| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2024 |
Zhu X, Ma S, Wong WH. Genetic effects of sequence-conserved enhancer-like elements on human complex traits. Genome Biology. 25: 1. PMID 38167462 DOI: 10.1186/s13059-023-03142-1 |
0.01 |
|
| 2023 |
Davis KN, Qu PP, Ma S, Lin L, Plastini M, Dahl N, Plazzi G, Pizza F, O'Hara R, Wong WH, Hallmayer J, Mignot E, Zhang X, Urban AE. Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment. Human Molecular Genetics. PMID 37584462 DOI: 10.1093/hmg/ddad123 |
0.01 |
|
| 2023 |
Gao Z, Liu Q, Zeng W, Wong WH, Jiang R. EpiGePT: a Pretrained Transformer model for epigenomics. Biorxiv : the Preprint Server For Biology. PMID 37502861 DOI: 10.1101/2023.07.15.549134 |
0.01 |
|
| 2023 |
Li S, Zeng W, Ni X, Liu Q, Li W, Stackpole ML, Zhou Y, Gower A, Krysan K, Ahuja P, Lu DS, Raman SS, Hsu W, Aberle DR, Magyar CE, ... ... Wong WH, et al. Comprehensive tissue deconvolution of cell-free DNA by deep learning for disease diagnosis and monitoring. Proceedings of the National Academy of Sciences of the United States of America. 120: e2305236120. PMID 37399400 DOI: 10.1073/pnas.2305236120 |
0.01 |
|
| 2023 |
Johnson NA, London SJ, Romieu I, Wong WH, Tang H. ACCURATE CONSTRUCTION OF LONG RANGE HAPLOTYPE IN UNRELATED INDIVIDUALS. Statistica Sinica. 23: 1441-1461. PMID 37398638 DOI: 10.5705/ss.2012.141s |
0.01 |
|
| 2022 |
Feng Z, Duren Z, Xin J, Yuan Q, He Y, Su B, Wong WH, Wang Y. Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification. Elife. 11. PMID 36525361 DOI: 10.7554/eLife.82535 |
0.01 |
|
| 2022 |
Duren Z, Chang F, Naqing F, Xin J, Liu Q, Wong WH. Author Correction: Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG. Genome Biology. 23: 213. PMID 36229829 DOI: 10.1186/s13059-022-02786-9 |
0.01 |
|
| 2022 |
Zeng W, Liu Q, Yin Q, Jiang R, Wong WH. HiChIPdb: a comprehensive database of HiChIP regulatory interactions. Nucleic Acids Research. PMID 36215037 DOI: 10.1093/nar/gkac859 |
0.01 |
|
| 2022 |
Stackpole ML, Zeng W, Li S, Liu CC, Zhou Y, He S, Yeh A, Wang Z, Sun F, Li Q, Yuan Z, Yildirim A, Chen PJ, Winograd P, Tran B, ... ... Wong WH, et al. Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer. Nature Communications. 13: 5566. PMID 36175411 DOI: 10.1038/s41467-022-32995-6 |
0.01 |
|
| 2022 |
Xi X, Li H, Chen S, Lv T, Ma T, Jiang R, Zhang P, Wong WH, Zhang X. Unfolding the genotype-to-phenotype black box of cardiovascular diseases through cross-scale modeling. Iscience. 25: 104790. PMID 35992073 DOI: 10.1016/j.isci.2022.104790 |
0.01 |
|
| 2022 |
Lin X, Liu Y, Liu S, Zhu X, Wu L, Zhu Y, Zhao D, Xu X, Chemparathy A, Wang H, Cao Y, Nakamura M, Noordermeer JN, La Russa M, Wong WH, et al. Nested epistasis enhancer networks for robust genome regulation. Science (New York, N.Y.). eabk3512. PMID 35951677 DOI: 10.1126/science.abk3512 |
0.01 |
|
| 2022 |
Duren Z, Chang F, Naqing F, Xin J, Liu Q, Wong WH. Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG. Genome Biology. 23: 114. PMID 35578363 DOI: 10.1186/s13059-022-02682-2 |
0.01 |
|
| 2022 |
Jiang H, Li H, Wong W, Fan X. Revealing Free Energy Landscape from MD Data via Conditional Angle Partition Tree. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 35503836 DOI: 10.1109/TCBB.2022.3172352 |
0.01 |
|
| 2022 |
Liu Q, Hua K, Zhang X, Wong WH, Jiang R. DeepCAGE: Incorporating transcription factors in genome-wide prediction of chromatin accessibility. Genomics, Proteomics & Bioinformatics. PMID 35293310 DOI: 10.1016/j.gpb.2021.08.015 |
0.01 |
|
| 2022 |
Ma S, Chen X, Zhu X, Tsao PS, Wong WH. Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34930827 DOI: 10.1073/pnas.2115601119 |
0.01 |
|
| 2021 |
Duren Z, Lu WS, Arthur JG, Shah P, Xin J, Meschi F, Li ML, Nemec CM, Yin Y, Wong WH. Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data. Nature Communications. 12: 4763. PMID 34362918 DOI: 10.1038/s41467-021-25089-2 |
0.01 |
|
| 2021 |
Li S, Noor ZS, Zeng W, Stackpole ML, Ni X, Zhou Y, Yuan Z, Wong WH, Agopian VG, Dubinett SM, Alber F, Li W, Garon EB, Zhou XJ. Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis. Nature Communications. 12: 4172. PMID 34234141 DOI: 10.1038/s41467-021-24457-2 |
0.01 |
|
| 2021 |
Zou M, Duren Z, Yuan Q, Li H, Hutchins AP, Wong WH, Wang Y. MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting. Briefings in Bioinformatics. PMID 34180954 DOI: 10.1093/bib/bbab235 |
0.01 |
|
| 2021 |
Liu Q, Chen S, Jiang R, Wong WH. Simultaneous deep generative modeling and clustering of single cell genomic data. Nature Machine Intelligence. 3: 536-544. PMID 34179690 DOI: 10.1038/s42256-021-00333-y |
0.01 |
|
| 2021 |
Zhu X, Duren Z, Wong WH. Modeling regulatory network topology improves genome-wide analyses of complex human traits. Nature Communications. 12: 2851. PMID 33990562 DOI: 10.1038/s41467-021-22588-0 |
0.01 |
|
| 2021 |
Liu Q, Xu J, Jiang R, Wong WH. Density estimation using deep generative neural networks. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33833061 DOI: 10.1073/pnas.2101344118 |
0.01 |
|
| 2021 |
Feng Z, Duren Z, Xiong Z, Wang S, Liu F, Wong WH, Wang Y. hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context. Communications Biology. 4: 442. PMID 33824393 DOI: 10.1038/s42003-021-01970-0 |
0.01 |
|
| 2020 |
Zhang Y, Ouyang Z, Qian WJ, Smith RD, Wong WH, Davis RW. Meta-analysis of peptides to detect protein significance. Statistics and Its Interface. 13: 465-474. PMID 34055134 DOI: 10.4310/sii.2020.v13.n4.a4 |
0.01 |
|
| 2020 |
Xin J, Zhang H, He Y, Duren Z, Bai C, Chen L, Luo X, Yan DS, Zhang C, Zhu X, Yuan Q, Feng Z, Cui C, Qi X, Ouzhuluobu, ... Wong WH, et al. Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation. Nature Communications. 11: 4928. PMID 33004791 DOI: 10.1038/s41467-020-18638-8 |
0.01 |
|
| 2020 |
Zhang S, Zhang X, Purmann C, Ma S, Shrestha A, Davis KN, Ho M, Huang Y, Pattni R, Wong WH, Bernstein JA, Hallmayer J, Urban AE. Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons. Biological Psychiatry. PMID 32919612 DOI: 10.1016/J.Biopsych.2020.06.021 |
0.01 |
|
| 2020 |
Li W, Duren Z, Jiang R, Wong WH. A method for scoring the cell type-specific impacts of noncoding variants in personal genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817564 DOI: 10.1073/pnas.1922703117 |
0.01 |
|
| 2020 |
Duren Z, Chen X, Xin J, Wang Y, Wong W. Time course regulatory analysis based on paired expression and chromatin accessibility data. Genome Research. PMID 32188700 DOI: 10.1101/gr.257063.119 |
0.01 |
|
| 2020 |
Zhang X, Hong D, Ma S, Ward T, Ho M, Pattni R, Duren Z, Stankov A, Bade Shrestha S, Hallmayer J, Wong WH, Reiss AL, Urban AE. Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage. Proceedings of the National Academy of Sciences of the United States of America. PMID 32071206 DOI: 10.1073/Pnas.1910003117 |
0.01 |
|
| 2020 |
Zhang Y, Ouyang Z, Qian W, Smith RD, Wong WH, Davis RW. Meta-analysis of peptides to detect protein significance Statistics and Its Interface. 13: 465-474. DOI: 10.4310/Sii.2020.V13.N4.A4 |
0.01 |
|
| 2020 |
Lin Z, Zamanighomi M, Daley T, Ma S, Wong WH. Model-Based Approach to the Joint Analysis of Single-Cell Data on Chromatin Accessibility and Gene Expression Statistical Science. 35: 2-13. DOI: 10.1214/19-sts714 |
