Jurg Bahler - Publications

Affiliations: 
Genetics, Evolution & Environment University College London, London, United Kingdom 
Area:
genome regulation
Website:
http://www.bahlerlab.info/

141 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Atkinson S, Marguerat S, Bitton D, Bachand F, Rodriguez-Lopez M, Rallis C, Lemay JF, Cotobal C, Malecki M, Smialowski P, Mata J, Korber P, Bahler J. Long non-coding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease and RNAi in fission yeast. Rna (New York, N.Y.). PMID 29914874 DOI: 10.1261/rna.065524.118  1
2015 Bitton DA, Schubert F, Dey S, Okoniewski M, Smith GC, Khadayate S, Pancaldi V, Wood V, Bähler J. AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast. Frontiers in Genetics. 6: 330. PMID 26635866 DOI: 10.3389/fgene.2015.00330  1
2015 Gal C, Murton HE, Subramanian L, Whale AJ, Moore KM, Paszkiewicz K, Codlin S, Bähler J, Creamer KM, Partridge JF, Allshire RC, Kent NA, Whitehall SK. Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation. Embo Reports. PMID 26582768 DOI: 10.15252/embr.201540476  1
2015 Rallis C, Bähler J. Cell-based screens and phenomics with fission yeast. Critical Reviews in Biochemistry and Molecular Biology. 1-10. PMID 26523839 DOI: 10.3109/10409238.2015.1103205  0.32
2015 Převorovský M, Oravcová M, Tvarůžková J, Zach R, Folk P, Půta F, Bähler J. Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles. Plos One. 10: e0137820. PMID 26366556 DOI: 10.1371/journal.pone.0137820  1
2015 Cotobal C, Rodríguez-López M, Duncan C, Hasan A, Yamashita A, Yamamoto M, Bähler J, Mata J. Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast. Epigenetics & Chromatin. 8: 28. PMID 26279681 DOI: 10.1186/s13072-015-0018-4  1
2015 Bitton DA, Atkinson SR, Rallis C, Smith GC, Ellis DA, Chen YY, Malecki M, Codlin S, Lemay JF, Cotobal C, Bachand F, Marguerat S, Mata J, Bähler J. Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast. Genome Research. 25: 884-96. PMID 25883323 DOI: 10.1101/gr.185371.114  1
2015 Lovell D, Pawlowsky-Glahn V, Egozcue JJ, Marguerat S, Bähler J. Proportionality: a valid alternative to correlation for relative data. Plos Computational Biology. 11: e1004075. PMID 25775355 DOI: 10.1371/journal.pcbi.1004075  0.76
2015 Jeffares DC, Rallis C, Rieux A, Speed D, P?evorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nature Genetics. 47: 235-41. PMID 25665008 DOI: 10.1038/ng.3215  1
2015 Chen JS, Beckley JR, McDonald NA, Ren L, Mangione M, Jang SJ, Elmore ZC, Rachfall N, Feoktistova A, Jones CM, Willet AH, Guillen R, Bitton DA, Bähler J, Jensen MA, et al. Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains. G3 (Bethesda, Md.). 5: 361-70. PMID 25552606 DOI: 10.1534/g3.114.015701  1
2015 McDowall MD, Harris MA, Lock A, Rutherford K, Staines DM, Bähler J, Kersey PJ, Oliver SG, Wood V. PomBase 2015: updates to the fission yeast database. Nucleic Acids Research. 43: D656-61. PMID 25361970 DOI: 10.1093/nar/gku1040  1
2015 Blake JA, Christie KR, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Burgess S, Buza T, Gresham C, McCarthy F, Pillai L, Wang H, Carbon S, Dietze H, ... ... Bahler J, et al. Gene Ontology Consortium: Going forward Nucleic Acids Research. 43: D1049-D1056. DOI: 10.1093/nar/gku1179  1
2014 Sideri T, Rallis C, Bitton DA, Lages BM, Suo F, Rodríguez-López M, Du LL, Bähler J. Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda, Md.). 5: 145-55. PMID 25452419 DOI: 10.1534/g3.114.014415  0.32
2014 Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, Rodríguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A. Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Molecular Systems Biology. 10: 764. PMID 25432776 DOI: 10.15252/msb.20145123  1
2014 Lemay JF, Larochelle M, Marguerat S, Atkinson S, Bähler J, Bachand F. The RNA exosome promotes transcription termination of backtracked RNA polymerase II. Nature Structural & Molecular Biology. 21: 919-26. PMID 25240800 DOI: 10.1038/nsmb.2893  1
