| Year |
Citation |
Score |
| 2023 |
Dou J, Tan Y, Kock KH, Wang J, Cheng X, Tan LM, Han KY, Hon CC, Park WY, Shin JW, Jin H, Wang Y, Chen H, Ding L, Prabhakar S, ... Navin N, et al. Single-nucleotide variant calling in single-cell sequencing data with Monopogen. Nature Biotechnology. PMID 37592035 DOI: 10.1038/s41587-023-01873-x |
0.315 |
|
| 2023 |
Wang K, Kumar T, Wang J, Minussi DC, Sei E, Li J, Tran TM, Thennavan A, Hu M, Casasent AK, Xiao Z, Bai S, Yang L, King LM, Shah V, ... ... Navin NE, et al. Archival single-cell genomics reveals persistent subclones during DCIS progression. Cell. PMID 37586362 DOI: 10.1016/j.cell.2023.07.024 |
0.444 |
|
| 2023 |
Kumar T, Nee K, Wei R, He S, Nguyen QH, Bai S, Blake K, Pein M, Gong Y, Sei E, Hu M, Casasent AK, Thennavan A, Li J, Tran T, ... ... Navin N, et al. A spatially resolved single-cell genomic atlas of the adult human breast. Nature. PMID 37380767 DOI: 10.1038/s41586-023-06252-9 |
0.315 |
|
| 2023 |
Truong DD, Lamhamedi-Cherradi SE, Porter RW, Krishnan S, Swaminathan J, Gibson A, Lazar AJ, Livingston JA, Gopalakrishnan V, Gordon N, Daw NC, Navin NE, Gorlick R, Ludwig JA. Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing. Bmc Cancer. 23: 488. PMID 37254069 DOI: 10.1186/s12885-023-10977-1 |
0.378 |
|
| 2023 |
Kumar T, Nee K, Wei R, He S, Nguyen QH, Bai S, Blake K, Gong Y, Pein M, Sei E, Hu M, Casasent A, Thennavan A, Li J, Tran T, ... ... Navin N, et al. A spatially resolved single cell genomic atlas of the adult human breast. Biorxiv : the Preprint Server For Biology. PMID 37163043 DOI: 10.1101/2023.04.22.537946 |
0.313 |
|
| 2023 |
Lu L, Wang JR, Henderson YC, Bai S, Yang J, Hu M, Shiau CK, Pan TY, Yan Y, Tran TM, Li J, Kieser R, Zhao X, Wang J, Nurieva R, ... ... Navin N, et al. Anaplastic transformation in thyroid cancer revealed by single cell transcriptomics. The Journal of Clinical Investigation. PMID 37053016 DOI: 10.1172/JCI169653 |
0.327 |
|
| 2022 |
Leighton J, Hu M, Sei E, Meric-Bernstam F, Navin NE. Reconstructing mutational lineages in breast cancer by multi-patient-targeted single-cell DNA sequencing. Cell Genomics. 3: 100215. PMID 36777188 DOI: 10.1016/j.xgen.2022.100215 |
0.426 |
|
| 2022 |
Wu HJ, Temko D, Maliga Z, Moreira AL, Sei E, Minussi DC, Dean J, Lee C, Xu Q, Hochart G, Jacobson CA, Yapp C, Schapiro D, Sorger PK, Seeley EH, ... Navin N, et al. Spatial intra-tumor heterogeneity is associated with survival of lung adenocarcinoma patients. Cell Genomics. 2. PMID 36419822 DOI: 10.1016/j.xgen.2022.100165 |
0.331 |
|
| 2022 |
Kaufmann TL, Petkovic M, Watkins TBK, Colliver EC, Laskina S, Thapa N, Minussi DC, Navin N, Swanton C, Van Loo P, Haase K, Tarabichi M, Schwarz RF. MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution. Genome Biology. 23: 241. PMID 36376909 DOI: 10.1186/s13059-022-02794-9 |
0.39 |
|
| 2022 |
Schalck A, Sakellariou-Thompson D, Forget MA, Sei E, Hughes TG, Reuben A, Bai S, Hu M, Kumar T, Hurd MW, Katz MHG, Tzeng CD, Pant S, Javle M, Fogelman DR, ... ... Navin NE, et al. Single cell sequencing reveals trajectory of tumor-infiltrating lymphocyte states in pancreatic cancer. Cancer Discovery. PMID 35849783 DOI: 10.1158/2159-8290.CD-21-1248 |
0.306 |
|
| 2022 |
Lips EH, Kumar T, Megalios A, Visser LL, Sheinman M, Fortunato A, Shah V, Hoogstraat M, Sei E, Mallo D, Roman-Escorza M, Ahmed AA, Xu M, van den Belt-Dusebout AW, Brugman W, ... ... Navin NE, et al. Genomic analysis defines clonal relationships of ductal carcinoma in situ and recurrent invasive breast cancer. Nature Genetics. 54: 850-860. PMID 35681052 DOI: 10.1038/s41588-022-01082-3 |
0.41 |
|
| 2021 |
Minussi DC, Nicholson MD, Ye H, Davis A, Wang K, Baker T, Tarabichi M, Sei E, Du H, Rabbani M, Peng C, Hu M, Bai S, Lin YW, Schalck A, ... ... Navin NE, et al. Breast tumours maintain a reservoir of subclonal diversity during expansion. Nature. PMID 33762732 DOI: 10.1038/s41586-021-03357-x |