0.01 |
|
| 2019 |
Guan L, Chen X, Wong WH. Detecting strong signals in gene perturbation experiments: An adaptive approach with power guarantee and FDR control. Journal of the American Statistical Association. 2019. PMID 33311819 DOI: 10.1080/01621459.2019.1635484 |
0.01 |
|
| 2019 |
Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong WH. DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data. Nature Communications. 10: 4613. PMID 31601804 DOI: 10.1038/S41467-019-12547-1 |
0.01 |
|
| 2019 |
Li W, Wong WH, Jiang R. DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning. Nucleic Acids Research. PMID 30869141 DOI: 10.1093/Nar/Gkz167 |
0.01 |
|
| 2019 |
Zhou B, Ho SS, Greer SU, Spies N, Bell JM, Zhang X, Zhu X, Arthur JG, Byeon S, Pattni R, Saha I, Huang Y, Song G, Perrin D, Wong WH, et al. Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2. Nucleic Acids Research. PMID 30864654 DOI: 10.1093/Nar/Gkz169 |
0.01 |
|
| 2019 |
Zhou B, Ho SS, Greer SU, Zhu X, Bell JM, Arthur JG, Spies N, Zhang X, Byeon S, Pattni R, Ben-Efraim N, Haney MS, Haraksingh RR, Song G, Ji HP, ... ... Wong WH, et al. Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562. Genome Research. PMID 30737237 DOI: 10.1101/Gr.234948.118 |
0.01 |
|
| 2019 |
Li L, Wang Y, Torkelson JL, Shankar G, Pattison JM, Zhen HH, Fang F, Duren Z, Xin J, Gaddam S, Melo SP, Piekos SN, Li J, Liaw EJ, Chen L, ... ... Wong WH, et al. TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment. Cell Stem Cell. PMID 30686763 DOI: 10.1016/J.Stem.2018.12.012 |
0.01 |
|
| 2019 |
Li Q, Zhao K, Bustamante CD, Ma X, Wong WH. Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30675030 DOI: 10.1038/S41436-019-0439-8 |
0.01 |
|
| 2019 |
Hsu H, Wu T, Wan S, Wong WH, Lee C. QuatNet: Quaternion-Based Head Pose Estimation With Multiregression Loss Ieee Transactions On Multimedia. 21: 1035-1046. DOI: 10.1109/TMM.2018.2866770 |
0.01 |
|
| 2018 |
Lai BC, Wu TY, Chiu TH, Li KC, Lee CY, Chien WC, Wong WH. Towards High Performance Data Analytic on Heterogeneous Many-core Systems: A Study on Bayesian Sequential Partitioning. Journal of Parallel and Distributed Computing. 122: 36-50. PMID 30872894 DOI: 10.1016/j.jpdc.2018.07.011 |
0.01 |
|
| 2018 |
Liu Y, Yu C, Daley TP, Wang F, Cao WS, Bhate S, Lin X, Still C, Liu H, Zhao D, Wang H, Xie XS, Ding S, Wong WH, Wernig M, et al. CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming. Cell Stem Cell. PMID 30318302 DOI: 10.1016/J.Stem.2018.09.003 |
0.01 |
|
| 2018 |
Daley TP, Lin Z, Lin X, Liu Y, Wong WH, Qi LS. CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens. Genome Biology. 19: 159. PMID 30296940 DOI: 10.1186/S13059-018-1538-6 |
0.01 |
|
| 2018 |
Duren Z, Chen X, Zamanighomi M, Zeng W, Satpathy AT, Chang HY, Wang Y, Wong WH. Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations. Proceedings of the National Academy of Sciences of the United States of America. PMID 29987051 DOI: 10.1073/Pnas.1805681115 |
0.01 |
|
| 2018 |
Zamanighomi M, Lin Z, Daley T, Chen X, Duren Z, Schep A, Greenleaf WJ, Wong WH. Unsupervised clustering and epigenetic classification of single cells. Nature Communications. 9: 2410. PMID 29925875 DOI: 10.1038/S41467-018-04629-3 |
0.01 |
|
| 2018 |
Li W, Li Q, Kang S, Same M, Zhou Y, Sun C, Liu CC, Matsuoka L, Sher L, Wong WH, Alber F, Zhou XJ. CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data. Nucleic Acids Research. PMID 29897492 DOI: 10.1093/nar/gky423 |
0.01 |
|
| 2017 |
Liu L, Li D, Wong WH. Convergence rates of a partition based Bayesian multivariate density estimation method. Advances in Neural Information Processing Systems. 30: 4738-4746. PMID 31341369 |
0.01 |
|
| 2017 |
Wu M, Lin Z, Ma S, Chen T, Jiang R, Wong WH. Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks. Journal of Molecular Cell Biology. PMID 29300920 DOI: 10.1093/Jmcb/Mjx059 |
0.01 |
|
| 2017 |
Li YH, Li D, Samusik N, Wang X, Guan L, Nolan GP, Wong WH. Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks. Plos Computational Biology. 13: e1005875. PMID 29281633 DOI: 10.1371/Journal.Pcbi.1005875 |
0.01 |
|
| 2017 |
Carter AC, Chang HY, Church G, Dombkowski A, Ecker JR, Gil E, Giresi PG, Greely H, Greenleaf WJ, Hacohen N, He C, Hill D, Ko J, Kohane I, Kundaje A, ... ... Wong W, et al. Challenges and recommendations for epigenomics in precision health. Nature Biotechnology. 35: 1128-1132. PMID 29220033 DOI: 10.1038/Nbt.4030 |
0.01 |
|
| 2017 |
Sahraeian SME, Mohiyuddin M, Sebra R, Tilgner H, Afshar PT, Au KF, Bani Asadi N, Gerstein MB, Wong WH, Snyder MP, Schadt E, Lam HYK. Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis. Nature Communications. 8: 59. PMID 28680106 DOI: 10.1038/S41467-017-00050-4 |
0.01 |
|
| 2017 |
Afshar PT, Wong WH. COSINE: non-seeding method for mapping long noisy sequences. Nucleic Acids Research. PMID 28586438 DOI: 10.1093/nar/gkx511 |
0.01 |
|
| 2017 |
Duren Z, Chen X, Jiang R, Wang Y, Wong WH. Modeling gene regulation from paired expression and chromatin accessibility data. Proceedings of the National Academy of Sciences of the United States of America. PMID 28576882 DOI: 10.1073/Pnas.1704553114 |
0.01 |
|
| 2017 |
Zamanighomi M, Lin Z, Wang Y, Jiang R, Wong WH. Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data. Nucleic Acids Research. PMID 28472398 DOI: 10.1093/Nar/Gkx358 |
0.01 |
|
| 2017 |
Chen X, Yang H, Wong WH. Phased Genome Sequencing Through Chromosome Sorting. Methods in Molecular Biology (Clifton, N.J.). 1551: 171-188. PMID 28138847 DOI: 10.1007/978-1-4939-6750-6_10 |
0.01 |
|
| 2017 |
Tsai C, Yu W, Wong WH, Lee C. A 41.3/26.7 pJ per Neuron Weight RBM Processor Supporting On-Chip Learning/Inference for IoT Applications Ieee Journal of Solid-State Circuits. 52: 2601-2612. DOI: 10.1109/JSSC.2017.2715171 |
0.01 |
|
| 2016 |
Li D, Yang K, Wong WH. Density Estimation via Discrepancy Based Adaptive Sequential Partition. Advances in Neural Information Processing Systems. 29: 1091-1099. PMID 31327913 |
0.01 |
|
| 2016 |
Wang Y, Jiang R, Wong WH. Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data. National Science Review. 3: 240-251. PMID 28690910 DOI: 10.1093/Nsr/Nww025 |
0.01 |
|
| 2016 |
Lin Z, Yang C, Zhu Y, Duchi J, Fu Y, Wang Y, Jiang B, Zamanighomi M, Xu X, Li M, Sestan N, Zhao H, Wong WH. Simultaneous dimension reduction and adjustment for confounding variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930330 DOI: 10.1073/Pnas.1617317113 |
0.01 |
|
| 2016 |
Jiang H, Mu JC, Yang K, Du C, Lu L, Wong WH. Computational Aspects of Optional Pólya Tree. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 25: 301-320. PMID 27217713 DOI: 10.1080/10618600.2014.1002927 |
0.01 |
|
| 2016 |
Jiang H, Mu JC, Yang K, Du C, Lu L, Wong WH. Computational Aspects of Optional Pólya Tree Journal of Computational and Graphical Statistics. 25: 301-320. DOI: 10.1080/10618600.2014.1002927 |
0.01 |
|
| 2015 |
Durruthy-Durruthy J, Sebastiano V, Wossidlo M, Cepeda D, Cui J, Grow EJ, Davila J, Mall M, Wong WH, Wysocka J, Au KF, Reijo Pera RA. The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming. Nature Genetics. PMID 26595768 DOI: 10.1038/Ng.3449 |