2014 Sofola-Adesakin O, Castillo-Quan JI, Rallis C, Tain LS, Bjedov I, Rogers I, Li L, Martinez P, Khericha M, Cabecinha M, Bähler J, Partridge L. Lithium suppresses Aβ pathology by inhibiting translation in an adult Drosophila model of Alzheimer's disease. Frontiers in Aging Neuroscience. 6: 190. PMID 25126078 DOI: 10.3389/fnagi.2014.00190  1
2014 Kim JY, Kim EJ, Lopez-Maury L, Bähler J, Roe JH. A metabolic strategy to enhance long-term survival by Phx1 through stationary phase-specific pyruvate decarboxylases in fission yeast. Aging. 6: 587-601. PMID 25102102  0.8
2014 Lee IJ, Wang N, Hu W, Schott K, Bähler J, Giddings TH, Pringle JR, Du LL, Wu JQ. Regulation of spindle pole body assembly and cytokinesis by the centrin-binding protein Sfi1 in fission yeast. Molecular Biology of the Cell. 25: 2735-49. PMID 25031431 DOI: 10.1091/mbc.E13-11-0699  1
2014 Marguerat S, Lawler K, Brazma A, Bähler J. Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress. Rna Biology. 11: 702-14. PMID 25007214 DOI: 10.4161/rna.29196  1
2014 Zilio N, Codlin S, Vashisht AA, Bitton DA, Head SR, Wohlschlegel JA, Bähler J, Boddy MN. A novel histone deacetylase complex in the control of transcription and genome stability. Molecular and Cellular Biology. 34: 3500-14. PMID 25002536 DOI: 10.1128/MCB.00519-14  1
2014 Pai CC, Deegan RS, Subramanian L, Gal C, Sarkar S, Blaikley EJ, Walker C, Hulme L, Bernhard E, Codlin S, Bähler J, Allshire R, Whitehall S, Humphrey TC. A histone H3K36 chromatin switch coordinates DNA double-strand break repair pathway choice. Nature Communications. 5: 4091. PMID 24909977 DOI: 10.1038/ncomms5091  1
2014 Bitton DA, Rallis C, Jeffares DC, Smith GC, Chen YY, Codlin S, Marguerat S, Bähler J. LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq. Genome Research. 24: 1169-79. PMID 24709818 DOI: 10.1101/gr.166819.113  1
2014 Blaikley EJ, Tinline-Purvis H, Kasparek TR, Marguerat S, Sarkar S, Hulme L, Hussey S, Wee BY, Deegan RS, Walker CA, Pai CC, Bähler J, Nakagawa T, Humphrey TC. The DNA damage checkpoint pathway promotes extensive resection and nucleotide synthesis to facilitate homologous recombination repair and genome stability in fission yeast. Nucleic Acids Research. 42: 5644-56. PMID 24623809 DOI: 10.1093/nar/gku190  1
2014 Schwer B, Bitton DA, Sanchez AM, Bähler J, Shuman S. Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast. Proceedings of the National Academy of Sciences of the United States of America. 111: 4185-90. PMID 24591591 DOI: 10.1073/pnas.1321842111  1
2014 Rallis C, López-Maury L, Georgescu T, Pancaldi V, Bähler J. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Biology Open. 3: 161-71. PMID 24463365 DOI: 10.1242/bio.20147245  0.4
2013 Schlackow M, Marguerat S, Proudfoot NJ, Bähler J, Erban R, Gullerova M. Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe. Rna (New York, N.Y.). 19: 1617-31. PMID 24152550 DOI: 10.1261/rna.040675.113  0.6
2013 DeGennaro CM, Alver BH, Marguerat S, Stepanova E, Davis CP, Bähler J, Park PJ, Winston F. Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Molecular and Cellular Biology. 33: 4779-92. PMID 24100010 DOI: 10.1128/MCB.01068-13  1
2013 Livesay SB, Collier SE, Bitton DA, Bähler J, Ohi MD. Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. Eukaryotic Cell. 12: 1472-89. PMID 24014766 DOI: 10.1128/EC.00140-13  1
2013 Rallis C, Bähler J. Inhibition of TORC1 signaling and increased lifespan: gained in translation? Aging. 5: 335-6. PMID 23715437  0.32
2013 Harris MA, Lock A, Bähler J, Oliver SG, Wood V. FYPO: the fission yeast phenotype ontology. Bioinformatics (Oxford, England). 29: 1671-8. PMID 23658422 DOI: 10.1093/bioinformatics/btt266  1
2013 Rallis C, Codlin S, Bähler J. TORC1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast. Aging Cell. 12: 563-73. PMID 23551936 DOI: 10.1111/acel.12080  1
2013 Lehtinen S, Marsellach FX, Codlin S, Schmidt A, Clément-Ziza M, Beyer A, Bähler J, Orengo C, Pancaldi V. Stress induces remodelling of yeast interaction and co-expression networks. Molecular Biosystems. 9: 1697-707. PMID 23471351 DOI: 10.1039/c3mb25548d  1