0.395 |
|
| 2021 |
Wang F, Wang Q, Mohanty V, Liang S, Dou J, Han J, Minussi DC, Gao R, Ding L, Navin N, Chen K. MEDALT: single-cell copy number lineage tracing enabling gene discovery. Genome Biology. 22: 70. PMID 33622385 DOI: 10.1186/s13059-021-02291-5 |
0.366 |
|
| 2021 |
Gao R, Bai S, Henderson YC, Lin Y, Schalck A, Yan Y, Kumar T, Hu M, Sei E, Davis A, Wang F, Shaitelman SF, Wang JR, Chen K, Moulder S, ... ... Navin NE, et al. Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes. Nature Biotechnology. PMID 33462507 DOI: 10.1038/s41587-020-00795-2 |
0.505 |
|
| 2020 |
Naffar-Abu Amara S, Kuiken HJ, Selfors LM, Butler T, Leung ML, Leung CT, Kuhn EP, Kolarova T, Hage C, Ganesh K, Panayiotou R, Foster R, Rueda BR, Aktipis A, Spellman P, ... ... Navin N, et al. Transient commensal clonal interactions can drive tumor metastasis. Nature Communications. 11: 5799. PMID 33199705 DOI: 10.1038/s41467-020-19584-1 |
0.316 |
|
| 2020 |
Morita K, Wang F, Jahn K, Hu T, Tanaka T, Sasaki Y, Kuipers J, Loghavi S, Wang SA, Yan Y, Furudate K, Matthews J, Little L, Gumbs C, Zhang J, ... ... Navin N, et al. Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics. Nature Communications. 11: 5327. PMID 33087716 DOI: 10.1038/s41467-020-19119-8 |
0.382 |
|
| 2020 |
Mallory XF, Edrisi M, Navin N, Nakhleh L. Methods for copy number aberration detection from single-cell DNA-sequencing data. Genome Biology. 21: 208. PMID 32807205 DOI: 10.1186/S13059-020-02119-8 |
0.413 |
|
| 2020 |
Mallory XF, Edrisi M, Navin N, Nakhleh L. Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data. Plos Computational Biology. 16: e1008012. PMID 32658894 DOI: 10.1371/Journal.Pcbi.1008012 |
0.462 |
|
| 2020 |
Ramesh N, Sei E, Tsai PC, Bai S, Zhao Y, Troncoso P, Corn PG, Logothetis C, Zurita AJ, Navin NE. Decoding the evolutionary response to prostate cancer therapy by plasma genome sequencing. Genome Biology. 21: 162. PMID 32631448 DOI: 10.1186/S13059-020-02045-9 |
0.4 |
|
| 2020 |
Manzo T, Prentice BM, Anderson KG, Raman A, Schalck A, Codreanu GS, Nava Lauson CB, Tiberti S, Raimondi A, Jones MA, Reyzer M, Bates BM, Spraggins JM, Patterson NH, McLean JA, ... ... Navin NE, et al. Accumulation of long-chain fatty acids in the tumor microenvironment drives dysfunction in intrapancreatic CD8+ T cells. The Journal of Experimental Medicine. 217. PMID 32491160 DOI: 10.1084/Jem.20191920 |
0.337 |
|
| 2020 |
Malihi PD, Graf RP, Rodriguez A, Ramesh N, Lee J, Sutton R, Jiles R, Ruiz Velasco C, Sei E, Kolatkar A, Logothetis C, Navin NE, Corn P, Aparicio AM, Dittamore R, et al. Single-cell circulating tumor cell analysis reveals genomic instability as a distinctive feature of aggressive prostate cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32341031 DOI: 10.1158/1078-0432.Ccr-19-4100 |
0.492 |
|
| 2020 |
Mitra A, Andrews MC, Roh W, De Macedo MP, Hudgens CW, Carapeto F, Singh S, Reuben A, Wang F, Mao X, Song X, Wani K, Tippen S, Ng KS, Schalck A, ... ... Navin N, et al. Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma. Nature Communications. 11: 1839. PMID 32296058 DOI: 10.1038/S41467-020-15538-9 |
0.458 |
|
| 2020 |
Lim B, Lin Y, Navin N. Advancing Cancer Research and Medicine with Single-Cell Genomics. Cancer Cell. 37: 456-470. PMID 32289270 DOI: 10.1016/J.Ccell.2020.03.008 |
0.457 |
|
| 2020 |
Oikawa M, Enomoto Y, Hisamatsu K, Hamada T, Otsubo R, Yano H, Nagayasu T, Mishima H, Yoshiura K, Navin N. Abstract P5-01-17: Unbiased copy number analysis of circulating tumor DNA among HER2-positive breast cancer patients Cancer Research. 80. DOI: 10.1158/1538-7445.Sabcs19-P5-01-17 |
0.513 |
|
| 2020 |
Mastoraki S, Navarro-Yepes J, Tran T, Sahin A, Hunt K, Navin N, Keyomarsi K. Abstract P4-06-03: Assessment of intratumoral heterogeneity in early stage estrogen receptor (ER) positive breast cancer Cancer Research. 80. DOI: 10.1158/1538-7445.Sabcs19-P4-06-03 |