0.01 |
|
| 2015 |
Mu JC, Tootoonchi Afshar P, Mohiyuddin M, Chen X, Li J, Bani Asadi N, Gerstein MB, Wong WH, Lam HY. Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods. Scientific Reports. 5: 14493. PMID 26412485 DOI: 10.1038/Srep14493 |
0.01 |
|
| 2015 |
Fang LT, Afshar PT, Chhibber A, Mohiyuddin M, Fan Y, Mu JC, Gibeling G, Barr S, Asadi NB, Gerstein MB, Koboldt DC, Wang W, Wong WH, Lam HY. An ensemble approach to accurately detect somatic mutations using SomaticSeq. Genome Biology. 16: 197. PMID 26381235 DOI: 10.1186/S13059-015-0758-2 |
0.01 |
|
| 2015 |
Taylor SE, Li YH, Smeriglio P, Rath M, Wong WH, Bhutani N. Stable 5-Hydroxymethylcytosine (5hmC) Acquisition Marks Gene Activation During Chondrogenic Differentiation. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 26363184 DOI: 10.1002/jbmr.2711 |
0.01 |
|
| 2015 |
Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF. Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing. Nucleic Acids Research. PMID 26040699 DOI: 10.1093/Nar/Gkv562 |
0.01 |
|
| 2015 |
Taylor SE, Henry Li Y, Wong WH, Bhutani N. Genome-wide mapping of DNA hydroxymethylation in osteoarthritic chondrocytes. Arthritis & Rheumatology (Hoboken, N.J.). PMID 25940674 DOI: 10.1002/art.39179 |
0.01 |
|
| 2015 |
Tsai CH, Chih YT, Wong WH, Lee CY. A Hardware-Efficient Sigmoid Function with Adjustable Precision for a Neural Network System Ieee Transactions On Circuits and Systems Ii: Express Briefs. 62: 1073-1077. DOI: 10.1109/TCSII.2015.2456531 |
0.01 |
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| 2014 |
Meister A, Du C, Li YH, Wong WH. Modeling stochastic noise in gene regulatory systems. Quantitative Biology. 2: 1-29. PMID 25632368 DOI: 10.1007/s40484-014-0025-7 |
0.01 |
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| 2014 |
Ma X, Xiao L, Wong WH. Learning regulatory programs by threshold SVD regression. Proceedings of the National Academy of Sciences of the United States of America. 111: 15675-80. PMID 25331876 DOI: 10.1073/Pnas.1417808111 |
0.01 |
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| 2014 |
Lo WS, Gardiner E, Xu Z, Lau CF, Wang F, Zhou JJ, Mendlein JD, Nangle LA, Chiang KP, Yang XL, Au KF, Wong WH, Guo M, Zhang M, Schimmel P. Human tRNA synthetase catalytic nulls with diverse functions. Science (New York, N.Y.). 345: 328-32. PMID 25035493 DOI: 10.1126/Science.1252943 |
0.01 |
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| 2014 |
Seok J, Tian L, Wong WH. Density estimation on multivariate censored data with optional Pólya tree Biostatistics. 15: 182-195. PMID 23902636 DOI: 10.1093/biostatistics/kxt025 |
0.01 |
|
| 2013 |
Au KF, Sebastiano V, Afshar PT, Durruthy JD, Lee L, Williams BA, van Bakel H, Schadt EE, Reijo-Pera RA, Underwood JG, Wong WH. Characterization of the human ESC transcriptome by hybrid sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: E4821-30. PMID 24282307 DOI: 10.1073/Pnas.1320101110 |
0.01 |
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| 2013 |
Brady JJ, Li M, Suthram S, Jiang H, Wong WH, Blau HM. Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq. Nature Cell Biology. 15: 1244-52. PMID 23995732 DOI: 10.1038/Ncb2835 |
0.01 |
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| 2013 |
Hiller D, Wong WH. Simultaneous isoform discovery and quantification from RNA-seq. Statistics in Biosciences. 5: 100-118. PMID 23888185 DOI: 10.1007/s12561-012-9069-2 |
0.01 |
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| 2013 |
Tan MH, Au KF, Leong DE, Foygel K, Wong WH, Yao MW. An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo. Molecular Systems Biology. 9: 632. PMID 23295861 DOI: 10.1038/msb.2012.65 |
0.01 |
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| 2013 |
Schadt EE, Banerjee O, Fang G, Feng Z, Wong WH, Zhang X, Kislyuk A, Clark TA, Luong K, Keren-Paz A, Chess A, Kumar V, Chen-Plotkin A, Sondheimer N, Korlach J, et al. Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases. Genome Research. 23: 129-41. PMID 23093720 DOI: 10.1101/Gr.136739.111 |
0.01 |
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| 2013 |
Tan MH, Au KF, Yablonovitch AL, Wills AE, Chuang J, Baker JC, Wong WH, Li JB. RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. Genome Research. 23: 201-16. PMID 22960373 DOI: 10.1101/Gr.141424.112 |
0.01 |
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| 2013 |
Meister A, Li YH, Choi B, Wong WH. Learning a nonlinear dynamical system model of gene regulation: A perturbed steady-state approach Annals of Applied Statistics. 7: 1311-1333. DOI: 10.1214/13-AOAS645 |
0.01 |
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| 2013 |
Lu L, Jiang H, Wong WH. Multivariate Density Estimation by Bayesian Sequential Partitioning Journal of the American Statistical Association. 108: 1402-1410. DOI: 10.1080/01621459.2013.813389 |
0.01 |
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| 2013 |
Hiller D, Wong WH. Simultaneous Isoform Discovery and Quantification from RNA-Seq Statistics in Biosciences. 5: 100-118. DOI: 10.1007/s12561-012-9069-2 |
0.01 |
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| 2012 |
Peterson KA, Nishi Y, Ma W, Vedenko A, Shokri L, Zhang X, McFarlane M, Baizabal JM, Junker JP, van Oudenaarden A, Mikkelsen T, Bernstein BE, Bailey TL, Bulyk ML, Wong WH, et al. Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning. Genes & Development. 26: 2802-16. PMID 23249739 DOI: 10.1101/Gad.207142.112 |
0.01 |
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| 2012 |
Lee J, Sayed N, Hunter A, Au KF, Wong WH, Mocarski ES, Pera RR, Yakubov E, Cooke JP. Activation of innate immunity is required for efficient nuclear reprogramming. Cell. 151: 547-58. PMID 23101625 DOI: 10.1016/J.Cell.2012.09.034 |
0.01 |
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| 2012 |
Au KF, Underwood JG, Lee L, Wong WH. Improving PacBio long read accuracy by short read alignment. Plos One. 7: e46679. PMID 23056399 DOI: 10.1371/journal.pone.0046679 |
0.01 |
|
| 2012 |
Park JS, Ma W, O'Brien LL, Chung E, Guo JJ, Cheng JG, Valerius MT, McMahon JA, Wong WH, McMahon AP. Six2 and Wnt regulate self-renewal and commitment of nephron progenitors through shared gene regulatory networks. Developmental Cell. 23: 637-51. PMID 22902740 DOI: 10.1016/J.Devcel.2012.07.008 |
0.01 |
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| 2012 |
Mu JC, Jiang H, Kiani A, Mohiyuddin M, Bani Asadi N, Wong WH. Fast and accurate read alignment for resequencing. Bioinformatics (Oxford, England). 28: 2366-73. PMID 22811546 DOI: 10.1093/Bioinformatics/Bts450 |
0.01 |
|
| 2012 |
Ma L, Wong WH, Owen AB. A sparse transmission disequilibrium test for haplotypes based on Bradley-Terry graphs. Human Heredity. 73: 52-61. PMID 22398955 DOI: 10.1159/000335937 |
0.01 |
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| 2011 |
Salzman J, Jiang H, Wong WH. Statistical Modeling of RNA-Seq Data. Statistical Science : a Review Journal of the Institute of Mathematical Statistics. 26. PMID 24307754 DOI: 10.1214/10-Sts343 |
0.01 |
|
| 2011 |
Ma W, Wong WH. The analysis of ChIP-seq data Methods in Enzymology. 497: 51-73. PMID 21601082 DOI: 10.1016/B978-0-12-385075-100003-2 |
