Ahmet Yildiz - Publications

Affiliations: 
Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
Area:
Structural mechanism of molecular motors. High resolution imaging of subcellular structures

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Canty JT, Tan R, Kusakci E, Fernandes J, Yildiz A. Structure and Mechanics of Dynein Motors. Annual Review of Biophysics. 50: 549-574. PMID 33957056 DOI: 10.1146/annurev-biophys-111020-101511  0.369
2020 Ezber Y, Belyy V, Can S, Yildiz A. Dynein harnesses active fluctuations of microtubules for faster movement Nature Physics. 16: 312-316. PMID 33868446 DOI: 10.1038/S41567-019-0757-4  0.412
2020 Elshenawy MM, Kusakci E, Volz S, Baumbach J, Bullock SL, Yildiz A. Lis1 activates dynein motility by modulating its pairing with dynactin. Nature Cell Biology. PMID 32341547 DOI: 10.1038/S41556-020-0501-4  0.442
2020 Canty JT, Yildiz A. Activation and Regulation of Cytoplasmic Dynein. Trends in Biochemical Sciences. 45: 440-453. PMID 32311337 DOI: 10.1016/J.Tibs.2020.02.002  0.46
2019 Elshenawy MM, Canty JT, Oster L, Ferro LS, Zhou Z, Blanchard SC, Yildiz A. Cargo adaptors regulate stepping and force generation of mammalian dynein-dynactin. Nature Chemical Biology. PMID 31501589 DOI: 10.1038/S41589-019-0352-0  0.477
2019 Ferro LS, Can S, Turner MA, ElShenawy MM, Yildiz A. Kinesin and dynein use distinct mechanisms to bypass obstacles. Elife. 8. PMID 31498080 DOI: 10.7554/Elife.48629  0.466
2019 Can S, Lacey S, Gur M, Carter AP, Yildiz A. Directionality of dynein is controlled by the angle and length of its stalk. Nature. PMID 30728497 DOI: 10.1038/S41586-019-0914-Z  0.474
2019 Yildiz A, Hancock WO. Decision letter: Neck linker docking is critical for Kinesin-1 force generation in cells but at a cost to motor speed and processivity Elife. DOI: 10.7554/Elife.44146.028  0.385
2018 Wichner SM, Yildiz A. Multicolor Tracking of Molecular Motors at Nanometer Resolution. Methods in Molecular Biology (Clifton, N.J.). 1805: 139-149. PMID 29971717 DOI: 10.1007/978-1-4939-8556-2_8  0.449
2018 Fu G, Bandaria JN, Le Gall AV, Fan X, Yildiz A, Mignot T, Zusman DR, Nan B. MotAB-like machinery drives the movement of MreB filaments during bacterial gliding motility. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463706 DOI: 10.1073/Pnas.1716441115  0.425
2018 Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP. Cryo-EM shows how dynactin recruits two dyneins for faster movement. Nature. 554: 202-206. PMID 29420470 DOI: 10.1038/Nature25462  0.469
2017 Chien A, Shih SM, Bower R, Tritschler D, Porter ME, Yildiz A. Dynamics of the IFT machinery at the ciliary tip. Elife. 6. PMID 28930071 DOI: 10.7554/Elife.28606  0.301
2017 Wichner SM, Mann VR, Powers AS, Segal MA, Mir M, Bandaria JN, DeWitt MA, Darzacq X, Yildiz A, Cohen BE. Covalent Protein Labeling and Improved Single Molecule Optical Properties of Aqueous CdSe/CdS Quantum Dots. Acs Nano. PMID 28618223 DOI: 10.1021/Acsnano.7B01470  0.305
2017 Belyy V, Shih SM, Bandaria J, Huang Y, Lawrence RE, Zoncu R, Yildiz A. PhotoGate microscopy to track single molecules in crowded environments. Nature Communications. 8: 13978. PMID 28071667 DOI: 10.1038/Ncomms13978  0.307
2017 Can S, Yildiz A. Measurement of Force-Dependent Release Rates of Cytoskeletal Motors. Methods in Molecular Biology (Clifton, N.J.). 1486: 469-481. PMID 27844440 DOI: 10.1007/978-1-4939-6421-5_18  0.437
2016 Belyy V, Schlager MA, Foster H, Reimer AE, Carter AP, Yildiz A. The mammalian dynein-dynactin complex is a strong opponent to kinesin in a tug-of-war competition. Nature Cell Biology. PMID 27454819 DOI: 10.1038/Ncb3393  0.473
2016 Yildiz A. PhotoGate microscopy: tracking single molecules in a cytoplasm(Conference Presentation) Proceedings of Spie. 9714: 971409. DOI: 10.1117/12.2209394  0.303
2016 Belyy V, Schlager MA, Reimer AE, Carter AP, Yildiz A. Single-Molecule Insight into the Activation of Human Dynein by Adapter Proteins Biophysical Journal. 110: 7a. DOI: 10.1016/J.Bpj.2015.11.088  0.449