2013 Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R. Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas. Molecular & Cellular Proteomics : McP. 12: 1741-51. PMID 23462206 DOI: 10.1074/mcp.M112.023754  1
2013 Valente LP, Dehé PM, Klutstein M, Aligianni S, Watt S, Bähler J, Cooper JP. Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast. The Embo Journal. 32: 450-60. PMID 23314747 DOI: 10.1038/emboj.2012.339  0.64
2012 Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, Bähler J. Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell. 151: 671-83. PMID 23101633 DOI: 10.1016/j.cell.2012.09.019  1
2012 Marguerat S, Bähler J. Coordinating genome expression with cell size. Trends in Genetics : Tig. 28: 560-5. PMID 22863032 DOI: 10.1016/j.tig.2012.07.003  0.76
2012 Saraç OS, Pancaldi V, Bähler J, Beyer A. Topology of functional networks predicts physical binding of proteins. Bioinformatics (Oxford, England). 28: 2137-45. PMID 22718785 DOI: 10.1093/bioinformatics/bts351  1
2012 Ioannoni R, Beaudoin J, Lopez-Maury L, Codlin S, Bahler J, Labbe S. Cuf2 is a novel meiosis-specific regulatory factor of meiosis maturation. Plos One. 7: e36338. PMID 22558440 DOI: 10.1371/journal.pone.0036338  1
2012 Pancaldi V, Saraç OS, Rallis C, McLean JR, P?evorovský M, Gould K, Beyer A, Bähler J. Predicting the fission yeast protein interaction network. G3 (Bethesda, Md.). 2: 453-67. PMID 22540037 DOI: 10.1534/g3.111.001560  1
2012 Lackner DH, Schmidt MW, Wu S, Wolf DA, Bähler J. Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast. Genome Biology. 13: R25. PMID 22512868 DOI: 10.1186/gb-2012-13-4-r25  1
2012 Atkinson SR, Marguerat S, Bähler J. Exploring long non-coding RNAs through sequencing. Seminars in Cell & Developmental Biology. 23: 200-5. PMID 22202731 DOI: 10.1016/j.semcdb.2011.12.003  0.76
2012 Wang Y, Kallgren SP, Reddy BD, Kuntz K, López-Maury L, Thompson J, Watt S, Ma C, Hou H, Shi Y, Yates JR, Bähler J, O'Connell MJ, Jia S. Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast. The Journal of Biological Chemistry. 287: 4386-93. PMID 22184112 DOI: 10.1074/jbc.M111.329417  1
2012 Cherkasova V, Maury LL, Bacikova D, Pridham K, Bähler J, Maraia RJ. Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p. Molecular Biology of the Cell. 23: 480-91. PMID 22160596 DOI: 10.1091/mbc.E11-08-0732  1
2012 Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, Aslett M, Lock A, Bähler J, Kersey PJ, Oliver SG. PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Research. 40: D695-9. PMID 22039153 DOI: 10.1093/nar/gkr853  1
2011 Lemieux C, Marguerat S, Lafontaine J, Barbezier N, Bähler J, Bachand F. A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein. Molecular Cell. 44: 108-19. PMID 21981922 DOI: 10.1016/j.molcel.2011.06.035  1
2011 Wilhelm BT, Marguerat S, Aligianni S, Codlin S, Watt S, Bähler J. Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast. Genome Biology. 12: R82. PMID 21859475 DOI: 10.1186/gb-2011-12-8-r82  1
2011 P?evorovský M, Atkinson SR, Ptá?ková M, McLean JR, Gould K, Folk P, P?ta F, Bähler J. N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast. Plos One. 6: e23650. PMID 21858190 DOI: 10.1371/journal.pone.0023650  1
2011 Kiely CM, Marguerat S, Garcia JF, Madhani HD, Bähler J, Winston F. Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe. Molecular and Cellular Biology. 31: 4193-204. PMID 21844224 DOI: 10.1128/MCB.05568-11  1
2011 Beaudoin J, Ioannoni R, López-Maury L, Bähler J, Ait-Mohand S, Guérin B, Dodani SC, Chang CJ, Labbé S. Mfc1 is a novel forespore membrane copper transporter in meiotic and sporulating cells. The Journal of Biological Chemistry. 286: 34356-72. PMID 21828039 DOI: 10.1074/jbc.M111.280396  1
2011 Helmlinger D, Marguerat S, Villén J, Swaney DL, Gygi SP, Bähler J, Winston F. Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex. The Embo Journal. 30: 2843-52. PMID 21642955 DOI: 10.1038/emboj.2011.181  1
2011 Guha S, López-Maury L, Shaw M, Bähler J, Norbury CJ, Agashe VR. Transcriptional and cellular responses to defective mitochondrial proteolysis in fission yeast. Journal of Molecular Biology. 408: 222-37. PMID 21354177 DOI: 10.1016/j.jmb.2011.02.044  1