0.01 |
|
| 2011 |
Pan Y, Ouyang Z, Wong WH, Baker JC. A new FACS approach isolates hESC derived endoderm using transcription factors. Plos One. 6: e17536. PMID 21408072 DOI: 10.1371/journal.pone.0017536 |
0.01 |
|
| 2011 |
Ji H, Jiang H, Ma W, Wong WH. Using CisGenome to analyze ChIP-chip and ChIP-seq data. Current Protocols in Bioinformatics. Unit2.13. PMID 21400695 DOI: 10.1002/0471250953.Bi0213S33 |
0.01 |
|
| 2011 |
Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, et al. Human transcriptome array for high-throughput clinical studies. Proceedings of the National Academy of Sciences of the United States of America. 108: 3707-12. PMID 21317363 DOI: 10.1073/Pnas.1019753108 |
0.01 |
|
| 2011 |
Ding Z, Wu CJ, Chu GC, Xiao Y, Ho D, Zhang J, Perry SR, Labrot ES, Wu X, Lis R, Hoshida Y, Hiller D, Hu B, Jiang S, Zheng H, ... ... Wong WH, et al. SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression. Nature. 470: 269-73. PMID 21289624 DOI: 10.1038/Nature09677 |
0.01 |
|
| 2011 |
Yang H, Chen X, Wong WH. Completely phased genome sequencing through chromosome sorting. Proceedings of the National Academy of Sciences of the United States of America. 108: 12-7. PMID 21169219 DOI: 10.1073/pnas.1016725108 |
0.01 |
|
| 2011 |
Zhou B, Wong WH. A bootstrap-based non-parametric ANOVA method with applications to factorial microarray data Statistica Sinica. 21: 495. DOI: 10.5705/SS.2011.023A |
0.01 |
|
| 2011 |
Ma L, Wong WH. Coupling optional pólya trees and the two sample problem Journal of the American Statistical Association. 106: 1553-1565. DOI: 10.1198/jasa.2011.tm10003 |
0.01 |
|
| 2011 |
Ji H, Jiang H, Ma W, Wong WH. Using CisGenome to analyze ChIP-chip and ChIP-seq data Current Protocols in Bioinformatics. 1-45. DOI: 10.1002/0471250953.bi0213s33 |
0.01 |
|
| 2010 |
Banerjee P, Choi B, Shahine LK, Jun SH, O'Leary K, Lathi RB, Westphal LM, Wong WH, Yao MW. Deep phenotyping to predict live birth outcomes in in vitro fertilization. Proceedings of the National Academy of Sciences of the United States of America. 107: 13570-5. PMID 20643955 DOI: 10.1073/pnas.1002296107 |
0.01 |
|
| 2010 |
Jiang H, Wang F, Dyer NP, Wong WH. CisGenome Browser: a flexible tool for genomic data visualization. Bioinformatics (Oxford, England). 26: 1781-2. PMID 20513664 DOI: 10.1093/bioinformatics/btq286 |
0.01 |
|
| 2010 |
Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, et al. Analysis of factorial time-course microarrays with application to a clinical study of burn injury. Proceedings of the National Academy of Sciences of the United States of America. 107: 9923-8. PMID 20479259 DOI: 10.1073/Pnas.1002757107 |
0.01 |
|
| 2010 |
Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP. Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Proceedings of the National Academy of Sciences of the United States of America. 107: 9736-41. PMID 20460306 DOI: 10.1073/Pnas.1004602107 |
0.01 |
|
| 2010 |
Li J, Jiang H, Wong WH. Modeling non-uniformity in short-read rates in RNA-Seq data. Genome Biology. 11: R50. PMID 20459815 DOI: 10.1186/gb-2010-11-5-r50 |
0.01 |
|
| 2010 |
Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Research. 38: 4570-8. PMID 20371516 DOI: 10.1093/Nar/Gkq211 |
0.01 |
|
| 2010 |
Tanner MA, Wong WH. From EM to data augmentation: The emergence of MCMC Bayesian computation in the 1980s Statistical Science. 25: 506-516. DOI: 10.1214/10-STS341 |
0.01 |
|
| 2010 |
Wong WH, Ma L. Optional Pólya tree and Bayesian inference Annals of Statistics. 38: 1433-1459. DOI: 10.1214/09-AOS755 |
0.01 |
|
| 2010 |
Banerjee P, Choi B, Lathi R, Westphal L, Wong W, Yao M. Personalized prediction of live birth outcomes in IVF Fertility and Sterility. 94: S52-S53. DOI: 10.1016/j.fertnstert.2010.07.204 |
0.01 |
|
| 2009 |
Ouyang Z, Zhou Q, Wong WH. ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells Proceedings of the National Academy of Sciences of the United States of America. 106: 21521-21526. PMID 19995984 DOI: 10.1073/pnas.0904863106 |
0.01 |
|
| 2009 |
Mok SC, Bonome T, Vathipadiekal V, Bell A, Johnson ME, Wong KK, Park DC, Hao K, Yip DK, Donninger H, Ozbun L, Samimi G, Brady J, Randonovich M, Pise-Masison CA, ... ... Wong WH, et al. A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2. Cancer Cell. 16: 521-32. PMID 19962670 DOI: 10.1016/J.Ccr.2009.10.018 |
0.01 |
|
| 2009 |
Paik JH, Ding Z, Narurkar R, Ramkissoon S, Muller F, Kamoun WS, Chae SS, Zheng H, Ying H, Mahoney J, Hiller D, Jiang S, Protopopov A, Wong WH, Chin L, et al. FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis. Cell Stem Cell. 5: 540-53. PMID 19896444 DOI: 10.1016/J.Stem.2009.09.013 |
0.01 |
|
| 2009 |
Hiller D, Jiang H, Xu W, Wong WH. Identifiability of isoform deconvolution from junction arrays and RNA-Seq. Bioinformatics (Oxford, England). 25: 3056-9. PMID 19762346 DOI: 10.1093/Bioinformatics/Btp544 |
0.01 |
|
| 2009 |
Zhou Q, Wong WH. Energy landscape of a spin-glass model: exploration and characterization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 051117. PMID 19518426 DOI: 10.1103/PhysRevE.79.051117 |
0.01 |
|
| 2009 |
Lin L, Liu S, Brockway H, Seok J, Jiang P, Wong WH, Xing Y. Using high-density exon arrays to profile gene expression in closely related species. Nucleic Acids Research. 37: e90. PMID 19474342 DOI: 10.1093/Nar/Gkp420 |
0.01 |
|
| 2009 |
Nishi Y, Ji H, Wong WH, McMahon AP, Vokes SA. Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system. Biochimica Et Biophysica Acta. 1789: 299-305. PMID 19445894 DOI: 10.1016/J.Bbagrm.2009.01.002 |
0.01 |
|
| 2009 |
Reijo Pera RA, DeJonge C, Bossert N, Yao M, Hwa Yang JY, Asadi NB, Wong W, Wong C, Firpo MT. Gene expression profiles of human inner cell mass cells and embryonic stem cells. Differentiation; Research in Biological Diversity. 78: 18-23. PMID 19398262 DOI: 10.1016/J.Diff.2009.03.004 |
0.01 |
|
| 2009 |
Jiang H, Wong WH. Statistical inferences for isoform expression in RNA-Seq Bioinformatics. 25: 1026-1032. PMID 19244387 DOI: 10.1093/bioinformatics/btp113 |
0.01 |
|
| 2009 |
Zhou Q, Wong WH. Energy landscape of a spin-glass model: Exploration and characterization Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 79. DOI: 10.1103/PhysRevE.79.051117 |
0.01 |
|
| 2008 |
Zheng H, Ying H, Yan H, Kimmelman AC, Hiller DJ, Chen AJ, Perry SR, Tonon G, Chu GC, Ding Z, Stommel JM, Dunn KL, Wiedemeyer R, You MJ, Brennan C, ... ... Wong WH, et al. Pten and p53 converge on c-Myc to control differentiation, self-renewal, and transformation of normal and neoplastic stem cells in glioblastoma. Cold Spring Harbor Symposia On Quantitative Biology. 73: 427-37. PMID 19150964 DOI: 10.1101/Sqb.2008.73.047 |
0.01 |
|
| 2008 |
Kapur K, Jiang H, Xing Y, Wong WH. Cross-hybridization modeling on Affymetrix exon arrays. Bioinformatics (Oxford, England). 24: 2887-93. PMID 18984598 DOI: 10.1093/Bioinformatics/Btn571 |
0.01 |
|
| 2008 |
Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology. 26: 1293-300. PMID 18978777 DOI: 10.1038/Nbt.1505 |
0.01 |
|
| 2008 |
