Jonathan Paul Binkley

Affiliations: 
2001 Stanford University, Palo Alto, CA 
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"Jonathan Binkley"

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David Botstein grad student 2001 Stanford
 (Actin overexpression studies in Saccharomyces cerevisiae.)
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Publications

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Skrzypek MS, Binkley J, Sherlock G. (2022) How to Use the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 2542: 55-69
Skrzypek MS, Binkley J, Sherlock G. (2019) Using the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 1757: 31-47
Skrzypek MS, Binkley J, Binkley G, et al. (2016) The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Research. 45: D592-D596
Skrzypek MS, Binkley J, Sherlock G. (2016) How to Use the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 1356: 3-15
Cerqueira GC, Arnaud MB, Inglis DO, et al. (2014) The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Research. 42: D705-10
Binkley J, Arnaud MB, Inglis DO, et al. (2014) The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. Nucleic Acids Research. 42: D711-6
Inglis DO, Binkley J, Skrzypek MS, et al. (2013) Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae. Bmc Microbiology. 13: 91
Inglis DO, Skrzypek MS, Arnaud MB, et al. (2013) Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans. Eukaryotic Cell. 12: 101-8
Arnaud MB, Cerqueira GC, Inglis DO, et al. (2012) The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Research. 40: D653-9
Inglis DO, Arnaud MB, Binkley J, et al. (2012) The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata. Nucleic Acids Research. 40: D667-74
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