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Joshua G. Schraiber, Ph.D. - Publications

Affiliations: 
Biology Temple University, Philadelphia, PA, United States 
Area:
Population genetics, molecular evolution, continuous character evolution, functional genomics
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Schraiber JG, Edge MD, Pennell M. Unifying approaches from statistical genetics and phylogenetics for mapping phenotypes in structured populations. Plos Biology. 22: e3002847. PMID 39383205 DOI: 10.1371/journal.pbio.3002847  0.324
2024 Schraiber JG, Edge MD, Pennell M. Unifying approaches from statistical genetics and phylogenetics for mapping phenotypes in structured populations. Biorxiv : the Preprint Server For Biology. PMID 38496530 DOI: 10.1101/2024.02.10.579721  0.328
2024 Shen Y, Masoero L, Schraiber JG, Broderick T. Double trouble: Predicting new variant counts across two heterogeneous populations. Arxiv. PMID 38495567  0.307
2023 Link V, Schraiber JG, Fan C, Dinh B, Mancuso N, Chiang CWK, Edge MD. Tree-based QTL mapping with expected local genetic relatedness matrices. American Journal of Human Genetics. 110: 2077-2091. PMID 38065072 DOI: 10.1016/j.ajhg.2023.10.017  0.322
2023 Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F, Christmas MJ, Clawson H, Haeussler M, Janiak MC, Kuhlwilm M, ... ... Schraiber JG, et al. Identification of constrained sequence elements across 239 primate genomes. Nature. PMID 38030727 DOI: 10.1038/s41586-023-06798-8  0.417
2023 Kuderna LFK, Gao H, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J, Rousselle M, Silva FE, Agueda L, Blanc J, Gut M, de Vries D, ... ... Schraiber JG, et al. A global catalog of whole-genome diversity from 233 primate species. Science (New York, N.Y.). 380: 906-913. PMID 37262161 DOI: 10.1126/science.abn7829  0.382
2023 Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD, Fiziev PP, Kuderna LFK, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, et al. The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.). 380: eabn8153. PMID 37262156 DOI: 10.1126/science.abn8197  0.425
2023 Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich A, Fiziev P, Kuderna L, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, et al. The landscape of tolerated genetic variation in humans and primates. Biorxiv : the Preprint Server For Biology. PMID 37205491 DOI: 10.1101/2023.05.01.538953  0.428
2023 Link V, Schraiber JG, Fan C, Dinh B, Mancuso N, Chiang CWK, Edge MD. Tree-based QTL mapping with expected local genetic relatedness matrices. Biorxiv : the Preprint Server For Biology. PMID 37066144 DOI: 10.1101/2023.04.07.536093  0.331
2023 Jones BM, Rubin BER, Dudchenko O, Kingwell CJ, Traniello IM, Wang ZY, Kapheim KM, Wyman ES, Adastra PA, Liu W, Parsons LR, Jackson SR, Goodwin K, Davidson SM, McBride MJ, ... ... Schraiber J, et al. Convergent and complementary selection shaped gains and losses of eusociality in sweat bees. Nature Ecology & Evolution. PMID 36941345 DOI: 10.1038/s41559-023-02001-3  0.692
2022 Gopalakrishnan S, Ebenesersdóttir SS, Lundstrøm IKC, Turner-Walker G, Moore KHS, Luisi P, Margaryan A, Martin MD, Ellegaard MR, Magnússon ÓÞ, Sigurðsson Á, Snorradóttir S, Magnúsdóttir DN, Laffoon JE, van Dorp L, ... ... Schraiber JG, et al. The population genomic legacy of the second plague pandemic. Current Biology : Cb. PMID 36182700 DOI: 10.1016/j.cub.2022.09.023  0.622
2019 Villanea FA, Schraiber JG. Multiple episodes of interbreeding between Neanderthal and modern humans. Nature Ecology & Evolution. 3: 39-44. PMID 30478305 DOI: 10.1038/S41559-018-0735-8  0.715
2018 Lin D, Bi K, Conroy CJ, Lacey EA, Schraiber JG, Bowie RCK. Mito-nuclear discordance across a recent contact zone for California voles. Ecology and Evolution. 8: 6226-6241. PMID 29988439 DOI: 10.1002/Ece3.4129  0.462
2018 Mendes FK, Fuentes-González JA, Schraiber JG, Hahn MW. A multispecies coalescent model for quantitative traits. Elife. 7. PMID 29969096 DOI: 10.7554/Elife.36482  0.37
2018 Schroeder H, Sikora M, Gopalakrishnan S, Cassidy LM, Maisano Delser P, Sandoval Velasco M, Schraiber JG, Rasmussen S, Homburger JR, Ávila-Arcos MC, Allentoft ME, Moreno-Mayar JV, Renaud G, Gómez-Carballa A, Laffoon JE, et al. Origins and genetic legacies of the Caribbean Taino. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463742 DOI: 10.1073/Pnas.1716839115  0.637