Zheng H, Ying H, Yan H, Kimmelman AC, Hiller DJ, Chen AJ, Perry SR, Tonon G, Chu GC, Ding Z, Stommel JM, Dunn KL, Wiedemeyer R, You MJ, Brennan C, ... ... Wong WH, et al. p53 and Pten control neural and glioma stem/progenitor cell renewal and differentiation. Nature. 455: 1129-33. PMID 18948956 DOI: 10.1038/Nature07443 |
0.01 |
|
| 2008 |
Vokes SA, Ji H, Wong WH, McMahon AP. A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. Genes & Development. 22: 2651-63. PMID 18832070 DOI: 10.1101/Gad.1693008 |
0.01 |
|
| 2008 |
Jiang H, Wong WH. SeqMap: Mapping massive amount of oligonucleotides to the genome Bioinformatics. 24: 2395-2396. PMID 18697769 DOI: 10.1093/bioinformatics/btn429 |
0.01 |
|
| 2008 |
Jun SH, Choi B, Shahine L, Westphal LM, Behr B, Reijo Pera RA, Wong WH, Yao MWM. Defining human embryo phenotypes by cohort-specific prognostic factors Plos One. 3. PMID 18596962 DOI: 10.1371/journal.pone.0002562 |
0.01 |
|
| 2008 |
Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH. MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. Rna (New York, N.Y.). 14: 1470-9. PMID 18566192 DOI: 10.1261/Rna.1070208 |
0.01 |
|
| 2008 |
Zhou Q, Wong WH. Reconstructing the energy landscape of a distribution from Monte Carlo samples Annals of Applied Statistics. 2: 1307-1331. DOI: 10.1214/08-AOAS196 |
0.01 |
|
| 2008 |
Ellis B, Wong WH. Learning causal Bayesian network structures from experimental data Journal of the American Statistical Association. 103: 778-789. DOI: 10.1198/016214508000000193 |
0.01 |
|
| 2008 |
Foygel K, Jun S, Leong D, Choi B, Wong W, Yao M. Embryonic stem cell (ESC) pluripotency regulators have novel and critical roles in pre-blastocyst development Fertility and Sterility. 90: S46. DOI: 10.1016/j.fertnstert.2008.07.664 |
0.01 |
|
| 2007 |
Zhou Q, Chipperfield H, Melton DA, Wong WH. A gene regulatory network in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 16438-43. PMID 17940043 DOI: 10.1073/pnas.0701014104 |
0.01 |
|
| 2007 |
Kapur K, Xing Y, Ouyang Z, Wong WH. Exon arrays provide accurate assessments of gene expression. Genome Biology. 8: R82. PMID 17504534 DOI: 10.1186/Gb-2007-8-5-R82 |
0.01 |
|
| 2007 |
Xing Y, Ouyang Z, Kapur K, Scott MP, Wong WH. Assessing the conservation of mammalian gene expression using high-density exon arrays. Molecular Biology and Evolution. 24: 1283-5. PMID 17387099 DOI: 10.1093/Molbev/Msm061 |
0.01 |
|
| 2007 |
Paik JH, Kollipara R, Chu G, Ji H, Xiao Y, Ding Z, Miao L, Tothova Z, Horner JW, Carrasco DR, Jiang S, Gilliland DG, Chin L, Wong WH, Castrillon DH, et al. FoxOs are lineage-restricted redundant tumor suppressors and regulate endothelial cell homeostasis. Cell. 128: 309-23. PMID 17254969 DOI: 10.1016/J.Cell.2006.12.029 |
0.01 |
|
| 2007 |
Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, et al. Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays Plos Computational Biology. 3: e40. DOI: 10.1371/Journal.Pcbi.0030040 |
0.01 |
|
| 2007 |
Zhou Q, Wong WH. Coupling hidden Markov models for the discovery of Cis-regulatory modules in multiple species The Annals of Applied Statistics. 1: 36-65. DOI: 10.1214/07-AOAS103 |
0.01 |
|
| 2007 |
Goswami G, Liu JS, Wong WH. Evolutionary Monte Carlo Methods for Clustering Journal of Computational and Graphical Statistics. 16: 855-876. DOI: 10.1198/106186007X255072 |
0.01 |
|
| 2007 |
Tse PC, Wong WH. Spring Stiffnesses of Composite Circular Springs Embedded with Nickel Titanium Alloy Wire Hkie Transactions. 14: 43-53. DOI: 10.1080/1023697X.2007.10668077 |
0.01 |
|
| 2006 |
Xing Y, Kapur K, Wong WH. Probe selection and expression index computation of affymetrix exon arrays Plos One. 1. PMID 17183719 DOI: 10.1371/Journal.Pone.0000088 |
0.01 |
|
| 2006 |
Lipan O, Wong WH. Is the future biology Shakespearean or Newtonian? Molecular Biosystems. 2: 411-416. PMID 17153137 DOI: 10.1039/b607243g |
0.01 |
|
| 2006 |
Ji H, Vokes SA, Wong WH. A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors. Nucleic Acids Research. 34: e146. PMID 17090591 DOI: 10.1093/Nar/Gkl803 |
0.01 |
|
| 2006 |
Ji H, Wong WH. Computational biology: Toward deciphering gene regulatory information in mammalian genomes Biometrics. 62. PMID 16984301 DOI: 10.1111/j.1541-0420.2006.00625.x |
0.01 |
|
| 2006 |
Kou SC, Oh J, Wong WH. A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling. The Journal of Chemical Physics. 124: 244903. PMID 16821999 DOI: 10.1063/1.2208607 |
0.01 |
|
| 2006 |
Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, et al. Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays. Plos Computational Biology. 2: e41. PMID 16699594 DOI: 10.1371/Journal.Pcbi.0020041 |
0.01 |
|
| 2006 |
Zhang X, Lu X, Shi Q, Xu XQ, Leung HC, Harris LN, Iglehart JD, Miron A, Liu JS, Wong WH. Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. Bmc Bioinformatics. 7: 197. PMID 16606446 DOI: 10.1186/1471-2105-7-197 |
0.01 |
|
| 2006 |
Kim RS, Ji H, Wong WH. An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. Bmc Bioinformatics. 7: 44. PMID 16438730 DOI: 10.1186/1471-2105-7-44 |
0.01 |
|
| 2006 |
Kou SC, Zhou Q, Wong WH. Rejoinder The Annals of Statistics. 34: 1646-1652. DOI: 10.1214/009053606000000524 |
0.01 |
|
| 2006 |
Kou SC, Zhou Q, Wong WH. Equi-energy sampler with applications in statistical inference and statistical mechanics The Annals of Statistics. 34: 1581-1619. DOI: 10.1214/009053606000000515 |
0.01 |
|
| 2006 |
Wong WH. Estimation of the loss of an estimate Frontiers in Statistics: Dedicated to Peter John Bickel in Honor of His 65th Birthday. 491-506. DOI: 10.1142/9781860948886_0022 |
0.01 |
|
| 2006 |
Vokes SA, Ji H, Wong WH, McMahon AP. A tale of two morphogen gradients: Identifying Gli targets of Hedgehog Signaling Developmental Biology. 295: 423. DOI: 10.1016/J.Ydbio.2006.04.301 |
0.01 |
|
| 2006 |
Kim SW, Hufton A, Wong W, Baker J. Genomic analysis of endoderm transcription in Xenopus Developmental Biology. 295: 391. DOI: 10.1016/J.Ydbio.2006.04.200 |
0.01 |
|
| 2005 |
Bonome T, Park DC, Hao K, Donninger H, Radonovich M, Brady J, Barrett JC, Wong WH, Welch WR, Mok SC, Birrer MJ. Identification of a gene signature that can predict lone-term survival in patients with high-grade late stage serous ovarian cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 23: 5032. PMID 27946291 DOI: 10.1200/Jco.2005.23.16_Suppl.5032 |
0.01 |
|
| 2005 |
Bonome T, Lee JY, Park DC, Radonovich M, Pise-Masison C, Brady J, Gardner GJ, Hao K, Wong WH, Barrett JC, Lu KH, Sood AK, Gershenson DM, Mok SC, Birrer MJ. Expression profiling of serous low malignant potential, low-grade, and high-grade tumors of the ovary. Cancer Research. 65: 10602-12. PMID 16288054 DOI: 10.1158/0008-5472.Can-05-2240 |
0.01 |
|
| 2005 |
Li X, Zhong S, Wong WH. Reliable prediction of transcription factor binding sites by phylogenetic verification. Proceedings of the National Academy of Sciences of the United States of America. 102: 16945-50. PMID 16286651 DOI: 10.1073/pnas.0504201102 |
0.01 |
|
| 2005 |
Leykin I, Kao MC, Wong WH. HumanUpstream and MouseUpstream: databases of promoter sequences in the human and mouse genomes. Omics : a Journal of Integrative Biology. 9: 220-4. PMID 16209636 DOI: 10.1089/omi.2005.9.220 |
0.01 |
|
| 2005 |
Ji H, Wong WH. TileMap: Create chromosomal map of tiling array hybridizations Bioinformatics. 21: 3629-3636. PMID 16046496 DOI: 10.1093/Bioinformatics/Bti593 |