0.517 |
|
| 2020 |
Kumar T, Nguyen Q, Nee K, Bai S, Hu M, Sei E, Wood A, Wiley J, Chen H, Contreras A, Teshome M, Chen K, Lim B, Lawson D, Navin N, et al. Abstract 5702: A spatially resolved single cell atlas of the human breast Tumor Biology. DOI: 10.1158/1538-7445.Am2020-5702 |
0.35 |
|
| 2019 |
Davis A, Gao R, Navin NE. SCOPIT: sample size calculations for single-cell sequencing experiments. Bmc Bioinformatics. 20: 566. PMID 31718533 DOI: 10.1186/S12859-019-3167-9 |
0.43 |
|
| 2019 |
Wang F, Liang S, Kumar T, Navin N, Chen K. SCMarker: Ab initio marker selection for single cell transcriptome profiling. Plos Computational Biology. 15: e1007445. PMID 31658262 DOI: 10.1371/Journal.Pcbi.1007445 |
0.369 |
|
| 2019 |
Zafar H, Navin N, Chen K, Nakhleh L. SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data. Genome Research. PMID 31628257 DOI: 10.1101/Gr.243121.118 |
0.481 |
|
| 2019 |
Corn PG, Heath EI, Zurita A, Ramesh N, Xiao L, Sei E, Li-Ning-Tapia E, Tu SM, Subudhi SK, Wang J, Wang X, Efstathiou E, Thompson TC, Troncoso P, Navin N, et al. Cabazitaxel plus carboplatin for the treatment of men with metastatic castration-resistant prostate cancers: a randomised, open-label, phase 1-2 trial. The Lancet. Oncology. PMID 31515154 DOI: 10.1016/S1470-2045(19)30408-5 |
0.301 |
|
| 2019 |
Zafar H, Tzen A, Navin N, Chen K, Nakhleh L. Comments on the model parameters in "SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models". Genome Biology. 20: 95. PMID 31096998 DOI: 10.1186/S13059-019-1692-5 |
0.404 |
|
| 2019 |
Aparicio A, Zhang M, Ramesh N, Wang X, Corn PG, Zurita AJ, Davis JW, Pettaway CA, Adibi M, Mcguire SE, Tu S, Wang J, Subudhi SK, Elsheshtawi MA, Efstathiou E, ... ... Navin N, et al. Aggressive variant prostate cancer (AVPC) molecular signature in castration-sensitive, de novo metastatic prostate cancer (M1PCa). Journal of Clinical Oncology. 37: 5052-5052. DOI: 10.1200/Jco.2019.37.15_Suppl.5052 |
0.359 |
|
| 2019 |
Issa GC, Benton CB, Mohanty V, Shen Y, Alaniz Z, Wang F, Futreal PA, Wang W, Jorgensen JL, Navin N, Konopleva MY, Chen K, Andreeff M. Identification of Gene Expression Signatures in Leukemia Stem Cells and Minimal Residual Disease Following Treatment of Adverse Risk Acute Myeloid Leukemia Blood. 134: 2717-2717. DOI: 10.1182/Blood-2019-130540 |
0.385 |
|
| 2019 |
Navin N. Abstract PL1: Breast Tumor Evolution and Intratumor Heterogeneity - Insights from Single Cell Genomics Cancer Research. 79. DOI: 10.1158/1538-7445.Sabcs18-Pl1 |
0.539 |
|
| 2019 |
Seth T, Bai S, Hu M, Sei E, Wood A, Wiley J, Chen H, Contreras A, Teshome M, Lim B, Navin N. Abstract GS1-02: Towards a human breast cell atlas Cancer Research. 79. DOI: 10.1158/1538-7445.Sabcs18-Gs1-02 |
0.445 |
|
| 2019 |
Ramesh N, Sei E, Tsai PC, Logothetis C, Corn P, Aparicio A, Zurita AJ, Navin NE. Abstract 446: Plasma genome sequencing identifies prostate cancer patients that are sensitive to platinum-based therapy Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-446 |
0.39 |
|
| 2019 |
Mitra A, Andrews MC, Roh W, Macedo MPd, Reuben A, Carapeto F, Wang F, Reddy SM, Wani K, Spencer C, Miller J, Schalck A, Little LD, Sakellariou-Thompson DA, Gumbs C, ... ... Navin N, et al. Abstract 3776: Spatially resolved immunogenomic analyses reveal diverse sub tumoral microenvironments in the context of melanoma immunotherapy Cancer Research. 79: 3776-3776. DOI: 10.1158/1538-7445.Sabcs18-3776 |
0.462 |
|
| 2019 |
Hughes T, Li X, Dai B, Deng J, Siangco C, Das K, Bai S, Hu M, Sei E, Seth T, Navin N, Kim M. Abstract 2738: Wnt11 regulates migration and invasion in pancreatic ductal adenocarcinoma Cancer Research. 79: 2738-2738. DOI: 10.1158/1538-7445.Sabcs18-2738 |
0.447 |
|
| 2019 |