2011 Reddy BD, Wang Y, Niu L, Higuchi EC, Marguerat SB, Bähler J, Smith GR, Jia S. Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions. Genes & Development. 25: 214-9. PMID 21289066 DOI: 10.1101/gad.1993611  0.8
2011 Hansen KR, Hazan I, Shanker S, Watt S, Verhein-Hansen J, Bähler J, Martienssen RA, Partridge JF, Cohen A, Thon G. H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases. Plos Genetics. 7: e1001268. PMID 21253571 DOI: 10.1371/journal.pgen.1001268  1
2011 Zaratiegui M, Vaughn MW, Irvine DV, Goto D, Watt S, Bähler J, Arcangioli B, Martienssen RA. CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature. 469: 112-5. PMID 21151105 DOI: 10.1038/nature09608  0.64
2010 Zhurinsky J, Leonhard K, Watt S, Marguerat S, Bähler J, Nurse P. A coordinated global control over cellular transcription. Current Biology : Cb. 20: 2010-5. PMID 20970341 DOI: 10.1016/j.cub.2010.10.002  1
2010 Nemoto N, Udagawa T, Ohira T, Jiang L, Hirota K, Wilkinson CR, Bähler J, Jones N, Ohta K, Wek RC, Asano K. The roles of stress-activated Sty1 and Gcn2 kinases and of the protooncoprotein homologue Int6/eIF3e in responses to endogenous oxidative stress during histidine starvation. Journal of Molecular Biology. 404: 183-201. PMID 20875427 DOI: 10.1016/j.jmb.2010.09.016  1
2010 Kiang L, Heichinger C, Watt S, Bähler J, Nurse P. Specific replication origins promote DNA amplification in fission yeast. Journal of Cell Science. 123: 3047-51. PMID 20736315 DOI: 10.1242/jcs.067470  1
2010 St-André O, Lemieux C, Perreault A, Lackner DH, Bähler J, Bachand F. Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast. The Journal of Biological Chemistry. 285: 27859-68. PMID 20622014 DOI: 10.1074/jbc.M110.150748  1
2010 Wen WL, Stevenson AL, Wang CY, Chen HJ, Kearsey SE, Norbury CJ, Watt S, Bähler J, Wang SW. Vgl1, a multi-KH domain protein, is a novel component of the fission yeast stress granules required for cell survival under thermal stress. Nucleic Acids Research. 38: 6555-66. PMID 20547592 DOI: 10.1093/nar/gkq555  1
2010 Kaufmann I, White E, Azad A, Marguerat S, Bähler J, Proudfoot NJ. Transcriptional activation of the general amino acid permease gene per1 by the histone deacetylase Clr6 Is regulated by Oca2 kinase. Molecular and Cellular Biology. 30: 3396-410. PMID 20404084 DOI: 10.1128/MCB.00971-09  1
2010 Wilhelm BT, Marguerat S, Goodhead I, Bähler J. Defining transcribed regions using RNA-seq. Nature Protocols. 5: 255-66. PMID 20134426 DOI: 10.1038/nprot.2009.229  1
2010 Lemay JF, D'Amours A, Lemieux C, Lackner DH, St-Sauveur VG, Bähler J, Bachand F. The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs. Molecular Cell. 37: 34-45. PMID 20129053 DOI: 10.1016/j.molcel.2009.12.019  1
2010 Onishi M, Koga T, Hirata A, Nakamura T, Asakawa H, Shimoda C, Bähler J, Wu JQ, Takegawa K, Tachikawa H, Pringle JR, Fukui Y. Role of septins in the orientation of forespore membrane extension during sporulation in fission yeast. Molecular and Cellular Biology. 30: 2057-74. PMID 20123972 DOI: 10.1128/MCB.01529-09  1
2010 Marguerat S, Bähler J. RNA-seq: from technology to biology. Cellular and Molecular Life Sciences : Cmls. 67: 569-79. PMID 19859660 DOI: 10.1007/s00018-009-0180-6  0.76
2009 Kim HS, Vanoosthuyse V, Fillingham J, Roguev A, Watt S, Kislinger T, Treyer A, Carpenter LR, Bennett CS, Emili A, Greenblatt JF, Hardwick KG, Krogan NJ, Bähler J, Keogh MC. An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Nature Structural & Molecular Biology. 16: 1286-93. PMID 19915592 DOI: 10.1038/nsmb.1688  1
2009 Tinline-Purvis H, Savory AP, Cullen JK, Davé A, Moss J, Bridge WL, Marguerat S, Bähler J, Ragoussis J, Mott R, Walker CA, Humphrey TC. Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast. The Embo Journal. 28: 3400-12. PMID 19798055 DOI: 10.1038/emboj.2009.265  1
2009 Aligianni S, Lackner DH, Klier S, Rustici G, Wilhelm BT, Marguerat S, Codlin S, Brazma A, de Bruin RA, Bähler J. The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback. Plos Genetics. 5: e1000626. PMID 19714215 DOI: 10.1371/journal.pgen.1000626  1
