-Surface Water Boundaries of the Hanford Reach of the Columbia River Environmental Science and Technology. 37: 5127-5134. PMID 14655698 DOI: 10.1021/Es034457V |
0.368 |
|
| 2003 |
Onstott TC, Moser DP, Pfiffner SM, Fredrickson JK, Brockman FJ, Phelps TJ, White DC, Peacock A, Balkwill D, Hoover R, Krumholz LR, Borscik M, Kieft TL, Wilson R. Indigenous and contaminant microbes in ultradeep mines. Environmental Microbiology. 5: 1168-91. PMID 14641596 DOI: 10.1046/J.1462-2920.2003.00512.X |
0.331 |
|
| 2003 |
Fredrickson JK, Kota S, Kukkadapu RK, Liu C, Zachara JM. Influence of electron donor/acceptor concentrations on hydrous ferric oxide (HFO) bioreduction. Biodegradation. 14: 91-103. PMID 12877465 DOI: 10.1023/A:1024001207574 |
0.36 |
|
| 2003 |
Brooks SC, Fredrickson JK, Carroll SL, Kennedy DW, Zachara JM, Plymale AE, Kelly SD, Kemner KM, Fendorf S. Inhibition of bacterial U(VI) reduction by calcium. Environmental Science & Technology. 37: 1850-8. PMID 12775057 DOI: 10.1021/Es0210042 |
0.303 |
|
| 2003 |
Takai K, Mormile MR, McKinley JP, Brockman FJ, Holben WE, Kovacik WP, Fredrickson JK. Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock. Environmental Microbiology. 5: 309-20. PMID 12662178 DOI: 10.1046/J.1462-2920.2003.00421.X |
0.382 |
|
| 2003 |
Baker BJ, Moser DP, MacGregor BJ, Fishbain S, Wagner M, Fry NK, Jackson B, Speolstra N, Loos S, Takai K, Lollar BS, Fredrickson J, Balkwill D, Onstott TC, Wimpee CF, et al. Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State. Environmental Microbiology. 5: 267-77. PMID 12662174 DOI: 10.1046/J.1462-2920.2003.00408.X |
0.334 |
|
| 2003 |
Moser DP, Onstott TC, Fredrickson JK, Brockman FJ, Balkwill DL, Drake GR, Pfiffner SM, White DC, Takai K, Pratt LM, Fong J, Sherwood Lollar B, Slater G, Phelps TJ, Spoelstra N, et al. Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation Geomicrobiology Journal. 20: 517-548. DOI: 10.1080/713851170 |
0.415 |
|
| 2003 |
Dong H, Kukkadapu RK, Fredrickson JK, Zachara JM, Kennedy DW, Kostandarithes HM. Microbial Reduction of Structural Fe(III) in Illite and Goethite Environmental Science & Technology. 37: 1268-1276. DOI: 10.1021/Es020919D |
0.326 |
|
| 2003 |
Rosso KM, Zachara JM, Fredrickson JK, Gorby YA, Smith SC. Nonlocal bacterial electron transfer to hematite surfaces Geochimica Et Cosmochimica Acta. 67: 1081-1087. DOI: 10.1016/S0016-7037(02)00904-3 |
0.331 |
|
| 2002 |
Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF. Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnology and Bioengineering. 80: 637-49. PMID 12378605 DOI: 10.1002/Bit.10430 |
0.343 |
|
| 2002 |
Zachara JM, Kukkadapu RK, Fredrickson JK, Gorby YA, Smith SC. Biomineralization of Poorly Crystalline Fe(III) Oxides by Dissimilatory Metal Reducing Bacteria (DMRB) Geomicrobiology Journal. 19: 179-207. DOI: 10.1080/01490450252864271 |
0.351 |
|
| 2002 |
Rai D, Gorby YA, Fredrickson JK, Moore DA, Yui M. Reductive Dissolution of PuO2(am): The Effect of Fe(II) and Hydroquinone Journal of Solution Chemistry. 31: 433-453. DOI: 10.1023/A:1020200911842 |
0.318 |
|
| 2002 |
Fredrickson JK, Zachara JM, Kennedy DW, Liu C, Duff MC, Hunter DB, Dohnalkova A. Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens Geochimica Et Cosmochimica Acta. 66: 3247-3262. DOI: 10.1016/S0016-7037(02)00928-6 |
0.313 |
|
| 2001 |