Gao R, Navin N. Abstract 2477: CopyCat: estimating genomic copy number profiles from high-throughput single cell RNA seq data Cancer Research. 79: 2477-2477. DOI: 10.1158/1538-7445.Am2019-2477 |
0.511 |
|
| 2019 |
Hughes T, Li X, Dai B, Siangco C, Das K, Bai S, Min H, Kumar T, Sei E, Navin N, Kim MP. 727 – Wnt11 Promotes Pancreatic Cancer Cell Motility and Invasion Gastroenterology. 156. DOI: 10.1016/S0016-5085(19)40561-1 |
0.371 |
|
| 2019 |
Morita K, Wang F, Jahn K, Kuipers J, Yan Y, Matthews J, Little L, Gumbs C, Chen S, Zhang J, Song X, Thompson E, Patel K, Bueso-Ramos C, DiNardo C, ... ... Navin N, et al. Deconvolution of Clonal Heterogeneity in Acute Myeloid Leukemia using Single-Cell DNA Sequencing Clinical Lymphoma Myeloma and Leukemia. 19: S234. DOI: 10.1016/J.Clml.2019.07.121 |
0.369 |
|
| 2018 |
Zhang Y, Xiong S, Liu B, Pant V, Celii F, Chau G, Elizondo-Fraire AC, Yang P, You MJ, El-Naggar AK, Navin NE, Lozano G. Somatic Trp53 mutations differentially drive breast cancer and evolution of metastases. Nature Communications. 9: 3953. PMID 30262850 DOI: 10.1038/S41467-018-06146-9 |
0.466 |
|
| 2018 |
Schalck A, Bernatchez C, Navin N. Resident Breast T Cells: The Troops Are Already There Trends in Molecular Medicine. 24: 821-822. PMID 30077643 DOI: 10.1016/J.Molmed.2018.07.006 |
0.424 |
|
| 2018 |
Kim C, Gao R, Sei E, Brandt R, Hartman J, Hatschek T, Crosetto N, Foukakis T, Navin NE. Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing. Cell. PMID 29681456 DOI: 10.1016/J.Cell.2018.03.041 |
0.498 |
|
| 2018 |
Benton CB, Al Rawi A, Wang F, Zhang J, Jorgensen JL, Mu H, Schober W, Alaniz Z, Gumbs C, Futreal A, Garcia-Manero G, Kantarjian HM, Navin N, Konopleva MY, Andreeff M. Distinct Gene Expression Patterns of Minimal Residual Disease (MRD) Cells in High-Risk AML Patients Identified By RNA-Sequencing Blood. 132: 2757-2757. DOI: 10.1182/Blood-2018-99-120260 |
0.369 |
|
| 2018 |
Oikawa M, Ramesh N, Sei E, Bai S, Hu M, John dGF, Rshmi M, O'Brien B, Navin N. Abstract 5599: Noninvasive genomic profiling of cerebral spinal fluid in breast cancer patient with leptomeningeal disease Cancer Research. 78: 5599-5599. DOI: 10.1158/1538-7445.Am2018-5599 |
0.486 |
|
| 2018 |
Ramesh N, Sei E, Gao R, Tsai PC, Logothetis C, Zurita AJ, Navin NE. Abstract 3665: Longitudinal monitoring of prostate cancer evolution by plasma genome sequencing Cancer Research. 78: 3665-3665. DOI: 10.1158/1538-7445.Am2018-3665 |
0.487 |
|
| 2018 |
Du H, Davis A, Gao R, Colic M, Sei E, Hu M, Barrera AG, Casasent A, Albarracin C, Arun B, Navin NE. Abstract 2192: Single-molecule single-cell DNA sequencing identifies ongoing copy number evolution in BRCA breast cancers Cancer Research. 78: 2192-2192. DOI: 10.1158/1538-7445.Am2018-2192 |
0.565 |
|
| 2018 |
Zafar H, Navin N, Nakhleh L, Chen K. Computational approaches for inferring tumor evolution from single-cell genomic data Current Opinion in Systems Biology. 7: 16-25. DOI: 10.1016/J.Coisb.2017.11.008 |
0.533 |
|
| 2017 |
Casasent AK, Schalck A, Gao R, Sei E, Long A, Pangburn W, Casasent T, Meric-Bernstam F, Edgerton ME, Navin NE. Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing. Cell. PMID 29307488 DOI: 10.1016/J.Cell.2017.12.007 |
0.542 |
|
| 2017 |
Zafar H, Tzen A, Navin N, Chen K, Nakhleh L. SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models. Genome Biology. 18: 178. PMID 28927434 DOI: 10.1186/S13059-017-1311-2 |
0.465 |
|
| 2017 |
Gao R, Kim C, Sei E, Foukakis T, Crosetto N, Chan LK, Srinivasan M, Zhang H, Meric-Bernstam F, Navin N. Nanogrid single-nucleus RNA sequencing reveals phenotypic diversity in breast cancer. Nature Communications. 8: 228. PMID 28794488 DOI: 10.1038/S41467-017-00244-W |
0.507 |
|
| 2017 |
Gausachs M, Borras E, Chang K, González S, Azuara D, Delgado Amador A, Lopez-Doriga A, San Lucas FA, Sanjuan X, Paules MJ, Taggart M, Davies G, Ehli EA, Fowler J, Moreno V, ... ... Navin NE, et al. Mutational Heterogeneity in APC and KRAS Arises at the Crypt level and Leads to Polyclonality in Early Colorectal Tumorigenesis. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28645942 DOI: 10.1158/1078-0432.Ccr-17-0821 |
