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Daniel S. Rokhsar

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
Area:
Computation & Theory
Website:
http://www.physics.berkeley.edu/research/faculty/Rokhsar.html
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"Daniel Rokhsar"
Mean distance: 14.9 (cluster 17)
 		SNBCP
Cross-listing: Neurotree - Evolution Tree

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Parents

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Philip Warren Anderson research assistant 1981-1982 Princeton
 (senior thesis)
Daniel L. Stein research assistant 1981-1982 Princeton
 (senior thesis)
N. David Mermin grad student 1982-1987 Cornell
James P. Sethna grad student 1982-1987 Cornell

Children

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David M. Deaven grad student 1989-1993 UC Berkeley
Paul Edward Lammert grad student 1989-1993 UC Berkeley
Kanwal Gurbax Singh grad student 1989-1993 UC Berkeley
Dane D Morgan grad student 1998 UC Berkeley
Daniel A. Butts grad student 2000 UC Berkeley
Elliot Greenfield grad student 2001 UC Berkeley
Michael D. Grabe grad student 2002 UC Berkeley
Jarrod A. Chapman grad student 2004 UC Berkeley
Nicholas H. Putnam grad student 2004 UC Berkeley
David A. Hendrix grad student 2007 UC Berkeley
Mansi Srivastava grad student 2009 UC Berkeley
Alistair N. Boettiger grad student 2011 UC Berkeley
Daria Gavriouchkina post-doc (Neurotree)
Benjamin K. Blackman post-doc 2010-2010 UC Berkeley (Evolution Tree)
Ferdinand Marletaz post-doc 2016-2019 UC Berkeley (Evolution Tree)

Collaborators

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Publications

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Lin CY, Marlétaz F, Pérez-Posada A, et al. (2024) Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution. Plos Biology. 22: e3002661
Marlétaz F, Timoshevskaya N, Timoshevskiy VA, et al. (2024) The hagfish genome and the evolution of vertebrates. Nature
Ahuja N, Hwaun E, Pungor JR, et al. (2023) Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity. Current Biology : Cb
Session AM, Rokhsar DS. (2023) Transposon signatures of allopolyploid genome evolution. Nature Communications. 14: 3180
Marlétaz F, Timoshevskaya N, Timoshevskiy V, et al. (2023) The hagfish genome and the evolution of vertebrates. Biorxiv : the Preprint Server For Biology
Marlétaz F, de la Calle-Mustienes E, Acemel RD, et al. (2023) The little skate genome and the evolutionary emergence of wing-like fins. Nature
Albertin CB, Medina-Ruiz S, Mitros T, et al. (2022) Genome and transcriptome mechanisms driving cephalopod evolution. Nature Communications. 13: 2427
Bredeson JV, Lyons JB, Oniyinde IO, et al. (2022) Chromosome evolution and the genetic basis of agronomically important traits in greater yam. Nature Communications. 13: 2001
Simakov O, Bredeson J, Berkoff K, et al. (2022) Deeply conserved synteny and the evolution of metazoan chromosomes. Science Advances. 8: eabi5884
Sanchez G, Fernández-Álvarez FÁ, Taite M, et al. (2021) Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida). Communications Biology. 4: 819
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