2009 Anderson HE, Wardle J, Korkut SV, Murton HE, López-Maury L, Bähler J, Whitehall SK. The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts. Molecular and Cellular Biology. 29: 5158-67. PMID 19620282 DOI: 10.1128/MCB.00698-09  1
2009 Bähler J. Global approaches to study gene regulation. Methods (San Diego, Calif.). 48: 217. PMID 19595390 DOI: 10.1016/j.ymeth.2009.06.006  0.8
2009 Schonbrun M, Laor D, López-Maury L, Bähler J, Kupiec M, Weisman R. TOR complex 2 controls gene silencing, telomere length maintenance, and survival under DNA-damaging conditions. Molecular and Cellular Biology. 29: 4584-94. PMID 19546237 DOI: 10.1128/MCB.01879-08  1
2009 Kiang L, Heichinger C, Watt S, Bähler J, Nurse P. Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast. Molecular and Cellular Biology. 29: 4025-32. PMID 19487461 DOI: 10.1128/MCB.00185-09  1
2008 Anders A, Watt S, Bähler J, Sawin KE. Improved tools for efficient mapping of fission yeast genes: identification of microtubule nucleation modifier mod22-1 as an allele of chromatin- remodelling factor gene swr1. Yeast (Chichester, England). 25: 913-25. PMID 19160458 DOI: 10.1002/yea.1639  1
2008 Lackner DH, Bähler J. Translational control of gene expression from transcripts to transcriptomes. International Review of Cell and Molecular Biology. 271: 199-251. PMID 19081544 DOI: 10.1016/S1937-6448(08)01205-7  1
2008 Helmlinger D, Marguerat S, Villén J, Gygi SP, Bähler J, Winston F. The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. Genes & Development. 22: 3184-95. PMID 19056896 DOI: 10.1101/gad.1719908  1
2008 Marguerat S, Wilhelm BT, Bähler J. Next-generation sequencing: applications beyond genomes. Biochemical Society Transactions. 36: 1091-6. PMID 18793195 DOI: 10.1042/BST0361091  1
2008 Monahan BJ, Villén J, Marguerat S, Bähler J, Gygi SP, Winston F. Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Nature Structural & Molecular Biology. 15: 873-80. PMID 18622392 DOI: 10.1038/nsmb.1452  1
2008 López-Maury L, Marguerat S, Bähler J. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nature Reviews. Genetics. 9: 583-93. PMID 18591982 DOI: 10.1038/nrg2398  0.8
2008 Jeffares DC, Penkett CJ, Bähler J. Rapidly regulated genes are intron poor. Trends in Genetics : Tig. 24: 375-8. PMID 18586348 DOI: 10.1016/j.tig.2008.05.006  0.8
2008 Udagawa T, Nemoto N, Wilkinson CR, Narashimhan J, Jiang L, Watt S, Zook A, Jones N, Wek RC, Bähler J, Asano K. Int6/eIF3e promotes general translation and Atf1 abundance to modulate Sty1 MAPK-dependent stress response in fission yeast. The Journal of Biological Chemistry. 283: 22063-75. PMID 18502752 DOI: 10.1074/jbc.M710017200  1
2008 Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature. 453: 1239-43. PMID 18488015 DOI: 10.1038/nature07002  1
2008 Ludin K, Mata J, Watt S, Lehmann E, Bähler J, Kohli J. Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres. Chromosoma. 117: 431-44. PMID 18449558 DOI: 10.1007/s00412-008-0159-3  1
2008 Reiter W, Watt S, Dawson K, Lawrence CL, Bähler J, Jones N, Wilkinson CR. Fission yeast MAP kinase Sty1 is recruited to stress-induced genes. The Journal of Biological Chemistry. 283: 9945-56. PMID 18252721 DOI: 10.1074/jbc.M710428200  0.8
2008 Mercier A, Watt S, Bähler J, Labbé S. Key function for the CCAAT-binding factor Php4 to regulate gene expression in response to iron deficiency in fission yeast. Eukaryotic Cell. 7: 493-508. PMID 18223116 DOI: 10.1128/EC.00446-07  0.8
2008 Dainty SJ, Kennedy CA, Watt S, Bähler J, Whitehall SK. Response of Schizosaccharomyces pombe to zinc deficiency. Eukaryotic Cell. 7: 454-64. PMID 18203864 DOI: 10.1128/EC.00408-07  0.8
2008 Watt S, Mata J, López-Maury L, Marguerat S, Burns G, Bähler J. urg1: a uracil-regulatable promoter system for fission yeast with short induction and repression times. Plos One. 3: e1428. PMID 18197241 DOI: 10.1371/journal.pone.0001428  1