Takai K, Moser DP, DeFlaun M, Onstott TC, Fredrickson JK. Archaeal diversity in waters from deep South African gold mines. Applied and Environmental Microbiology. 67: 5750-60. PMID 11722932 DOI: 10.1128/Aem.67.21.5750-5760.2001 |
0.334 |
|
| 2001 |
Shi T, Fredrickson JK, Balkwill DL. Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface Journal of Industrial Microbiology & Biotechnology. 26: 283-289. PMID 11494104 DOI: 10.1038/Sj.Jim.7000130 |
0.312 |
|
| 2001 |
Takai K, Moser DP, Onstott TC, Spoelstra N, Pfiffner SM, Dohnalkova A, Fredrickson JK. Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine. International Journal of Systematic and Evolutionary Microbiology. 51: 1245-56. PMID 11491320 DOI: 10.1099/00207713-51-4-1245 |
0.343 |
|
| 2001 |
Liu C, Kota S, Zachara JM, Fredrickson JK, Brinkman CK. Kinetic analysis of the bacterial reduction of goethite. Environmental Science & Technology. 35: 2482-2490. PMID 11432552 DOI: 10.1021/Es001956C |
0.33 |
|
| 2001 |
Fredrickson JK, Zachara JM, Kukkadapu RK, Gorby YA, Smith SC, Brown CF. Biotransformation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium. Environmental Science & Technology. 35: 703-12. PMID 11349281 DOI: 10.1021/Es001500V |
0.327 |
|
| 2001 |
Balkwill D, Chen J, DeFlaun M, Dobbs F, Dong H, Fredrickson J, Fuller M, Green M, Ginn T, Griffin T, Holben W, Hubbard S, Johnson W, Long P, Mailloux B, et al. Breakthroughs in field-scale bacterial transport Eos, Transactions American Geophysical Union. 82: 417-417. DOI: 10.1029/01Eo00255 |
0.309 |
|
| 2001 |
Kukkadapu RK, Zachara JM, Smith SC, Fredrickson JK, Liu C. Dissimilatory bacterial reduction of Al-substituted goethite in subsurface sediments Geochimica Et Cosmochimica Acta. 65: 2913-2924. DOI: 10.1016/S0016-7037(01)00656-1 |
0.311 |
|
| 2001 |
Zachara JM, Fredrickson JK, Smith SC, Gassman PL. Solubilization of Fe(III) oxide-bound trace metals by a dissimilatory Fe(III) reducing bacterium Geochimica Et Cosmochimica Acta. 65: 75-93. DOI: 10.1016/S0016-7037(00)00500-7 |
0.34 |
|
| 2000 |
Fuller ME, Streger SH, Rothmel RK, Mailloux BJ, Hall JA, Onstott TC, Fredrickson JK, Balkwill DL, DeFlaun MF. Development of a vital fluorescent staining method for monitoring bacterial transport in subsurface environments. Applied and Environmental Microbiology. 66: 4486-96. PMID 11010903 DOI: 10.1128/Aem.66.10.4486-4496.2000 |
0.31 |
|
| 2000 |
Fredrickson JK. Microbial ecology update. Microbial Ecology. 40: 1-1. PMID 10977870 DOI: 10.1007/S002480000052 |
0.371 |
|
| 2000 |
Crocker FH, Fredrickson JK, White DC, Ringelberg DB, Balkwill DL. Phylogenetic and physiological diversity of Arthrobacter strains isolated from unconsolidated subsurface sediments Microbiology. 146: 1295-1310. PMID 10846209 DOI: 10.1099/00221287-146-6-1295 |
0.31 |
|
| 2000 |
Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK. Effect of Electron Donor and Solution Chemistry on Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens Applied and Environmental Microbiology. 66: 2451-2460. PMID 10831424 DOI: 10.1128/Aem.66.6.2451-2460.2000 |
0.371 |
|
| 2000 |
Fredrickson JK, Kostandarithes HM, Li SW, Plymale AE, Daly MJ. Reduction of Fe(III), Cr(VI), U(VI), and Tc(VII) by Deinococcus radiodurans R1 Applied and Environmental Microbiology. 66: 2006-2011. PMID 10788374 DOI: 10.1128/Aem.66.5.2006-2011.2000 |
0.331 |
|
| 2000 |