0.341 |
|
| 2017 |
Leung ML, Davis A, Gao R, Casasent A, Wang Y, Sei E, Sanchez E, Maru D, Kopetz S, Navin NE. Single cell DNA sequencing reveals a late-dissemination model in metastatic colorectal cancer. Genome Research. PMID 28546418 DOI: 10.1101/Gr.209973.116 |
0.529 |
|
| 2017 |
Davis A, Gao R, Navin N. Tumor Evolution: Linear, Branching, Neutral or Punctuated? Biochimica Et Biophysica Acta. PMID 28110020 DOI: 10.1016/J.Bbcan.2017.01.003 |
0.486 |
|
| 2017 |
Aparicio A, Xiao L, Tapia ELN, Hoang A, Ramesh N, Wu W, Chancoco H, Heath EI, Efstathiou E, Thompson TC, Troncoso P, Broom BM, Zurita AJ, Navin N, Logothetis C, et al. The aggressive variant prostate carcinoma (AVPC) molecular signature (-MS) and platinum-sensitivity in castration resistant prostate cancer (CRPC). Journal of Clinical Oncology. 35: 5013-5013. DOI: 10.1200/Jco.2017.35.15_Suppl.5013 |
0.365 |
|
| 2017 |
Gao R, Kim C, Sei E, Yang J, Chan L, Srinivasan M, Zhang H, Meric-Bernstam F, Navin NE. Abstract 5399: Investigating phenotypic plasticity in breast cancer with high-throughput nanogrid single-nucleus RNA sequencing Cancer Research. 77: 5399-5399. DOI: 10.1158/1538-7445.Am2017-5399 |
0.53 |
|
| 2017 |
Kim C, Gao R, Sei E, Brandt R, Crosetto N, Foukakis T, Navin N. Abstract 418: Adaptive resistance to chemotherapy in triple-negative breast cancer revealed by single cell DNA and RNA sequencing Cancer Research. 77: 418-418. DOI: 10.1158/1538-7445.Am2017-418 |
0.48 |
|
| 2016 |
Casasent A, Edgerton M, Navin NE. Genome evolution in ductal carcinoma in situ: invasion of the clones. The Journal of Pathology. PMID 27861897 DOI: 10.1002/Path.4840 |
0.429 |
|
| 2016 |
Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ, Svensson V, Sweedler JV, Teichmann SA. Single-cell analysis at the threshold. Nature Biotechnology. 34: 1111-1118. PMID 27824834 DOI: 10.1038/Nbt.3721 |
0.349 |
|
| 2016 |
Gao R, Davis A, McDonald TO, Sei E, Shi X, Wang Y, Tsai PC, Casasent A, Waters J, Zhang H, Meric-Bernstam F, Michor F, Navin NE. Punctuated copy number evolution and clonal stasis in triple-negative breast cancer. Nature Genetics. PMID 27526321 DOI: 10.1038/Ng.3641 |
0.569 |
|
| 2016 |
Mann KM, Newberg JY, Black MA, Jones DJ, Amaya-Manzanares F, Guzman-Rojas L, Kodama T, Ward JM, Rust AG, van der Weyden L, Yew CC, Waters JL, Leung ML, Rogers K, Rogers SM, ... ... Navin N, et al. Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq. Nature Biotechnology. PMID 27479497 DOI: 10.1038/Nbt.3637 |
0.533 |
|
| 2016 |
Navin NE, Chen K. Genotyping tumor clones from single-cell data. Nature Methods. 13: 555-556. PMID 27355792 DOI: 10.1038/Nmeth.3903 |
0.481 |
|
| 2016 |
Davis A, Navin NE. Computing tumor trees from single cells. Genome Biology. 17: 113. PMID 27230879 DOI: 10.1186/S13059-016-0987-Z |
0.461 |
|
| 2016 |
Zafar H, Wang Y, Nakhleh L, Navin N, Chen K. Monovar: single-nucleotide variant detection in single cells. Nature Methods. PMID 27088313 DOI: 10.1038/Nmeth.3835 |
0.441 |
|
| 2016 |
Baslan T, Kendall J, Rodgers L, Cox H, Riggs M, Stepansky A, Troge J, Ravi K, Esposito D, Lakshmi B, Wigler M, Navin N, Hicks J. Corrigendum: Genome-wide copy number analysis of single cells. Nature Protocols. 11: 616. PMID 26914320 DOI: 10.1038/Nprot0316.616B |
0.302 |
|
| 2016 |
Leung ML, Wang Y, Kim C, Gao R, Jiang J, Sei E, Navin NE. Highly multiplexed targeted DNA sequencing from single nuclei. Nature Protocols. 11: 214-235. PMID 26741407 DOI: 10.1038/Nprot.2016.005 |
0.433 |
|
| 2016 |
Clarke C, Korphaisarn K, Jiang Z, Crosby S, Davis DW, Wu W, Raghav KPS, Overman MJ, Morris VK, Kee BK, Eng C, Fogelman DR, Navin N, Kopetz S. Antibody-independent isolation and characterization of circulating tumor cells using dielectrophoresis: Fluid flow fractionation in metastatic colorectal cancer. Journal of Clinical Oncology. 34. DOI: 10.1200/Jco.2016.34.15_Suppl.E23023 |