2008 Wang SW, Stevenson AL, Kearsey SE, Watt S, Bähler J. Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing. Molecular and Cellular Biology. 28: 656-65. PMID 18025105 DOI: 10.1128/MCB.01531-07  1
2008 Chen D, Wilkinson CR, Watt S, Penkett CJ, Toone WM, Jones N, Bähler J. Multiple pathways differentially regulate global oxidative stress responses in fission yeast. Molecular Biology of the Cell. 19: 308-17. PMID 18003976 DOI: 10.1091/mbc.E07-08-0735  0.8
2008 Breitkreutz BJ, Stark C, Reguly T, Boucher L, Breitkreutz A, Livstone M, Oughtred R, Lackner DH, Bähler J, Wood V, Dolinski K, Tyers M. The BioGRID Interaction Database: 2008 update. Nucleic Acids Research. 36: D637-40. PMID 18000002 DOI: 10.1093/nar/gkm1001  1
2008 Miklos I, Szilagyi Z, Watt S, Zilahi E, Batta G, Antunovics Z, Enczi K, Bähler J, Sipiczki M. Genomic expression patterns in cell separation mutants of Schizosaccharomyces pombe defective in the genes sep10 ( + ) and sep15 ( + ) coding for the Mediator subunits Med31 and Med8. Molecular Genetics and Genomics : Mgg. 279: 225-38. PMID 17922236 DOI: 10.1007/s00438-007-0296-z  1
2007 Marguerat S, Wilhelm BT, Bähler J. Shaken not stirred: a global research cocktail served in Hinxton. Genome Biology. 8: 320. PMID 18036269 DOI: 10.1186/gb-2007-8-11-320  1
2007 Mata J, Wilbrey A, Bähler J. Transcriptional regulatory network for sexual differentiation in fission yeast. Genome Biology. 8: R217. PMID 17927811 DOI: 10.1186/gb-2007-8-10-r217  1
2007 Kirmizis A, Santos-Rosa H, Penkett CJ, Singer MA, Vermeulen M, Mann M, Bähler J, Green RD, Kouzarides T. Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation. Nature. 449: 928-32. PMID 17898715 DOI: 10.1038/nature06160  1
2007 Rustici G, van Bakel H, Lackner DH, Holstege FC, Wijmenga C, Bähler J, Brazma A. Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biology. 8: R73. PMID 17477863 DOI: 10.1186/gb-2007-8-5-r73  1
2007 Lackner DH, Beilharz TH, Marguerat S, Mata J, Watt S, Schubert F, Preiss T, Bähler J. A network of multiple regulatory layers shapes gene expression in fission yeast. Molecular Cell. 26: 145-55. PMID 17434133 DOI: 10.1016/j.molcel.2007.03.002  1
2007 Gordon M, Holt DG, Panigrahi A, Wilhelm BT, Erdjument-Bromage H, Tempst P, Bähler J, Cairns BR. Genome-wide dynamics of SAPHIRE, an essential complex for gene activation and chromatin boundaries. Molecular and Cellular Biology. 27: 4058-69. PMID 17371846 DOI: 10.1128/MCB.02044-06  1
2006 Penkett CJ, Birtle ZE, Bähler J. Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast. Yeast (Chichester, England). 23: 921-8. PMID 17072893 DOI: 10.1002/yea.1422  0.8
2006 Heichinger C, Penkett CJ, Bähler J, Nurse P. Genome-wide characterization of fission yeast DNA replication origins. The Embo Journal. 25: 5171-9. PMID 17053780 DOI: 10.1038/sj.emboj.7601390  1
2006 Mata J, Bähler J. Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast. Proceedings of the National Academy of Sciences of the United States of America. 103: 15517-22. PMID 17032641 DOI: 10.1073/pnas.0603403103  1
2006 Sharma N, Marguerat S, Mehta S, Watt S, Bähler J. The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation. Molecular Genetics and Genomics : Mgg. 276: 545-54. PMID 16972065 DOI: 10.1007/s00438-006-0161-5  0.8
2006 Rodríguez-Gabriel MA, Watt S, Bähler J, Russell P. Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast. Molecular and Cellular Biology. 26: 6347-56. PMID 16914721 DOI: 10.1128/MCB.00286-06  1
2006 Penkett CJ, Morris JA, Wood V, Bähler J. YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Research. 34: W330-4. PMID 16845020 DOI: 10.1093/nar/gkl311  0.8
2006 Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bähler J. The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast. Yeast (Chichester, England). 23: 261-77. PMID 16544289 DOI: 10.1002/yea.1351  1
2006 Bachand F, Lackner DH, Bähler J, Silver PA. Autoregulation of ribosome biosynthesis by a translational response in fission yeast. Molecular and Cellular Biology. 26: 1731-42. PMID 16478994 DOI: 10.1128/MCB.26.5.1731-1742.2006  1