Zachara JM, Smith SC, Fredrickson JK. The effect of biogenic Fe(II) on the stability and sorption of Co(II)EDTA2− to goethite and a subsurface sediment Geochimica Et Cosmochimica Acta. 64: 1345-1362. DOI: 10.1016/S0016-7037(99)00427-5 |
0.322 |
|
| 2000 |
Fredrickson JK, Zachara JM, Kennedy DW, Duff MC, Gorby YA, Li SW, Krupka KM. Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium Geochimica Et Cosmochimica Acta. 64: 3085-3098. DOI: 10.1016/S0016-7037(00)00397-5 |
0.377 |
|
| 2000 |
Dong H, Fredrickson JK, Kennedy DW, Zachara JM, Kukkadapu RK, Onstott TC. Mineral transformation associated with the microbial reduction of magnetite Chemical Geology. 169: 299-318. DOI: 10.1016/S0009-2541(00)00210-2 |
0.373 |
|
| 1999 |
Romine MF, Fredrickson JK, Li S-W. Induction of aromatic catabolic activity in Sphingomonas aromaticivorans strain F199. Journal of Industrial Microbiology & Biotechnology. 23: 303-313. PMID 11423947 DOI: 10.1038/Sj.Jim.2900750 |
0.301 |
|
| 1999 |
Fredrickson JK, Balkwill DL, Romine MF, Shi T. Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp. Journal of Industrial Microbiology & Biotechnology. 23: 273-283. PMID 11423944 DOI: 10.1038/Sj.Jim.2900741 |
0.356 |
|
| 1999 |
Tobin KJ, Onstott TC, DeFlaun MF, Colwell FS, Fredrickson J. In situ imaging of microorganisms in geologic material. Journal of Microbiological Methods. 37: 201-13. PMID 10480264 DOI: 10.1016/S0167-7012(99)00044-5 |
0.32 |
|
| 1999 |
Dong H, Onstott TC, DeFlaun MF, Fuller ME, Gillespie KM, Fredrickson JK. Development of radiographic and microscopic techniques for the characterization of bacterial transport in intact sediment cores from Oyster, Virginia. Journal of Microbiological Methods. 37: 139-54. PMID 10445313 DOI: 10.1016/S0167-7012(99)00056-1 |
0.363 |
|
| 1999 |
Kieft TL, Fredrickson JK, Onstott TC, Gorby YA, Kostandarithes HM, Bailey TJ, Kennedy DW, Li SW, Plymale AE, Spadoni CM, Gray MS. Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate. Applied and Environmental Microbiology. 65: 1214-21. PMID 10049886 DOI: 10.1128/Aem.65.3.1214-1221.1999 |
0.349 |
|
| 1999 |
Walvoord MA, Pegram P, Phillips FM, Person M, Kieft TL, Fredrickson JK, McKinley JP, Swenson JB. Groundwater flow and geochemistry in the southeastern San Juan Basin: Implications for microbial transport and activity Water Resources Research. 35: 1409-1424. DOI: 10.1029/1999Wr900017 |
0.322 |
|
| 1998 |
Brockman FJ, Li SW, Fredrickson JK, Ringelberg DB, Kieft TL, Spadoni CM, White DC, McKinley JP. Post-Sampling Changes in Microbial Community Composition and Activity in a Subsurface Paleosol Microbial Ecology. 36: 152-164. PMID 9688777 DOI: 10.1007/S002489900102 |
0.377 |
|
| 1998 |
Chandler DP, Brockman FJ, Bailey TJ, Fredrickson JK. Phylogenetic Diversity of Archaea and Bacteria in a Deep Subsurface Paleosol Microbial Ecology. 36: 37-50. PMID 9622563 DOI: 10.1007/S002489900091 |
0.343 |
|
| 1998 |
Zachara JM, Fredrickson JK, Li S, Kennedy DW, Smith SC, Gassman PL. Bacterial reduction of crystalline Fe3+ oxides in single phase suspensions and subsurface materials American Mineralogist. 83: 1426-1443. DOI: 10.2138/Am-1998-11-1232 |
0.311 |
|
| 1998 |
Urrutia MM, Roden EE, Fredrickson JK, Zachara JM. Microbial and surface chemistry controls on reduction of synthetic Fe(III) oxide minerals by the dissimilatory iron‐reducing bacteriumShewanella alga Geomicrobiology Journal. 15: 269-291. DOI: 10.1080/01490459809378083 |