0.01 |
|
| 2005 |
Dannenberg JH, David G, Zhong S, van der Torre J, Wong WH, Depinho RA. mSin3A corepressor regulates diverse transcriptional networks governing normal and neoplastic growth and survival. Genes & Development. 19: 1581-95. PMID 15998811 DOI: 10.1101/Gad.1286905 |
0.01 |
|
| 2005 |
Li X, Wong WH. Sampling motifs on phylogenetic trees. Proceedings of the National Academy of Sciences of the United States of America. 102: 9481-6. PMID 15983378 DOI: 10.1073/pnas.0501620102 |
0.01 |
|
| 2005 |
Dorer RK, Zhong S, Tallarico JA, Wong WH, Mitchison TJ, Murray AW. A small-molecule inhibitor of Mps1 blocks the spindle-checkpoint response to a lack of tension on mitotic chromosomes. Current Biology : Cb. 15: 1070-6. PMID 15936280 DOI: 10.1016/J.Cub.2005.05.020 |
0.01 |
|
| 2005 |
Lipan O, Wong WH. The use of oscillatory signals in the study of genetic networks Proceedings of the National Academy of Sciences of the United States of America. 102: 7063-7068. PMID 15883385 DOI: 10.1073/pnas.0403790102 |
0.01 |
|
| 2005 |
Bardeesy N, Kim M, Xu J, Kim RS, Shen Q, Bosenberg MW, Wong WH, Chin L. Role of epidermal growth factor receptor signaling in RAS-driven melanoma. Molecular and Cellular Biology. 25: 4176-88. PMID 15870287 DOI: 10.1128/MCB.25.10.4176-4188.2005 |
0.01 |
|
| 2005 |
Tang D, Khaleque MA, Jones EL, Theriault JR, Li C, Wong WH, Stevenson MA, Calderwood SK. Expression of heat shock proteins and heat shock protein messenger ribonucleic acid in human prostate carcinoma in vitro and in tumors in vivo. Cell Stress & Chaperones. 10: 46-58. PMID 15832947 DOI: 10.1379/CSC-44R.1 |
0.01 |
|
| 2005 |
Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. A boosting approach for motif modeling using ChIP-chip data. Bioinformatics (Oxford, England). 21: 2636-43. PMID 15817698 DOI: 10.1093/Bioinformatics/Bti402 |
0.01 |
|
| 2005 |
Tseng GC, Wong WH. Tight clustering: A resampling-based approach for identifying stable and tight patterns in data Biometrics. 61: 10-16. PMID 15737073 DOI: 10.1111/j.0006-341X.2005.031032.x |
0.01 |
|
| 2005 |
Leykin I, Hao K, Cheng J, Meyer N, Pollak MR, Smith RJ, Wong WH, Rosenow C, Li C. Comparative linkage analysis and visualization of high-density oligonucleotide SNP array data. Bmc Genetics. 6: 7. PMID 15713228 DOI: 10.1186/1471-2156-6-7 |
0.01 |
|
| 2005 |
Hong P, Wong WH. GeneNotes--a novel information management software for biologists. Bmc Bioinformatics. 6: 20. PMID 15686593 DOI: 10.1186/1471-2105-6-20 |
0.01 |
|
| 2005 |
Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nature Biotechnology. 23: 238-43. PMID 15654329 DOI: 10.1038/Nbt1058 |
0.01 |
|
| 2005 |
HONG P, ZHONG S, WONG WH. UBIC2 — TOWARDS UBIQUITOUS BIO-INFORMATION COMPUTING: DATA PROTOCOLS, MIDDLEWARE, AND WEB SERVICES FOR HETEROGENEOUS BIOLOGICAL INFORMATION INTEGRATION AND RETRIEVAL International Journal of Software Engineering and Knowledge Engineering. 15: 475-485. DOI: 10.1142/S0218194005001951 |
0.01 |
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| 2004 |
Zhong S, Tian L, Li C, Storch KF, Wong WH. Comparative analysis of gene sets in the Gene Ontology space under the multiple hypothesis testing framework. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 425-35. PMID 16448035 DOI: 10.1109/csb.2004.1332455 |
0.01 |
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| 2004 |
Zhong S, Storch KF, Lipan O, Kao MC, Weitz CJ, Wong WH. GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space. Applied Bioinformatics. 3: 261-4. PMID 15702958 DOI: 10.2165/00822942-200403040-00009 |
0.01 |
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| 2004 |
Xu XQ, Leow CK, Lu X, Zhang X, Liu JS, Wong WH, Asperger A, Deininger S, Eastwood Leung HC. Molecular classification of liver cirrhosis in a rat model by proteomics and bioinformatics. Proteomics. 4: 3235-45. PMID 15378689 DOI: 10.1002/pmic.200400839 |
0.01 |
|
| 2004 |
Zhou Q, Wong WH. CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling Proceedings of the National Academy of Sciences of the United States of America. 101: 12114-12119. PMID 15297614 DOI: 10.1073/pnas.0402858101 |
0.01 |
|
| 2004 |
Cui Y, Zhou M, Wong WH. Integrated analysis of microarray data and gene function information. Omics : a Journal of Integrative Biology. 8: 106-17. PMID 15268770 DOI: 10.1089/1536231041388320 |
0.01 |
|
| 2004 |
Cai L, Huang H, Blackshaw S, Liu JS, Cepko C, Wong WH. Clustering analysis of SAGE data using a Poisson approach. Genome Biology. 5: R51. PMID 15239836 DOI: 10.1186/Gb-2004-5-7-R51 |
0.01 |
|
| 2004 |
Bachoo RM, Kim RS, Ligon KL, Maher EA, Brennan C, Billings N, Chan S, Li C, Rowitch DH, Wong WH, DePinho RA. Molecular diversity of astrocytes with implications for neurological disorders. Proceedings of the National Academy of Sciences of the United States of America. 101: 8384-9. PMID 15155908 DOI: 10.1073/Pnas.0402140101 |
0.01 |
|
| 2004 |
Huang H, Kao MC, Zhou X, Liu JS, Wong WH. Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 1-14. PMID 15072685 DOI: 10.1089/106652704773416858 |
0.01 |
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| 2004 |
Lin M, Wei LJ, Sellers WR, Lieberfarb M, Wong WH, Li C. dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data. Bioinformatics (Oxford, England). 20: 1233-40. PMID 14871870 DOI: 10.1093/Bioinformatics/Bth069 |
0.01 |
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| 2003 |
O'Hagan RC, Brennan CW, Strahs A, Zhang X, Kannan K, Donovan M, Cauwels C, Sharpless NE, Wong WH, Chin L. Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma. Cancer Research. 63: 5352-6. PMID 14500367 |
0.01 |
|
| 2003 |
Zhong S, Li C, Wong WH. ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis. Nucleic Acids Research. 31: 3483-6. PMID 12824349 |
0.01 |
|
| 2003 |
Zhou X, Krueger JG, Kao MC, Lee E, Du F, Menter A, Wong WH, Bowcock AM. Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array. Physiological Genomics. 13: 69-78. PMID 12644634 DOI: 10.1152/Physiolgenomics.00157.2002 |
0.01 |
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| 2003 |
Shen X, Tseng GC, Zhang X, Wong WH. On ψ-Learning Journal of the American Statistical Association. 98: 724-734. DOI: 10.1198/016214503000000639 |
0.01 |
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| 2003 |
Tseng GC, Wong WH. A method for tight clustering: With application to microarray Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 396-397. DOI: 10.1109/CSB.2003.1227343 |
0.01 |
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| 2003 |
Tam HL, Huber R, Li KF, Wong WH, Pun YB, So SK, Cheah KW. Active textured metallic microcavity Physica E: Low-Dimensional Systems and Nanostructures. 17: 446-448. DOI: 10.1016/S1386-9477(02)00831-7 |
0.01 |
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| 2002 |
Zhou X, Kao MC, Wong WH. Transitive functional annotation by shortest-path analysis of gene expression data. Proceedings of the National Academy of Sciences of the United States of America. 99: 12783-8. PMID 12196633 DOI: 10.1073/pnas.192159399 |
0.01 |
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| 2002 |
Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ. Extensive and divergent circadian gene expression in liver and heart. Nature. 417: 78-83. PMID 11967526 DOI: 10.1038/nature744 |
0.01 |
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| 2002 |
Block-Alper L, Webster P, Zhou X, Supeková L, Wong WH, Schultz PG, Meyer DI. IN02, a positive regulator of lipid biosynthesis, is essential for the formation of inducible membranes in yeast. Molecular Biology of the Cell. 13: 40-51. PMID 11809821 DOI: 10.1091/Mbc.01-07-0366 |
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| 2002 |
Cui Y, Wong WH, Bornberg-Bauer E, Chan HS. Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes. Proceedings of the National Academy of Sciences of the United States of America. 99: 809-14. PMID 11805332 DOI: 10.1073/Pnas.022240299 |
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| 2002 |
Lai HM, Lau YP, Wong WH. Understanding wave characteristics via linear superposition of retarded fields American Journal of Physics. 70: 173-179. DOI: 10.1119/1.1427085 |
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| 2002 |
Storch K, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ. Erratum: corrigendum: Extensive and divergent circadian gene expression in liver and heart Nature. 418: 665-665. DOI: 10.1038/Nature00960 |
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| 2002 |
Hakak Y, Walker J, Li C, Wong W, Davis K, Buxbaum J, Haroutunian V, Fienberg A. Genome-wide expression analysis reveals dyregulation of myelination-related genes in chronic schizophrenia European Psychiatry. 17: 24. DOI: 10.1016/S0924-9338(02)80108-0 |
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| 2001 |
Bhattacharjee A, Richards WG, Staunton J, Li C, Monti S, Vasa P, Ladd C, Beheshti J, Bueno R, Gillette M, Loda M, Weber G, Mark EJ, Lander ES, Wong W, et al. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proceedings of the National Academy of Sciences of the United States of America. 98: 13790-5. PMID 11707567 DOI: 10.1073/Pnas.191502998 |
0.01 |
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| 2001 |
Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research. 29: 2549-57. PMID 11410663 DOI: 10.1093/Nar/29.12.2549 |
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| 2001 |
Hakak Y, Walker JR, Li C, Wong WH, Davis KL, Buxbaum JD, Haroutunian V, Fienberg AA. Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. Proceedings of the National Academy of Sciences of the United States of America. 98: 4746-51. PMID 11296301 DOI: 10.1073/Pnas.081071198 |
0.01 |
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| 2001 |
Liang F, Wong WH. Real-Parameter Evolutionary Monte Carlo With Applications to Bayesian Mixture Models Journal of the American Statistical Association. 96: 653-666. DOI: 10.1198/016214501753168325 |
0.01 |
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| 2001 |
Liu JS, Liang F, Wong WH. A Theory for Dynamic Weighting in Monte Carlo Computation Journal of the American Statistical Association. 96: 561-573. DOI: 10.1198/016214501753168253 |
0.01 |
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| 2001 |
Wong WH, Pun EYB. Exposure characteristics and three-dimensional profiling of SU8C resist using electron beam lithography Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 19: 732-735. DOI: 10.1116/1.1368678 |
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| 2001 |
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection Proceedings of the National Academy of Sciences. 98: 31-36. DOI: 10.1073/PNAS.98.1.31 |
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| 2001 |
Liang F, Wong WH. Evolutionary Monte Carlo for protein folding simulations Journal of Chemical Physics. 115: 3374-3380. DOI: 10.1063/1.1387478 |
0.01 |
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| 2000 |
Cui Y, Chen RS, Wong WH. The coevolution of cell senescence and diploid sexual reproduction in unicellular organisms. Proceedings of the National Academy of Sciences of the United States of America. 97: 3330-5. PMID 10737794 DOI: 10.1073/PNAS.97.7.3330 |
0.01 |
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| 2000 |
Wong WH. Computational Molecular Biology Journal of the American Statistical Association. 95: 322-326. DOI: 10.1080/01621459.2000.10473934 |
0.01 |
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| 2000 |
Liu JS, Liang F, Wong WH. The Multiple-Try Method and Local Optimization in Metropolis Sampling Journal of the American Statistical Association. 95: 121-134. DOI: 10.1080/01621459.2000.10473908 |
0.01 |
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| 1999 |
Wu X, Wen J, Wong WH. Conditional entropy coding of VQ indexes for image compression Ieee Transactions On Image Processing. 8: 1005-1013. DOI: 10.1109/83.777082 |
0.01 |
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| 1999 |
Shen X, Shi J, Wong WH. Random Sieve Likelihood and General Regression Models Journal of the American Statistical Association. 94: 835-846. DOI: 10.1080/01621459.1999.10474188 |
0.01 |
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| 1999 |
Clark WG, Hanson ME, Wong WH, Alavi B. NMR investigation of spin density wave repinning in (TMTSF)2PF6 Le Journal De Physique Iv. 9: Pr10-3-Pr10-3. DOI: 10.1051/jp4:19991001 |
0.01 |
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| 1999 |
Liang F, Wong WH. Dynamic weighting in simulations of spin systems Physics Letters A. 252: 257-262. DOI: 10.1016/S0375-9601(99)00006-7 |
0.01 |
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| 1998 |
Wong WH, Cui Y, Chen RS. Torsional relaxation for biopolymers. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 655-65. PMID 10072082 DOI: 10.1089/cmb.1998.5.655 |
0.01 |
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| 1998 |
Cui Y, Chen RS, Wong WH. Molecular dynamic simulation of chaperonin-mediated protein folding. Journal of Protein Chemistry. 17: 377-80. PMID 9619590 DOI: 10.1023/A:1022511417343 |
0.01 |
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| 1998 |
Cui Y, Chen RS, Wong WH. Protein folding simulation with genetic algorithm and supersecondary structure constraints. Proteins. 31: 247-57. PMID 9593196 DOI: 10.1002/(SICI)1097-0134(19980515)31:3<247::AID-PROT2>3.0.CO;2-G |
0.01 |
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| 1998 |
Liu JS, Chen R, Wong WH. Rejection Control and Sequential Importance Sampling Journal of the American Statistical Association. 93: 1022-1031. DOI: 10.1080/01621459.1998.10473764 |
0.01 |
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| 1998 |
Wong W, Lo C. Optimal coupled-cluster approximation for the ground-state properties of a spin-boson model The European Physical Journal B. 6: 213-223. DOI: 10.1007/S100510050544 |
0.01 |
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| 1997 |
Kong A, Liu JS, Wong WH. The properties of the cross-match estimate and split sampling The Annals of Statistics. 25: 2410-2432. DOI: 10.1214/AOS/1030741079 |
0.01 |
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| 1997 |