2006 Martín V, Rodríguez-Gabriel MA, McDonald WH, Watt S, Yates JR, Bähler J, Russell P. Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress. Molecular Biology of the Cell. 17: 1176-83. PMID 16407405 DOI: 10.1091/mbc.E05-09-0847  1
2005 Bähler J. Cell-cycle control of gene expression in budding and fission yeast. Annual Review of Genetics. 39: 69-94. PMID 16285853 DOI: 10.1146/annurev.genet.39.110304.095808  0.8
2005 Jenkins CC, Mata J, Crane RF, Thomas B, Akoulitchev A, Bähler J, Norbury CJ. Activation of AP-1-dependent transcription by a truncated translation initiation factor. Eukaryotic Cell. 4: 1840-50. PMID 16278451 DOI: 10.1128/EC.4.11.1840-1850.2005  1
2005 Mata J, Marguerat S, Bähler J. Post-transcriptional control of gene expression: a genome-wide perspective. Trends in Biochemical Sciences. 30: 506-14. PMID 16054366 DOI: 10.1016/j.tibs.2005.07.005  1
2005 Bähler J, Svetina S. A logical circuit for the regulation of fission yeast growth modes. Journal of Theoretical Biology. 237: 210-8. PMID 15949817 DOI: 10.1016/j.jtbi.2005.04.008  1
2005 Lee KM, Miklos I, Du H, Watt S, Szilagyi Z, Saiz JE, Madabhushi R, Penkett CJ, Sipiczki M, Bähler J, Fisher RP. Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast. Molecular Biology of the Cell. 16: 2734-45. PMID 15829570 DOI: 10.1091/mbc.E04-11-0982  1
2005 Harrison C, Katayama S, Dhut S, Chen D, Jones N, Bähler J, Toda T. SCF(Pof1)-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast. The Embo Journal. 24: 599-610. PMID 15660136 DOI: 10.1038/sj.emboj.7600536  0.8
2005 Mandell JG, Bähler J, Volpe TA, Martienssen RA, Cech TR. Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biology. 6: R1. PMID 15642092 DOI: 10.1186/gb-2004-6-1-r1  1
2005 Hansen KR, Burns G, Mata J, Volpe TA, Martienssen RA, Bähler J, Thon G. Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Molecular and Cellular Biology. 25: 590-601. PMID 15632061 DOI: 10.1128/MCB.25.2.590-601.2005  1
2005 Bähler J. A transcriptional pathway for cell separation in fission yeast. Cell Cycle (Georgetown, Tex.). 4: 39-41. PMID 15611619  0.8
2005 Mandell JG, Goodrich KJ, Bähler J, Cech TR. Expression of a RecQ helicase homolog affects progression through crisis in fission yeast lacking telomerase. The Journal of Biological Chemistry. 280: 5249-57. PMID 15591066 DOI: 10.1074/jbc.M412756200  1
2004 Penkett CJ, Bähler J. Navigating public microarray databases. Comparative and Functional Genomics. 5: 471-9. PMID 18629145 DOI: 10.1002/cfg.427  0.64
2004 Sanders SL, Portoso M, Mata J, Bähler J, Allshire RC, Kouzarides T. Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell. 119: 603-14. PMID 15550243 DOI: 10.1016/j.cell.2004.11.009  1
2004 Gatti L, Chen D, Beretta GL, Rustici G, Carenini N, Corna E, Colangelo D, Zunino F, Bähler J, Perego P. Global gene expression of fission yeast in response to cisplatin. Cellular and Molecular Life Sciences : Cmls. 61: 2253-63. PMID 15338055 DOI: 10.1007/s00018-004-4218-5  0.8
2004 Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bähler J. Periodic gene expression program of the fission yeast cell cycle. Nature Genetics. 36: 809-17. PMID 15195092 DOI: 10.1038/ng1377  1
2004 Watson A, Mata J, Bähler J, Carr A, Humphrey T. Global gene expression responses of fission yeast to ionizing radiation. Molecular Biology of the Cell. 15: 851-60. PMID 14668484 DOI: 10.1091/mbc.E03-08-0569  1
2003 Rodríguez-Gabriel MA, Burns G, McDonald WH, Martín V, Yates JR, Bähler J, Russell P. RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. The Embo Journal. 22: 6256-66. PMID 14633985 DOI: 10.1093/emboj/cdg597  1
2003 Mata J, Bahler J. Correlations between gene expression and gene conservation in fission yeast. Genome Research. 13: 2686-90. PMID 14613978 DOI: 10.1101/gr.1420903  1
2003 Lyne R, Burns G, Mata J, Penkett CJ, Rustici G, Chen D, Langford C, Vetrie D, Bähler J. Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. Bmc Genomics. 4: 27. PMID 12854975 DOI: 10.1186/1471-2164-4-27  1
2003 Chen D, Toone WM, Mata J, Lyne R, Burns G, Kivinen K, Brazma A, Jones N, Bähler J. Global transcriptional responses of fission yeast to environmental stress. Molecular Biology of the Cell. 14: 214-29. PMID 12529438 DOI: 10.1091/mbc.E02-08-0499  1