2017 Schraiber JG. Assessing the Relationship of Ancient and Modern Populations. Genetics. PMID 29167200 DOI: 10.1534/Genetics.117.300448  0.421
2017 Landis MJ, Schraiber JG. Pulsed evolution shaped modern vertebrate body sizes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29114046 DOI: 10.1073/Pnas.1710920114  0.337
2016 Gittelman RM, Schraiber JG, Vernot B, Mikacenic C, Wurfel MM, Akey JM. Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments. Current Biology : Cb. PMID 27839976 DOI: 10.1016/J.Cub.2016.10.041  0.665
2016 Nuttle X, Giannuzzi G, Duyzend MH, Schraiber JG, Narvaiza I, Sudmant PH, Penn O, Chiatante G, Malig M, Huddleston J, Benner C, Camponeschi F, Ciofi-Baffoni S, Stessman HA, Marchetto MC, et al. Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility. Nature. PMID 27487209 DOI: 10.1038/Nature19075  0.665
2016 Schraiber JG, Evans SN, Slatkin M. Bayesian Inference of Natural Selection from Allele Frequency Time Series. Genetics. PMID 27010022 DOI: 10.1534/Genetics.116.187278  0.564
2016 Vernot B, Tucci S, Kelso J, Schraiber JG, Wolf AB, Gittelman RM, Dannemann M, Grote S, McCoy RC, Norton H, Scheinfeldt LB, Merriwether DA, Koki G, Friedlaender JS, Wakefield J, et al. Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals. Science (New York, N.Y.). PMID 26989198 DOI: 10.1126/Science.Aad9416  0.688
2015 Schraiber JG, Akey JM. Methods and models for unravelling human evolutionary history. Nature Reviews. Genetics. PMID 26553329 DOI: 10.1038/Nrg4005  0.701
2015 Frantz LA, Schraiber JG, Madsen O, Megens HJ, Cagan A, Bosse M, Paudel Y, Crooijmans RP, Larson G, Groenen MA. Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes. Nature Genetics. 47: 1141-8. PMID 26323058 DOI: 10.1038/Ng.3394  0.516
2015 Schraiber JG, Landis MJ. Sensitivity of quantitative traits to mutational effects and number of loci. Theoretical Population Biology. 102: 85-93. PMID 25840144 DOI: 10.1016/J.Tpb.2015.03.005  0.373
2015 Frantz LA, Madsen O, Megens HJ, Schraiber JG, Paudel Y, Bosse M, Crooijmans RP, Larson G, Groenen MA. Evolution of Tibetan wild boars. Nature Genetics. 47: 188-9. PMID 25711859 DOI: 10.1038/Ng.3197  0.453
2014 Racimo F, Schraiber JG. Approximation to the distribution of fitness effects across functional categories in human segregating polymorphisms. Plos Genetics. 10: e1004697. PMID 25375159 DOI: 10.1371/Journal.Pgen.1004697  0.657
2014 Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 513: 409-13. PMID 25230663 DOI: 10.1038/Nature13673  0.659
2014 Schraiber JG. A path integral formulation of the Wright-Fisher process with genic selection. Theoretical Population Biology. 92: 30-5. PMID 24269333 DOI: 10.1016/J.Tpb.2013.11.002  0.315
2013 Schraiber JG, Mostovoy Y, Hsu TY, Brem RB. Inferring evolutionary histories of pathway regulation from transcriptional profiling data. Plos Computational Biology. 9: e1003255. PMID 24130471 DOI: 10.1371/Journal.Pcbi.1003255  0.443
2013 Frantz LA, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G, Groenen MA. Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology. 14: R107. PMID 24070215 DOI: 10.1186/Gb-2013-14-9-R107  0.667
2013 Schraiber JG, Griffiths RC, Evans SN. Analysis and rejection sampling of Wright-Fisher diffusion bridges. Theoretical Population Biology. 89: 64-74. PMID 24001410 DOI: 10.1016/J.Tpb.2013.08.005  0.305
2013 Landis MJ, Schraiber JG, Liang M. Phylogenetic analysis using Lévy processes: finding jumps in the evolution of continuous traits. Systematic Biology. 62: 193-204. PMID 23034385 DOI: 10.1093/Sysbio/Sys086  0.352
2012 Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, ... ... Schraiber JG, et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 491: 393-8. PMID 23151582 DOI: 10.1038/Nature11622  0.549
2012 Schraiber JG, Shih S, Slatkin M. Genomic tests of variation in inbreeding among individuals and among chromosomes. Genetics. 192: 1477-82. PMID 23051641 DOI: 10.1534/Genetics.112.145367  0.629
2012 Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344  0.737
2012 Martin HC, Roop JI, Schraiber JG, Hsu TY, Brem RB. Evolution of a membrane protein regulon in Saccharomyces. Molecular Biology and Evolution. 29: 1747-56. PMID 22319167 DOI: 10.1093/Molbev/Mss017  0.403
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