2015 Wu RA, Dagdas YS, Yilmaz ST, Yildiz A, Collins K. Single-molecule imaging of telomerase reverse transcriptase in human telomerase holoenzyme and minimal RNP complexes. Elife. 4. PMID 26457608 DOI: 10.7554/Elife.08363  0.32
2015 Yildiz A, Vale RD. Total Internal Reflection Fluorescence Microscopy. Cold Spring Harbor Protocols. 2015: pdb.top086348. PMID 26330632 DOI: 10.1101/Pdb.Top086348  0.303
2015 Yildiz A, Vale RD. Tracking Movements of the Microtubule Motors Kinesin and Dynein Using Total Internal Reflection Fluorescence Microscopy. Cold Spring Harbor Protocols. 2015: pdb.prot086355. PMID 26330626 DOI: 10.1101/Pdb.Prot086355  0.419
2015 Dogan MY, Can S, Cleary FB, Purde V, Yildiz A. Kinesin's front head is gated by the backward orientation of its neck linker. Cell Reports. 10: 1967-73. PMID 25818289 DOI: 10.1016/J.Bpj.2015.11.2456  0.422
2015 Nan B, Bandaria JN, Guo KY, Fan X, Moghtaderi A, Yildiz A, Zusman DR. The polarity of myxobacterial gliding is regulated by direct interactions between the gliding motors and the Ras homolog MglA. Proceedings of the National Academy of Sciences of the United States of America. 112: E186-93. PMID 25550521 DOI: 10.1073/Pnas.1421073112  0.407
2015 DeWitt MA, Cypranowska CA, Cleary FB, Belyy V, Yildiz A. The AAA3 domain of cytoplasmic dynein acts as a switch to facilitate microtubule release. Nature Structural & Molecular Biology. 22: 73-80. PMID 25486306 DOI: 10.1038/Nsmb.2930  0.362
2014 Belyy V, Hendel NL, Chien A, Yildiz A. Cytoplasmic dynein transports cargos via load-sharing between the heads. Nature Communications. 5: 5544. PMID 25424027 DOI: 10.1038/Ncomms6544  0.394
2014 Cleary FB, Dewitt MA, Bilyard T, Htet ZM, Belyy V, Chan DD, Chang AY, Yildiz A. Tension on the linker gates the ATP-dependent release of dynein from microtubules. Nature Communications. 5: 4587. PMID 25109325 DOI: 10.1038/Ncomms5587  0.443
2014 DeWitt M, Schenkel T, Yildiz A. Fluorescence tracking of motor proteins in vitro. Exs. 105: 211-34. PMID 25095997 DOI: 10.1007/978-3-0348-0856-9_10  0.469
2014 Can S, Dewitt MA, Yildiz A. Bidirectional helical motility of cytoplasmic dynein around microtubules. Elife. 3: e03205. PMID 25069614 DOI: 10.7554/Elife.03205  0.469
2014 Belyy V, Yildiz A. Processive cytoskeletal motors studied with single-molecule fluorescence techniques. Febs Letters. 588: 3520-5. PMID 24882363 DOI: 10.1016/J.Febslet.2014.05.040  0.461
2014 Can S, Dewitt MA, Yildiz A. Author response: Bidirectional helical motility of cytoplasmic dynein around microtubules Elife. DOI: 10.7554/Elife.03205.021  0.327
2014 DeWitt M, Segura C, Lawrence R, Yildiz A. Single-Molecule Study of the Communication between the Two Primary Sites of Cytoplasmic Dynein Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2004  0.424
2014 Cleary FB, Schmidt H, Htet ZM, Bilyard T, Carter AP, Yildiz A. The Mechanism of Dynein's Minus End Directionality and an Engineered Plus End Directed Dynein Motor Biophysical Journal. 106: 352a. DOI: 10.1016/J.Bpj.2013.11.2003  0.451
2014 Belyy V, Hendel NL, Yildiz A. Load-Sharing Mechanism of Cytoplasmic Dynein Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2002  0.398
2013 Shih SM, Engel BD, Kocabas F, Bilyard T, Gennerich A, Marshall WF, Yildiz A. Intraflagellar transport drives flagellar surface motility. Elife. 2: e00744. PMID 23795295 DOI: 10.7554/Elife.00744  0.4
2013 Nan B, Bandaria JN, Moghtaderi A, Sun IH, Yildiz A, Zusman DR. Flagella stator homologs function as motors for myxobacterial gliding motility by moving in helical trajectories. Proceedings of the National Academy of Sciences of the United States of America. 110: E1508-13. PMID 23576734 DOI: 10.1073/Pnas.1219982110  0.389
2013 Shih S, Yildiz A. Single-Molecule Observation of IFT Turnover using a Photobleaching Gate Biophysical Journal. 104: 1-5. DOI: 10.1016/J.Bpj.2012.11.985  0.345
2013 Cleary FB, Bilyard T, Chan DD, Belyy V, Chang AY, Yildiz A. A Force Dependent Gating Mechanism Inhibits ATP Dependent Release of Dynein from Microtubules Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2134  0.434
2013 Selvin PR, Blehm BH, Tonks-Hoffman M, Trybus KM, Schroer TA, Berger CL, Yildiz A, Chemla YR. Single Molecule Fluorescence and Optical Traps Applied to Molecular Motors: Two can do it better than One Biophysical Journal. 104: 185a. DOI: 10.1016/J.Bpj.2012.11.1043  0.471