0.434 |
|
| 2016 |
Casasent AK, Long AN, Schalck A, Sei E, Gao R, Davis A, Wang Y, Edgerton ME, Navin NE. Abstract 2375: Multiclonal invasion in breast cancer identified by single cell DNA sequencing Cancer Research. 76: 2375-2375. DOI: 10.1158/1538-7445.Am2016-2375 |
0.528 |
|
| 2016 |
Davis AJ, Gao R, Sei E, Tsai P, Casasent A, Zhang A, Shi X, Wang Y, Waters J, Meric-Bernstam F, Edgerton M, Navin N. Abstract 2371: Multi-cell phylogenetic inference of copy number evolution in breast cancer Cancer Research. 76: 2371-2371. DOI: 10.1158/1538-7445.Am2016-2371 |
0.577 |
|
| 2016 |
Leung ML, Casasent A, Wang Y, Sei E, Navin N. Abstract 157: Single-cell DNA sequencing identifies a late dissemination model in metastatic colorectal cancer Cancer Research. 76: 157-157. DOI: 10.1158/1538-7445.Am2016-157 |
0.564 |
|
| 2015 |
Navin NE. The first five years of single-cell cancer genomics and beyond. Genome Research. 25: 1499-507. PMID 26430160 DOI: 10.1101/Gr.191098.115 |
0.495 |
|
| 2015 |
Alizadeh AA, Aranda V, Bardelli A, Blanpain C, Bock C, Borowski C, Caldas C, Califano A, Doherty M, Elsner M, Esteller M, Fitzgerald R, Korbel JO, Lichter P, Mason CE, ... Navin N, et al. Toward understanding and exploiting tumor heterogeneity. Nature Medicine. 21: 846-53. PMID 26248267 DOI: 10.1038/Nm.3915 |
0.388 |
|
| 2015 |
Navin NE. Delineating cancer evolution with single-cell sequencing. Science Translational Medicine. 7: 296fs29. PMID 26180099 DOI: 10.1126/scitranslmed.aac8319 |
0.391 |
|
| 2015 |
Wang Y, Navin NE. Advances and applications of single-cell sequencing technologies. Molecular Cell. 58: 598-609. PMID 26000845 DOI: 10.1016/J.Molcel.2015.05.005 |
0.388 |
|
| 2015 |
Leung ML, Wang Y, Waters J, Navin NE. SNES: single nucleus exome sequencing. Genome Biology. 16: 55. PMID 25853327 DOI: 10.1186/S13059-015-0616-2 |
0.42 |
|
| 2015 |
Malhotra A, Wang Y, Waters J, Chen K, Meric-Bernstam F, Hall IM, Navin NE. Ploidy-Seq: inferring mutational chronology by sequencing polyploid tumor subpopulations. Genome Medicine. 7: 6. PMID 25729435 DOI: 10.1186/S13073-015-0127-5 |
0.52 |
|
| 2015 |
Navin NE. Abstract IA22: Investigating breast cancer evolution and diversity with single-cell sequencing Clinical Cancer Research. 21. DOI: 10.1158/1557-3265.Pms14-Ia22 |
0.582 |
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| 2015 |
Gao R, Davis A, Sei E, Shi X, Unruh A, Waters J, Zhang A(, Meric-Bernstam F, Navin N. Abstract LB-170: Single cell sequencing identifies clonal stasis and punctuated copy number evolution in triple-negative breast cancer patients Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-170 |
0.489 |
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| 2015 |
Mann KM, Newberg J, Navin N, Adams DJ, Jenkins N, Copeland N, Mann MB. Abstract 2893: Sleeping Beauty uncovers cooperating driver genes in a preclinical mouse model of myeloid leukemia Cancer Research. 75: 2893-2893. DOI: 10.1158/1538-7445.Am2015-2893 |
0.467 |
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| 2014 |
Navin NE. Cancer genomics: one cell at a time. Genome Biology. 15: 452. PMID 25222669 DOI: 10.1186/S13059-014-0452-9 |
0.472 |
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| 2014 |
Wang Y, Waters J, Leung ML, Unruh A, Roh W, Shi X, Chen K, Scheet P, Vattathil S, Liang H, Multani A, Zhang H, Zhao R, Michor F, Meric-Bernstam F, ... Navin NE, et al. Clonal evolution in breast cancer revealed by single nucleus genome sequencing. Nature. 512: 155-60. PMID 25079324 DOI: 10.1038/Nature13600 |
0.489 |
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| 2014 |
Navin NE. Tumor evolution in response to chemotherapy: phenotype versus genotype. Cell Reports. 6: 417-9. PMID 24529750 DOI: 10.1016/J.Celrep.2014.01.035 |