2002 Mata J, Lyne R, Burns G, Bähler J. The transcriptional program of meiosis and sporulation in fission yeast. Nature Genetics. 32: 143-7. PMID 12161753 DOI: 10.1038/ng951  1
2002 Smith DA, Toone WM, Chen D, Bahler J, Jones N, Morgan BA, Quinn J. The Srk1 protein kinase is a target for the Sty1 stress-activated MAPK in fission yeast. The Journal of Biological Chemistry. 277: 33411-21. PMID 12080074 DOI: 10.1074/jbc.M204593200  1
2001 Molnar M, Bähler J, Kohli J, Hiraoka Y. Live observation of fission yeast meiosis in recombination-deficient mutants: a study on achiasmate chromosome segregation. Journal of Cell Science. 114: 2843-53. PMID 11683417  1
2001 Wu JQ, Bähler J, Pringle JR. Roles of a fimbrin and an alpha-actinin-like protein in fission yeast cell polarization and cytokinesis. Molecular Biology of the Cell. 12: 1061-77. PMID 11294907  1
2001 Bähler J, Nurse P. Fission yeast Pom1p kinase activity is cell cycle regulated and essential for cellular symmetry during growth and division. The Embo Journal. 20: 1064-73. PMID 11230130 DOI: 10.1093/emboj/20.5.1064  1
1998 Bähler J, Steever AB, Wheatley S, Wang Yl, Pringle JR, Gould KL, McCollum D. Role of polo kinase and Mid1p in determining the site of cell division in fission yeast. The Journal of Cell Biology. 143: 1603-16. PMID 9852154 DOI: 10.1083/jcb.143.6.1603  1
1998 Hartsuiker E, Bähler J, Kohli J. The role of topoisomerase II in meiotic chromosome condensation and segregation in Schizosaccharomyces pombe. Molecular Biology of the Cell. 9: 2739-50. PMID 9763441  0.8
1998 Bähler J, Wu JQ, Longtine MS, Shah NG, McKenzie A, Steever AB, Wach A, Philippsen P, Pringle JR. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast (Chichester, England). 14: 943-51. PMID 9717240 DOI: 10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y  1
1998 Bähler J, Pringle JR. Pom1p, a fission yeast protein kinase that provides positional information for both polarized growth and cytokinesis. Genes & Development. 12: 1356-70. PMID 9573052  1
1995 Molnar M, Bähler J, Sipiczki M, Kohli J. The rec8 gene of Schizosaccharomyces pombe is involved in linear element formation, chromosome pairing and sister-chromatid cohesion during meiosis. Genetics. 141: 61-73. PMID 8536990  1
1995 Svoboda A, Bähler J, Kohli J. Microtubule-driven nuclear movements and linear elements as meiosis-specific characteristics of the fission yeasts Schizosaccharomyces versatilis and Schizosaccharomyces pombe. Chromosoma. 104: 203-14. PMID 8529460  0.8
1995 Interthal H, Bellocq C, Bähler J, Bashkirov VI, Edelstein S, Heyer WD. A role of Sep1 (= Kem1, Xrn1) as a microtubule-associated protein in Saccharomyces cerevisiae. The Embo Journal. 14: 1057-66. PMID 7720696  1
1994 Kohli J, Bähler J. Homologous recombination in fission yeast: absence of crossover interference and synaptonemal complex. Experientia. 50: 295-306. PMID 8143803  0.8
1994 Bähler J, Hagens G, Holzinger G, Scherthan H, Heyer WD. Saccharomyces cerevisiae cells lacking the homologous pairing protein p175SEP1 arrest at pachytene during meiotic prophase. Chromosoma. 103: 129-41. PMID 8055710 DOI: 10.1007/BF00352322  1
1994 Scherthan H, Bähler J, Kohli J. Dynamics of chromosome organization and pairing during meiotic prophase in fission yeast. The Journal of Cell Biology. 127: 273-85. PMID 7929575  0.8
1994 Grimm C, Bähler J, Kohli J. M26 recombinational hotspot and physical conversion tract analysis in the ade6 gene of Schizosaccharomyces pombe. Genetics. 136: 41-51. PMID 7908005  1
1993 Bähler J, Wyler T, Loidl J, Kohli J. Unusual nuclear structures in meiotic prophase of fission yeast: a cytological analysis. The Journal of Cell Biology. 121: 241-56. PMID 8468345  0.8
1991 Bähler J, Schuchert P, Grimm C, Kohli J. Synchronized meiosis and recombination in fission yeast: observations with pat1-114 diploid cells. Current Genetics. 19: 445-51. PMID 1878997  0.8
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