Jonathan Paul Binkley - Publications

Affiliations: 
2001 Stanford University, Palo Alto, CA 

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Skrzypek MS, Binkley J, Sherlock G. How to Use the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 2542: 55-69. PMID 36008656 DOI: 10.1007/978-1-0716-2549-1_4  0.724
2019 Skrzypek MS, Binkley J, Sherlock G. Using the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 1757: 31-47. PMID 29761455 DOI: 10.1007/978-1-4939-7737-6_3  0.759
2016 Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G. The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Research. 45: D592-D596. PMID 27738138 DOI: 10.1093/Nar/Gkw924  0.721
2016 Skrzypek MS, Binkley J, Sherlock G. How to Use the Candida Genome Database. Methods in Molecular Biology (Clifton, N.J.). 1356: 3-15. PMID 26519061 DOI: 10.1007/978-1-4939-3052-4_1  0.762
2014 Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR. The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Research. 42: D705-10. PMID 24194595 DOI: 10.1093/Nar/Gkt1029  0.731
2014 Binkley J, Arnaud MB, Inglis DO, Skrzypek MS, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G. The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. Nucleic Acids Research. 42: D711-6. PMID 24185697 DOI: 10.1093/Nar/Gkt1046  0.727
2013 Inglis DO, Binkley J, Skrzypek MS, Arnaud MB, Cerqueira GC, Shah P, Wymore F, Wortman JR, Sherlock G. Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae. Bmc Microbiology. 13: 91. PMID 23617571 DOI: 10.1186/1471-2180-13-91  0.717
2013 Inglis DO, Skrzypek MS, Arnaud MB, Binkley J, Shah P, Wymore F, Sherlock G. Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans. Eukaryotic Cell. 12: 101-8. PMID 23143685 DOI: 10.1128/Ec.00238-12  0.656
2012 Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, et al. The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Research. 40: D653-9. PMID 22080559 DOI: 10.1093/Nar/Gkr875  0.702
2012 Inglis DO, Arnaud MB, Binkley J, Shah P, Skrzypek MS, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G. The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata. Nucleic Acids Research. 40: D667-74. PMID 22064862 DOI: 10.1093/Nar/Gkr945  0.738
2010 Zaghloul NA, Liu Y, Gerdes JM, Gascue C, Oh EC, Leitch CC, Bromberg Y, Binkley J, Leibel RL, Sidow A, Badano JL, Katsanis N. Functional analyses of variants reveal a significant role for dominant negative and common alleles in oligogenic Bardet-Biedl syndrome. Proceedings of the National Academy of Sciences of the United States of America. 107: 10602-7. PMID 20498079 DOI: 10.1073/Pnas.1000219107  0.309
2010 Binkley J, Karra K, Kirby A, Hosobuchi M, Stone EA, Sidow A. ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses. Genome Research. 20: 142-54. PMID 19846609 DOI: 10.1101/Gr.097121.109  0.393
2008 Hughes I, Binkley J, Hurle B, Green ED, Sidow A, Ornitz DM. Identification of the Otopetrin Domain, a conserved domain in vertebrate otopetrins and invertebrate otopetrin-like family members. Bmc Evolutionary Biology. 8: 41. PMID 18254951 DOI: 10.1186/1471-2148-8-41  0.357
2006 Jackson PJ, Douglas NR, Chai B, Binkley J, Sidow A, Barsh GS, Millhauser GL. Structural and molecular evolutionary analysis of Agouti and Agouti-related proteins. Chemistry & Biology. 13: 1297-305. PMID 17185225 DOI: 10.1016/J.Chembiol.2006.10.006  0.312
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