0.417 |
|
| 2014 |
Wang Y, Navin N, Waters J, Leung M, Unruh A, Shi X, Roh W, Chen K, Scheet P, Vattathil S, Liang H, Multani A, Zhang H, Meric-Bernstam F, Michor F, et al. Abstract LB-310: Single cell genome sequencing reveals clonal stability and diversity in breast cancer Cancer Research. 74. DOI: 10.1158/1538-7445.Am2014-Lb-310 |
0.59 |
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| 2013 |
Chen K, Navin NE, Wang Y, Schmidt HK, Wallis JW, Niu B, Fan X, Zhao H, McLellan MD, Hoadley KA, Mardis ER, Ley TJ, Perou CM, Wilson RK, Ding L. BreakTrans: uncovering the genomic architecture of gene fusions. Genome Biology. 14: R87. PMID 23972288 DOI: 10.1186/Gb-2013-14-8-R87 |
0.456 |
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| 2013 |
Larsson CA, Kojima K, Wang Y, Navin N, Gallardo M, Primo D, Rojas JL, Martinez J, Manshouri T, Lee HJ, Bradner JE, Ballesteros J, Post SM, Lozano G(, Quintás-Cardama A. BET Bromodomain Inhibition Reduces Leukemic Burden and Prolongs Survival In The Eμ-TCL1 Transgenic Mouse Model Of Chronic Lymphocytic Leukemia (CLL) Independent Of TP53 Mutation Status Blood. 122: 876-876. DOI: 10.1182/Blood.V122.21.876.876 |
0.313 |
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| 2012 |
Baslan T, Kendall J, Rodgers L, Cox H, Riggs M, Stepansky A, Troge J, Ravi K, Esposito D, Lakshmi B, Wigler M, Navin N, Hicks J. Genome-wide copy number analysis of single cells. Nature Protocols. 7: 1024-41. PMID 22555242 DOI: 10.1038/Nprot.2012.039 |
0.448 |
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| 2012 |
Navin NE, Wang Y, Waters J, Chen K, Hall I, Malhotra A, Quinlan A. Abstract 5054: Inferring mutational chronology in breast cancer by deep-sequencing tumor subpopulations Cancer Research. 72: 5054-5054. DOI: 10.1158/1538-7445.Am2012-5054 |
0.523 |
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| 2012 |
Navin N. Abstract ES5-3: Investigating Breast Cancer with Single-Cell Sequencing Cancer Research. 72. DOI: 10.1158/0008-5472.Sabcs12-Es5-3 |
0.591 |
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| 2011 |
Russnes HG, Navin N, Hicks J, Borresen-Dale AL. Insight into the heterogeneity of breast cancer through next-generation sequencing Journal of Clinical Investigation. 121: 3810-3818. PMID 21965338 DOI: 10.1172/Jci57088 |
0.547 |
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| 2011 |
Chen M, Pratt CP, Zeeman ME, Schultz N, Taylor BS, O'Neill A, Castillo-Martin M, Nowak DG, Naguib A, Grace DM, Murn J, Navin N, Atwal GS, Sander C, Gerald WL, et al. Identification of PHLPP1 as a tumor suppressor reveals the role of feedback activation in PTEN-mutant prostate cancer progression. Cancer Cell. 20: 173-86. PMID 21840483 DOI: 10.1016/J.Ccr.2011.07.013 |
0.364 |
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| 2011 |
Navin NE, Hicks J. Future medical applications of single-cell sequencing in cancer Genome Medicine. 3: 31-31. PMID 21631906 DOI: 10.1186/Gm247 |
0.57 |
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| 2011 |
Navin N, Kendall J, Troge J, Andrews P, Rodgers L, McIndoo J, Cook K, Stepansky A, Levy D, Esposito D, Muthuswamy L, Krasnitz A, McCombie WR, Hicks J, Wigler M. Tumour evolution inferred by single-cell sequencing. Nature. 472: 90-4. PMID 21399628 DOI: 10.1038/Nature09807 |
0.463 |
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| 2011 |
Navin NE, Hicks J. Corrigendum to "Tracing the tumor lineage" [Mol. Oncol. 4 (2010) 267-283] Molecular Oncology. 5: 302. DOI: 10.1016/J.Molonc.2011.01.008 |
0.38 |
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| 2010 |
Navin NE, Hicks J. Tracing the tumor lineage. Molecular Oncology. 4: 267-83. PMID 20537601 DOI: 10.1016/J.Molonc.2010.04.010 |
0.496 |
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| 2010 |