0.321 |
|
| 1998 |
Fredrickson JK, Zachara JM, Kennedy DW, Dong H, Onstott TC, Hinman NW, Li SM. Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium Geochimica Et Cosmochimica Acta. 62: 3239-3257. DOI: 10.1016/S0016-7037(98)00243-9 |
0.359 |
|
| 1997 |
Fry NK, Fredrickson JK, Fishbain S, Wagner M, Stahl DA. Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers Applied and Environmental Microbiology. 63: 1498-1504. PMID 9097447 DOI: 10.1128/Aem.63.4.1498-1504.1997 |
0.372 |
|
| 1997 |
Fredrickson JK. A New Era for Microbial Ecology Microbial Ecology. 33: 1-1. PMID 9039759 DOI: 10.1007/S002489900001 |
0.307 |
|
| 1997 |
Balkwill DL, Drake GR, Reeves RH, Fredrickson JK, White DC, Ringelberg DB, Chandler DP, Romine MF, Kennedy DW, Spadoni CM. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. International Journal of Systematic Bacteriology. 47: 191-201. PMID 8995822 DOI: 10.1099/00207713-47-1-191 |
0.308 |
|
| 1997 |
Colwell FS, Onstott TC, Delwiche ME, Chandler D, Fredrickson JK, Yao QJ, McKinley JP, Boone DR, Griffiths R, Phelps TJ, Ringelberg D, White DC, LaFreniere L, Balkwill D, Lehman RM, et al. Microorganisms from deep, high temperature sandstones: Constraints on microbial colonization Fems Microbiology Reviews. 20: 425-435. DOI: 10.1111/J.1574-6976.1997.Tb00327.X |
0.381 |
|
| 1997 |
Chandler DP, Brockman FJ, Fredrickson JK. Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment Fems Microbiology Reviews. 20: 217-230. DOI: 10.1111/J.1574-6976.1997.Tb00310.X |
0.373 |
|
| 1997 |
Chandler DP, Li S, Spadoni CM, Drake GR, Balkwill DL, Fredrickson JK, Brockman FJ. A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment Fems Microbiology Ecology. 23: 131-144. DOI: 10.1111/J.1574-6941.1997.Tb00397.X |
0.338 |
|
| 1997 |
Fredrickson JK, McKinley JP, Bjornstad BN, Long PE, Ringelberg DB, White DC, Krumholz LR, Suflita JM, Colwell FS, Lehman RM, Phelps TJ, Onstott TC. Pore‐size constraints on the activity and survival of subsurface bacteria in a late cretaceous shale‐sandstone sequence, northwestern New Mexico Geomicrobiology Journal. 14: 183-202. DOI: 10.1080/01490459709378043 |
0.342 |
|
| 1997 |
McKinley JP, Stevens TO, Fredrickson JK, Zachara JM, Colwell FS, Wagnon KB, Smith SC, Rawson SA, Bjornstad BN. Biogeochemistry of anaerobic lacustrine and paleosol sediments within an aerobic unconfined aquifer Geomicrobiology Journal. 14: 23-39. DOI: 10.1080/01490459709378031 |
0.358 |
|
| 1996 |
Fredrickson JK, Gorby YA. Environmental processes mediated by iron-reducing bacteria Current Opinion in Biotechnology. 7: 287-294. PMID 8785432 DOI: 10.1016/S0958-1669(96)80032-2 |
0.318 |
|
| 1995 |
Kieft TL, Fredrickson JK, McKinley JP, Bjornstad BN, Rawson SA, Phelps TJ, Brockman FJ, Pfiffner SM. Microbiological Comparisons within and across Contiguous Lacustrine, Paleosol, and Fluvial Subsurface Sediments Applied and Environmental Microbiology. 61: 749-757. PMID 16534940 DOI: 10.1128/Aem.61.2.749-757.1995 |
0.341 |
|
| 1995 |
Fredrickson JK, Balkwill DL, Drake GR, Romine MF, Ringelberg DB, White DC. Aromatic-degrading Sphingomonas isolates from the deep subsurface. Applied and Environmental Microbiology. 61: 1917-22. PMID 7544095 DOI: 10.1128/Aem.61.5.1917-1922.1995 |
0.313 |
|
| 1995 |