Wong WH, Liang F. Dynamic weighting in Monte Carlo and optimization Proceedings of the National Academy of Sciences of the United States of America. 94: 14220-14224. DOI: 10.1073/pnas.94.26.14220 |
0.01 |
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| 1996 |
Seltzer MH, Wong WH, Bryk AS. Bayesian Analysis in Applications of Hierarchical Models: Issues and Methods Journal of Educational and Behavioral Statistics. 21: 131-167. DOI: 10.3102/10769986021002131 |
0.01 |
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| 1995 |
Wong WH. Comment Statistical Science. 10: 52-53. DOI: 10.1214/ss/1177010128 |
0.01 |
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| 1995 |
Wong WH, Shen X. Probability Inequalities for Likelihood Ratios and Convergence Rates of Sieve MLES The Annals of Statistics. 23: 339-362. DOI: 10.1214/AOS/1176324524 |
0.01 |
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| 1995 |
Liu JS, Wong WH, Kong A. Covariance Structure and Convergence Rate of the Gibbs Sampler with Various Scans Journal of the Royal Statistical Society: Series B (Methodological). 57: 157-169. DOI: 10.1111/J.2517-6161.1995.TB02021.X |
0.01 |
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| 1994 |
Shen X, Wong WH. Convergence Rate of Sieve Estimates The Annals of Statistics. 22: 580-615. DOI: 10.1214/AOS/1176325486 |
0.01 |
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| 1994 |
Ouyang X, Wong WH, Johnson VE, Hu X, Chen CT. Incorporation of Correlated Structural Images in PET Image Reconstruction Ieee Transactions On Medical Imaging. 13: 627-640. DOI: 10.1109/42.363105 |
0.01 |
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| 1994 |
Liu JS, Wong WH, Kong A. Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes Biometrika. 81: 27-40. DOI: 10.1093/biomet/81.1.27 |
0.01 |
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| 1994 |
Kong A, Liu JS, Wong WH. Sequential Imputations and Bayesian Missing Data Problems Journal of the American Statistical Association. 89: 278-288. DOI: 10.1080/01621459.1994.10476469 |
0.01 |
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| 1993 |
Chen C, Kapp OH, Wong WH. STOCHASTIC RECONSTRUCTION OF INCOMPLETE DATA SETS USING GIBBS PRIORS IN POSITRON EMISSION TOMOGRAPHY Investigative Radiology. 28: 1210. DOI: 10.1097/00004424-199312000-00138 |
0.01 |
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| 1993 |
CLARK WG, HANSON ME, WONG WH, ALAVI B. Proton NMR study of spin density wave thermal fluctuations in (TMTSF)2PF6, where TMTSF is tetramethyltetraselenafulvalene Le Journal De Physique Iv. 3: C2-235-C2-242. DOI: 10.1051/JP4:1993247 |
0.01 |
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| 1992 |
Severini TA, Wong WH. Profile Likelihood and Conditionally Parametric Models The Annals of Statistics. 20: 1768-1802. DOI: 10.1214/Aos/1176348889 |
0.01 |
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| 1992 |
Ouyang X, Chen C-, Wong WH, Cooper M. IMPROVING IMAGE QUALITIES IN NUCLEAR MEDICINE BY BAYESIAN PROCESSING TECHNIQUE Investigative Radiology. 27: 1106. DOI: 10.1097/00004424-199212000-00130 |
0.01 |
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| 1992 |
Pan X, Liu J, Chen C-, Wong WH. ATTENUATION CORRECTION IN SPECT Investigative Radiology. 27: 1106. DOI: 10.1097/00004424-199212000-00129 |
0.01 |
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| 1992 |
Wong WH, Li B. Laplace expansion for posterior densities of nonlinear functions of parameters Biometrika. 79: 393-398. DOI: 10.1093/biomet/79.2.393 |
0.01 |
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| 1991 |
Wong WH, Severini TA. On Maximum Likelihood Estimation in Infinite Dimensional Parameter Spaces The Annals of Statistics. 19: 603-632. DOI: 10.1214/Aos/1176348113 |
0.01 |
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| 1991 |
Wong WH, Hu X, Chen CT, Johnson VE. Image Restoration Using Gibbs Priors: Boundary Modeling, Treatment of Blurring, and Selection of Hyperparameter Ieee Transactions On Pattern Analysis and Machine Intelligence. 13: 413-425. DOI: 10.1109/34.134041 |
0.01 |
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| 1991 |
Chen CT, Ouyang X, Ordonez C, Metz CE, Wong WH, Hu X, Johnson VE. Sensor Fusion In Image Reconstruction Ieee Transactions On Nuclear Science. 38: 687-692. DOI: 10.1109/23.289375 |
0.01 |
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| 1990 |
Chen CT, Hu X, Metz CE, Johnson VE, Wong WH. Bayesian image reconstruction in positron emission tomography Ieee Transactions On Nuclear Science. 37: 636-641. DOI: 10.1109/23.106690 |
0.01 |
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| 1990 |
Leung SF, Wong WH. Nonparametric hazard estimation with time-varying discrete covariates Journal of Econometrics. 45: 309-330. DOI: 10.1016/0304-4076(90)90002-B |
0.01 |
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| 1987 |
Tanner MA, Wong WH. The Calculation of Posterior Distributions by Data Augmentation: Rejoinder Journal of the American Statistical Association. 82: 548. DOI: 10.2307/2289463 |
0.01 |
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| 1987 |
Tanner MA, Wong WH. The calculation of posterior distributions by data augmentation Journal of the American Statistical Association. 82: 528-540. DOI: 10.1080/01621459.1987.10478458 |
0.01 |
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| 1987 |
Dyn N, Wong WH. On the characterization of non-negative volume-matching surface splines Journal of Approximation Theory. 51: 1-10. DOI: 10.1016/0021-9045(87)90089-X |
0.01 |
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| 1986 |
Wong WH. Theory of Partial Likelihood The Annals of Statistics. 14: 88-123. DOI: 10.1214/aos/1176349844 |
0.01 |
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| 1984 |
Tanner MA, Wong WH. Data-Based nonparametric estimation of the hazard function with applications to model diagnostics and exploratory analysis Journal of the American Statistical Association. 79: 174-182. DOI: 10.1080/01621459.1984.10477081 |
0.01 |
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| 1984 |
Wong WH. On constrained multivariate splines and their approximations Numerische Mathematik. 43: 141-152. DOI: 10.1007/BF01389643 |
0.01 |
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| 1983 |
Tanner MA, Wong WH. A Reanalysis of the Standford Heart Transplant Data: Comment Journal of the American Statistical Association. 78: 286. DOI: 10.2307/2288626 |
0.01 |
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| 1983 |
Wong WH. On the Consistency of Cross-Validation in Kernel Nonparametric Regression The Annals of Statistics. 11: 1136-1141. DOI: 10.1214/aos/1176346327 |
0.01 |
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| 1983 |
Tanner MA, Wong WH. The Estimation of the Hazard Function from Randomly Censored Data by the Kernel Method The Annals of Statistics. 11: 989-993. DOI: 10.1214/aos/1176346265 |
0.01 |
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| 1983 |
Wong WH. A note on the modified likelihood for density estimation Journal of the American Statistical Association. 78: 461-463. DOI: 10.1080/01621459.1983.10477995 |
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