Navin N, Krasnitz A, Rodgers L, Cook K, Meth J, Kendall J, Riggs M, Eberling Y, Troge J, Grubor V, Levy D, Lundin P, Månér S, Zetterberg A, Hicks J, et al. Inferring tumor progression from genomic heterogeneity. Genome Research. 20: 68-80. PMID 19903760 DOI: 10.1101/Gr.099622.109 |
0.515 |
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| 2010 |
Hicks JB, Navin NE, Kendall JT, Levy D, Wigler MH. Tracing Tumor Lineage and Progression through Genomic Copy Number Profiling at the Single Cell Level Annals of Oncology. DOI: 10.1093/Annonc/Mdq145 |
0.495 |
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| 2009 |
Grubor V, Krasnitz A, Troge JE, Meth JL, Lakshmi B, Kendall JT, Yamrom B, Alex G, Pai D, Navin N, Hufnagel LA, Lee YH, Cook K, Allen SL, Rai KR, et al. Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA). Blood. 113: 1294-303. PMID 18922857 DOI: 10.1182/Blood-2008-05-158865 |
0.395 |
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| 2008 |
Grubor V, Krasnitz A, Troge JE, Meth JL, Lakshmi B, Kendall JT, Yamrom B, Alex G, Pai D, Navin N, Hufnagel LA, Lee Y, Cook K, Allen SL, Rai KR, et al. High-Resolution Array-Based Comparative Genome Hybridization (CGH) Identifies Novel and Recurrent Regions in CLL. Blood. 112: 2058-2058. DOI: 10.1182/Blood.V112.11.2058.2058 |
0.356 |
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| 2006 |
Pelham RJ, Rodgers L, Hall I, Lucito R, Nguyen KC, Navin N, Hicks J, Mu D, Powers S, Wigler M, Botstein D. Identification of alterations in DNA copy number in host stromal cells during tumor progression. Proceedings of the National Academy of Sciences of the United States of America. 103: 19848-53. PMID 17167050 DOI: 10.1073/Pnas.0609635104 |
0.46 |
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| 2006 |
Hicks J, Krasnitz A, Lakshmi B, Navin NE, Riggs M, Leibu E, Esposito D, Alexander J, Troge J, Grubor V, Yoon S, Wigler M, Ye K, Børresen-Dale AL, Naume B, et al. Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Research. 16: 1465-79. PMID 17142309 DOI: 10.1101/Gr.5460106 |
0.484 |
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| 2006 |
Navin N, Grubor V, Hicks J, Leibu E, Thomas E, Troge J, Riggs M, Lundin P, Månér S, Sebat J, Zetterberg A, Wigler M. PROBER: oligonucleotide FISH probe design software. Bioinformatics (Oxford, England). 22: 2437-8. PMID 16740623 DOI: 10.1093/Bioinformatics/Btl273 |
0.4 |
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| 2005 |
Hicks J, Muthuswamy L, Krasnitz A, Navin N, Riggs M, Grubor V, Esposito D, Alexander J, Troge J, Wigler M, Maner S, Lundin P, Zetterberg A. High-resolution ROMA CGH and FISH analysis of aneuploid and diploid breast tumors. Cold Spring Harbor Symposia On Quantitative Biology. 70: 51-63. PMID 16869738 DOI: 10.1101/Sqb.2005.70.055 |
0.479 |
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| 2005 |
Hicks J, Grubor V, Navin N, Lundin P, Månér S, Hägerström T, Skoog L, Wigler M, Zetterberg A. High-resolution representational oligonucleotide microarray analysis and fluorescence in situ hybridization analysis of aneuploid and diploid breast tumors. Breast Cancer Research. 7: 1-1. DOI: 10.1186/Bcr1069 |
0.392 |
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| 2004 |
Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Månér S, Massa H, Walker M, Chi M, Navin N, Lucito R, Healy J, Hicks J, Ye K, et al. Large-scale copy number polymorphism in the human genome. Science (New York, N.Y.). 305: 525-8. PMID 15273396 DOI: 10.1126/Science.1098918 |
0.35 |
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| 2004 |
Thomas EE, Srebro N, Sebat J, Navin N, Healy J, Mishra B, Wigler M. Distribution of short paired duplications in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 10349-54. PMID 15240876 DOI: 10.1073/Pnas.0403727101 |
0.367 |
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