FREDRICKSON JK, MCKINLEY JP, NIERZWICKI-BAUER SA, WHITE DC, RINGELBERG DB, RAWSON SA, LI S, BROCKMAN FJ, BJORNSTAD BN. Microbial community structure and biogeochemistry of Miocene subsurface sediments: implications for long-term microbial survival Molecular Ecology. 4: 619-626. DOI: 10.1111/J.1365-294X.1995.Tb00262.X |
0.421 |
|
| 1995 |
Fredrickson JK, Li SW, Brockman FJ, Haldeman DL, Amy PS, Balkwill DL. Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples Journal of Microbiological Methods. 21: 253-265. DOI: 10.1016/0167-7012(94)00053-A |
0.319 |
|
| 1993 |
Stevens TO, McKinley JP, Fredrickson JK. Bacteria associated with deep, alkaline, anaerobic groundwaters in Southeast Washington. Microbial Ecology. 25: 35-50. PMID 24189705 DOI: 10.1007/Bf00182128 |
0.371 |
|
| 1993 |
Kieft TL, Amy PS, Brockman FJ, Fredrickson JK, Bjornstad BN, Rosacker LL. Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites Microbial Ecology. 26: 59-78. DOI: 10.1007/Bf00166030 |
0.313 |
|
| 1992 |
Brockman FJ, Kieft TL, Fredrickson JK, Bjornstad BN, Li SW, Spangenburg W, Long PE. Microbiology of vadose zone paleosols in south-central Washington State. Microbial Ecology. 23: 279-301. PMID 24192936 DOI: 10.1007/Bf00164101 |
0.352 |
|
| 1992 |
Murphy EM, Schramke JA, Fredrickson JK, Bledsoe HW, Francis AJ, Sklarew DS, Linehan JC. The influence of microbial activity and sedimentary organic carbon on the isotope geochemistry of the Middendorf Aquifer Water Resources Research. 28: 723-740. DOI: 10.1029/91Wr02678 |
0.384 |
|
| 1991 |
Fredrickson JK, Balkwill DL, Zachara JM, Li SM, Brockman FJ, Simmons MA. Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the atlantic coastal plain. Applied and Environmental Microbiology. 57: 402-11. PMID 16348407 DOI: 10.1128/Aem.57.2.402-411.1991 |
0.363 |
|
| 1990 |
Fredrickson JK, Bolton H, Mcfadden KM, Li SW, Voris PV, Bentjen SA. Evaluation of intact soil‐core microcosms for determining potential impacts on nutrient dynamics by genetically engineered microorganisms Environmental Toxicology and Chemistry. 9: 551-558. DOI: 10.1002/Etc.5620090503 |
0.333 |
|
| 1989 |
Balkwill DL, Fredrickson JK, Thomas JM. Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal plain subsurface sediments. Applied and Environmental Microbiology. 55: 1058-1065. PMID 16347902 DOI: 10.1128/Aem.55.5.1058-1065.1989 |
0.346 |
|
| 1989 |
Brockman FJ, Denovan BA, Hicks RJ, Fredrickson JK. Isolation and characterization of quinoline-degrading bacteria from subsurface sediments. Applied and Environmental Microbiology. 55: 1029-1032. PMID 2729977 DOI: 10.1128/Aem.55.4.1029-1032.1989 |
0.362 |
|
| 1989 |
Hicks RJ, Fredrickson JK. Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments Geomicrobiology Journal. 7: 67-78. DOI: 10.1080/01490458909377850 |
0.356 |
|
| 1989 |
Fredrickson JK, Garland TR, Hicks RJ, Thomas JM, Li SW, McFadden KM. Lithotrophic and Heterotrophic Bacteria in Deep Subsurface Sediments and Their Relation to Sediment Properties Geomicrobiology Journal. 7: 53-66. DOI: 10.1080/01490458909377849 |
0.341 |
|
| 1988 |
Fredrickson JK, Hicks RJ, Li SW, Brockman FJ. Plasmid incidence in bacteria from deep subsurface sediments. Applied and Environmental Microbiology. 54: 2916-2923. PMID 16347789 DOI: 10.1128/Aem.54.12.2916-2923.1988 |
0.3 |
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