2013 Yildiz A. The Mechanism of Cytoplasmic Dynein Motility Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.038  0.445
2012 DeWitt MA, Chang AY, Combs PA, Yildiz A. Cytoplasmic dynein moves through uncoordinated stepping of the AAA+ ring domains. Science (New York, N.Y.). 335: 221-5. PMID 22157083 DOI: 10.1126/Science.1215804  0.417
2012 Cleary FB, Bilyard T, Chan DD, Yildiz A. Engineered Dynein Mutants Reveal Minimal Structural and Catalytic Requirements for Processive Motility Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.235  0.453
2012 Shih S, Bilyard T, Engel BD, Marshall WF, Yildiz A. Intraflagellar Transport Powers Flagellar Surface Motility in Chlamydomonas Biophysical Journal. 102: 379a. DOI: 10.1016/J.Bpj.2011.11.2073  0.43
2012 Yildiz A. The Mechanism of Cytoplasmic Dynein Processivity Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2029  0.439
2011 Dean Z, Duboc P, Yildiz A. Superresolution Studies to Reveal the Interactions between Motor Proteins and Individual Cargos in Chlamydomonas Flagella Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.3464  0.449
2011 DeWitt MA, Combs P, Cohen B, Yildiz A. Detailed Analysis of the Dynein Stepping Mechanism using Multicolor Tracking Biophysical Journal. 100: 529a. DOI: 10.1016/J.Bpj.2010.12.3092  0.425
2011 Shih S, Kocabas F, Yildiz A. Single-Molecule Analysis of Intraflagellar Transport in Live Chlamydomonas Cells Biophysical Journal. 100: 11a. DOI: 10.1016/J.Bpj.2010.12.269  0.481
2010 Yildiz A, Shih S, Kocabas F. High Precision Tracking of Intracellular Transport with Fluorescent Nanoparticles Biophysical Journal. 98: 203a. DOI: 10.1016/J.Bpj.2009.12.1084  0.399
2009 Toprak E, Yildiz A, Hoffman MT, Rosenfeld SS, Selvin PR. Why kinesin is so processive. Proceedings of the National Academy of Sciences of the United States of America. 106: 12717-22. PMID 19617538 DOI: 10.1073/Pnas.0808396106  0.454
2008 Yildiz A, Tomishige M, Gennerich A, Vale RD. Intramolecular strain coordinates kinesin stepping behavior along microtubules. Cell. 134: 1030-41. PMID 18805095 DOI: 10.1016/J.Cell.2008.07.018  0.453
2006 Milescu LS, Yildiz A, Selvin PR, Sachs F. Extracting dwell time sequences from processive molecular motor data. Biophysical Journal. 91: 3135-50. PMID 16905607 DOI: 10.1529/Biophysj.105.079517  0.387
2006 Reck-Peterson SL, Yildiz A, Carter AP, Gennerich A, Zhang N, Vale RD. Single-molecule analysis of dynein processivity and stepping behavior. Cell. 126: 335-48. PMID 16873064 DOI: 10.1016/J.Cell.2006.05.046  0.464
2006 Milescu LS, Yildiz A, Selvin PR, Sachs F. Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences. Biophysical Journal. 91: 1156-68. PMID 16679362 DOI: 10.1529/Biophysj.105.079541  0.405
2006 Yildiz A. GE Prize winner. How molecular motors move. Science (New York, N.Y.). 311: 792-3. PMID 16469911 DOI: 10.1126/Science.1125068  0.395
2006 Yildiz A. How Molecular Motors Move Science. 311: 792-793. DOI: 10.1126/Science.1125068A  0.353
2005 Yildiz A, Selvin PR. Fluorescence imaging with one nanometer accuracy: application to molecular motors. Accounts of Chemical Research. 38: 574-82. PMID 16028892 DOI: 10.1021/Ar040136S  0.372
2005 Yildiz A, Selvin PR. Kinesin: walking, crawling or sliding along? Trends in Cell Biology. 15: 112-20. PMID 15695098 DOI: 10.1016/J.Tcb.2004.12.007  0.443
2004 Yildiz A, Park H, Safer D, Yang Z, Chen LQ, Selvin PR, Sweeney HL. Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin. The Journal of Biological Chemistry. 279: 37223-6. PMID 15254036 DOI: 10.1074/Jbc.C400252200  0.469
2004 Yildiz A, Tomishige M, Vale RD, Selvin PR. Kinesin walks hand-over-hand. Science (New York, N.Y.). 303: 676-8. PMID 14684828 DOI: 10.1126/Science.1093753  0.402
2003 Yildiz A, Forkey JN, McKinney SA, Ha T, Goldman YE, Selvin PR. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science (New York, N.Y.). 300: 2061-5. PMID 12791999 DOI: 10.1126/Science.1084398  0.371
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